Wall clock time and date at job start Tue Mar 31 2020 02:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47170 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46834 * 120.00079 * 3 2 1 6 6 H 1.48502 * 109.47352 * 240.00183 * 3 2 1 7 7 C 1.40049 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 179.97438 * 7 2 1 9 9 C 1.46364 * 119.99951 * 359.97438 * 7 2 1 10 10 O 1.21694 * 120.00475 * 354.96972 * 9 7 2 11 11 N 1.34782 * 120.00222 * 174.96909 * 9 7 2 12 12 C 1.46968 * 120.58768 * 5.07752 * 11 9 7 13 13 C 1.53815 * 108.39726 * 124.75663 * 12 11 9 14 14 N 1.46961 * 108.57961 * 49.63486 * 13 12 11 15 15 C 1.34779 * 120.59559 * 124.62774 * 14 13 12 16 16 O 1.21275 * 120.00402 * 184.85570 * 15 14 13 17 17 C 1.50703 * 119.99792 * 4.84962 * 15 14 13 18 18 C 1.54267 * 110.03025 * 201.83563 * 17 15 14 19 19 C 1.54891 * 104.19414 * 217.10309 * 18 17 15 20 20 C 1.54885 * 102.74844 * 37.94287 * 19 18 17 21 21 C 1.53873 * 110.03531 * 84.66876 * 17 15 14 22 22 C 1.46963 * 118.81232 * 304.64665 * 14 13 12 23 23 C 1.46960 * 120.59759 * 185.34973 * 11 9 7 24 24 H 0.97003 * 120.00324 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.60571 * 244.53442 * 12 11 9 26 26 H 1.08996 * 109.61231 * 5.04729 * 12 11 9 27 27 H 1.09001 * 109.74052 * 289.84091 * 13 12 11 28 28 H 1.09001 * 109.52803 * 169.30093 * 13 12 11 29 29 H 1.09003 * 110.01644 * 323.27775 * 17 15 14 30 30 H 1.08991 * 110.48947 * 335.78479 * 18 17 15 31 31 H 1.09008 * 110.48691 * 98.42778 * 18 17 15 32 32 H 1.08996 * 110.75478 * 279.62713 * 19 18 17 33 33 H 1.08993 * 110.91506 * 156.33099 * 19 18 17 34 34 H 1.08994 * 110.49108 * 203.37806 * 20 19 18 35 35 H 1.09008 * 110.59822 * 80.78997 * 20 19 18 36 36 H 1.09000 * 110.03141 * 238.57081 * 21 17 15 37 37 H 1.09007 * 110.02875 * 359.97438 * 21 17 15 38 38 H 1.09006 * 109.61045 * 295.48208 * 22 14 13 39 39 H 1.08998 * 109.61017 * 174.97290 * 22 14 13 40 40 H 1.08993 * 109.61031 * 354.95481 * 23 11 9 41 41 H 1.09003 * 109.60639 * 115.29289 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6964 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4804 -0.0005 10 8 0.0617 -2.4825 0.0923 11 7 1.9450 -3.6454 -0.1034 12 6 3.4145 -3.6655 -0.1045 13 6 3.8880 -4.6067 1.0162 14 7 3.1621 -5.8790 0.8970 15 6 3.8321 -7.0439 0.7933 16 8 3.2258 -8.0776 0.6072 17 6 5.3346 -7.0618 0.9086 18 6 5.9009 -8.3301 0.2374 19 6 7.0853 -8.7439 1.1457 20 6 6.5527 -8.4304 2.5659 21 6 5.7490 -7.1256 2.3891 22 6 1.6926 -5.8583 0.8925 23 6 1.2191 -4.9177 -0.2225 24 1 -0.4851 0.8400 -0.0004 25 1 3.7746 -4.0285 -1.0672 26 1 3.7943 -2.6598 0.0754 27 1 3.6806 -4.1567 1.9870 28 1 4.9584 -4.7852 0.9141 29 1 5.7553 -6.1715 0.4412 30 1 5.1472 -9.1169 0.2113 31 1 6.2529 -8.1042 -0.7692 32 1 7.9693 -8.1460 0.9240 33 1 7.3034 -9.8066 1.0408 34 1 7.3802 -8.2778 3.2587 35 1 5.9045 -9.2329 2.9182 36 1 6.3715 -6.2667 2.6399 37 1 4.8633 -7.1431 3.0243 38 1 1.3289 -5.4974 1.8546 39 1 1.3132 -6.8635 0.7088 40 1 0.1488 -4.7391 -0.1205 41 1 1.4242 -5.3662 -1.1946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219503220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:44 Heat of formation + Delta-G solvation = -72.670037 kcal Electronic energy + Delta-G solvation = -22607.966665 eV Core-core repulsion = 19294.459724 eV Total energy + Delta-G solvation = -3313.506940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.36264 -38.28846 -37.02033 -35.80216 -33.08936 -32.50450 -31.27756 -29.25907 -28.84665 -27.31102 -25.94687 -23.36034 -22.57723 -21.01454 -20.83562 -19.45105 -18.36915 -17.45547 -16.19854 -16.07505 -15.90994 -15.46775 -14.75893 -14.69128 -14.49097 -14.15512 -14.04027 -13.53503 -13.43503 -12.93961 -12.62848 -12.16784 -11.73791 -11.68025 -11.45453 -11.37687 -11.31232 -11.23210 -11.21112 -11.03106 -10.97417 -10.85544 -10.72325 -10.62317 -10.30054 -10.11843 -9.50029 -8.94463 -8.62451 -7.68194 -7.27153 -6.27508 -4.73844 2.75006 3.09836 3.12201 3.15959 3.17081 4.01526 4.33047 4.41790 4.43375 4.49010 4.55677 4.89889 5.11636 5.27363 5.30231 5.30880 5.39514 5.45709 5.50030 5.54228 5.57628 5.63565 5.68335 5.72968 5.84851 5.93640 5.96846 6.01845 6.07938 6.09489 6.24581 6.26770 6.35729 6.51302 6.75046 7.36567 7.47324 7.59896 8.01788 8.23619 8.32603 8.93570 9.32308 10.48631 10.67012 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028800 B = 0.004103 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.002394 B = 6822.308807 C = 7483.411613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.575 6.575 11 N -0.643 5.643 12 C 0.109 3.891 13 C 0.088 3.912 14 N -0.604 5.604 15 C 0.519 3.481 16 O -0.550 6.550 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.110 4.110 22 C 0.099 3.901 23 C 0.108 3.892 24 H 0.270 0.730 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.543 -10.989 3.072 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.458 6.458 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.036 4.036 14 N -0.337 5.337 15 C 0.307 3.693 16 O -0.428 6.428 17 C -0.137 4.137 18 C -0.152 4.152 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.148 4.148 22 C -0.025 4.025 23 C -0.017 4.017 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.319 -11.390 3.027 17.784 hybrid contribution 0.524 0.968 -0.017 1.101 sum 13.843 -10.421 3.010 17.586 Atomic orbital electron populations 1.69994 1.07110 1.27570 1.34816 1.25728 0.94623 1.00336 0.92542 0.86439 0.79864 0.81045 0.79471 1.20517 1.19199 1.19220 1.20908 0.93471 0.89195 1.54621 0.90928 1.18287 0.86955 0.82122 0.76131 1.90601 1.14360 1.85924 1.54891 1.48182 1.04392 1.05915 1.79667 1.21897 0.83402 1.00428 0.95959 1.22448 0.96116 0.84120 1.00911 1.48101 1.07303 1.06403 1.71870 1.20564 0.89920 0.83037 0.75785 1.90629 1.69991 1.32330 1.49896 1.22007 0.92278 1.01087 0.98308 1.22372 0.97862 0.96761 0.98172 1.22479 0.97687 1.01084 0.94807 1.22346 0.99219 0.97274 0.97208 1.22043 1.00181 0.98694 0.93842 1.22074 0.79019 1.01240 1.00134 1.21494 0.99201 0.85106 0.95905 0.91914 0.93465 0.87626 0.90805 0.89578 0.88657 0.89513 0.91483 0.91486 0.91436 0.91525 0.91480 0.90843 0.91542 0.91381 0.89060 0.88640 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.39 11.84 55.55 0.66 -21.73 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 3 Si 0.91 19.26 29.56 -169.99 -5.02 14.24 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.55 -14.59 8.86 -35.64 -0.32 -14.91 16 8 H 0.07 1.72 5.67 -52.48 -0.30 1.43 16 9 C 0.56 15.37 7.62 -12.99 -0.10 15.27 16 10 O -0.58 -18.18 14.45 5.19 0.08 -18.11 16 11 N -0.64 -14.10 2.94 -173.88 -0.51 -14.61 16 12 C 0.11 1.86 6.51 -3.36 -0.02 1.84 16 13 C 0.09 1.23 6.49 -3.37 -0.02 1.20 16 14 N -0.60 -9.34 2.95 -172.22 -0.51 -9.85 16 15 C 0.52 7.81 6.61 -10.98 -0.07 7.73 16 16 O -0.55 -10.00 14.94 5.56 0.08 -9.91 16 17 C -0.12 -1.29 2.47 -90.65 -0.22 -1.51 16 18 C -0.11 -1.20 6.29 -25.07 -0.16 -1.36 16 19 C -0.12 -1.02 6.91 -24.74 -0.17 -1.20 16 20 C -0.12 -1.06 6.83 -25.08 -0.17 -1.23 16 21 C -0.11 -1.06 6.45 -25.62 -0.17 -1.23 16 22 C 0.10 1.69 6.60 -3.60 -0.02 1.66 16 23 C 0.11 2.13 6.60 -3.60 -0.02 2.10 16 24 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.11 1.83 5.34 -51.93 -0.28 1.56 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 0.91 5.41 -51.93 -0.28 0.63 16 29 H 0.10 0.93 6.19 -51.93 -0.32 0.61 16 30 H 0.09 1.10 6.78 -51.93 -0.35 0.75 16 31 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.74 7.67 -51.93 -0.40 0.34 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.54 6.99 -51.93 -0.36 1.17 16 40 H 0.10 2.07 6.99 -51.93 -0.36 1.71 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -34.15 322.48 -7.95 -42.09 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.01 Total: 2.37 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -1.56 Total: 10.64 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.36 Total: -46.19 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: 0.16 Total: -28.02 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.15 -7.95 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219503220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.578 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds