Wall clock time and date at job start Tue Mar 31 2020 02:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47170 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46834 * 120.00079 * 3 2 1 6 6 H 1.48502 * 109.47352 * 240.00183 * 3 2 1 7 7 C 1.40049 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 179.97438 * 7 2 1 9 9 C 1.46364 * 119.99951 * 359.97438 * 7 2 1 10 10 O 1.21694 * 120.00475 * 354.96972 * 9 7 2 11 11 N 1.34782 * 120.00222 * 174.96909 * 9 7 2 12 12 C 1.46968 * 120.58768 * 5.07752 * 11 9 7 13 13 C 1.53815 * 108.39726 * 124.75663 * 12 11 9 14 14 N 1.46961 * 108.57961 * 49.63486 * 13 12 11 15 15 C 1.34779 * 120.59559 * 124.62774 * 14 13 12 16 16 O 1.21275 * 120.00402 * 184.85570 * 15 14 13 17 17 C 1.50703 * 119.99792 * 4.84962 * 15 14 13 18 18 C 1.54267 * 110.03025 * 201.83563 * 17 15 14 19 19 C 1.54891 * 104.19414 * 217.10309 * 18 17 15 20 20 C 1.54885 * 102.74844 * 37.94287 * 19 18 17 21 21 C 1.53873 * 110.03531 * 84.66876 * 17 15 14 22 22 C 1.46963 * 118.81232 * 304.64665 * 14 13 12 23 23 C 1.46960 * 120.59759 * 185.34973 * 11 9 7 24 24 H 0.97003 * 120.00324 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.60571 * 244.53442 * 12 11 9 26 26 H 1.08996 * 109.61231 * 5.04729 * 12 11 9 27 27 H 1.09001 * 109.74052 * 289.84091 * 13 12 11 28 28 H 1.09001 * 109.52803 * 169.30093 * 13 12 11 29 29 H 1.09003 * 110.01644 * 323.27775 * 17 15 14 30 30 H 1.08991 * 110.48947 * 335.78479 * 18 17 15 31 31 H 1.09008 * 110.48691 * 98.42778 * 18 17 15 32 32 H 1.08996 * 110.75478 * 279.62713 * 19 18 17 33 33 H 1.08993 * 110.91506 * 156.33099 * 19 18 17 34 34 H 1.08994 * 110.49108 * 203.37806 * 20 19 18 35 35 H 1.09008 * 110.59822 * 80.78997 * 20 19 18 36 36 H 1.09000 * 110.03141 * 238.57081 * 21 17 15 37 37 H 1.09007 * 110.02875 * 359.97438 * 21 17 15 38 38 H 1.09006 * 109.61045 * 295.48208 * 22 14 13 39 39 H 1.08998 * 109.61017 * 174.97290 * 22 14 13 40 40 H 1.08993 * 109.61031 * 354.95481 * 23 11 9 41 41 H 1.09003 * 109.60639 * 115.29289 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6964 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4804 -0.0005 10 8 0.0617 -2.4825 0.0923 11 7 1.9450 -3.6454 -0.1034 12 6 3.4145 -3.6655 -0.1045 13 6 3.8880 -4.6067 1.0162 14 7 3.1621 -5.8790 0.8970 15 6 3.8321 -7.0439 0.7933 16 8 3.2258 -8.0776 0.6072 17 6 5.3346 -7.0618 0.9086 18 6 5.9009 -8.3301 0.2374 19 6 7.0853 -8.7439 1.1457 20 6 6.5527 -8.4304 2.5659 21 6 5.7490 -7.1256 2.3891 22 6 1.6926 -5.8583 0.8925 23 6 1.2191 -4.9177 -0.2225 24 1 -0.4851 0.8400 -0.0004 25 1 3.7746 -4.0285 -1.0672 26 1 3.7943 -2.6598 0.0754 27 1 3.6806 -4.1567 1.9870 28 1 4.9584 -4.7852 0.9141 29 1 5.7553 -6.1715 0.4412 30 1 5.1472 -9.1169 0.2113 31 1 6.2529 -8.1042 -0.7692 32 1 7.9693 -8.1460 0.9240 33 1 7.3034 -9.8066 1.0408 34 1 7.3802 -8.2778 3.2587 35 1 5.9045 -9.2329 2.9182 36 1 6.3715 -6.2667 2.6399 37 1 4.8633 -7.1431 3.0243 38 1 1.3289 -5.4974 1.8546 39 1 1.3132 -6.8635 0.7088 40 1 0.1488 -4.7391 -0.1205 41 1 1.4242 -5.3662 -1.1946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219503220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:43 Heat of formation + Delta-G solvation = -95.464420 kcal Electronic energy + Delta-G solvation = -22608.955103 eV Core-core repulsion = 19294.459724 eV Total energy + Delta-G solvation = -3314.495379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56632 -39.87879 -38.14272 -37.39467 -34.83974 -34.45255 -32.68777 -30.22521 -29.58910 -29.03372 -27.64594 -24.80599 -23.94678 -22.37159 -21.52435 -20.93669 -19.69871 -18.77293 -17.97222 -17.50335 -17.17050 -16.71239 -16.24631 -16.01844 -15.82461 -15.72429 -15.50446 -14.63713 -14.47141 -14.23723 -14.20324 -13.59701 -13.52880 -13.14264 -12.89247 -12.71180 -12.68265 -12.38045 -12.30663 -12.19246 -12.01780 -11.99149 -11.98106 -11.88940 -11.56052 -11.41558 -10.90588 -10.69520 -10.07574 -9.80023 -9.01578 -8.28373 -6.83827 1.43300 1.46236 1.57344 1.58032 1.88640 2.25893 2.46689 2.80342 3.40303 3.58813 3.66090 3.73291 3.89567 3.94116 4.14183 4.19647 4.29183 4.43978 4.48677 4.54924 4.55217 4.60883 4.68757 4.70990 4.77227 4.82860 4.85133 4.96492 5.06224 5.09147 5.25736 5.27128 5.33482 5.38510 5.44865 5.53674 5.71276 6.11476 6.29907 6.42619 6.88531 7.11756 7.39535 8.45371 8.67414 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028800 B = 0.004103 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.002394 B = 6822.308807 C = 7483.411613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.281 1.281 5 H -0.250 1.250 6 H -0.252 1.252 7 C -0.565 4.565 8 H 0.102 0.898 9 C 0.540 3.460 10 O -0.633 6.633 11 N -0.645 5.645 12 C 0.102 3.898 13 C 0.096 3.904 14 N -0.607 5.607 15 C 0.516 3.484 16 O -0.587 6.587 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.109 4.109 22 C 0.111 3.889 23 C 0.111 3.889 24 H 0.273 0.727 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.832 -10.312 3.386 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.206 1.206 5 H -0.173 1.173 6 H -0.176 1.176 7 C -0.601 4.601 8 H 0.120 0.880 9 C 0.347 3.653 10 O -0.520 6.520 11 N -0.382 5.382 12 C -0.021 4.021 13 C -0.026 4.026 14 N -0.339 5.339 15 C 0.306 3.694 16 O -0.467 6.467 17 C -0.132 4.132 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.147 4.147 22 C -0.013 4.013 23 C -0.014 4.014 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.683 -10.762 3.343 20.968 hybrid contribution -0.833 0.635 -0.145 1.058 sum 16.850 -10.126 3.197 19.917 Atomic orbital electron populations 1.70195 1.09750 1.28995 1.36524 1.27032 0.95434 1.05104 0.91143 0.85081 0.78188 0.74594 0.80547 1.20605 1.17345 1.17563 1.21478 0.95037 0.89298 1.54319 0.88000 1.18763 0.86598 0.84101 0.75871 1.90553 1.16825 1.87247 1.57399 1.48049 1.06662 1.05070 1.78450 1.22175 0.80151 1.01645 0.98174 1.22500 0.98272 0.82490 0.99373 1.48183 1.06339 1.07444 1.71925 1.21365 0.91631 0.82035 0.74347 1.90619 1.71167 1.33593 1.51339 1.22130 0.88756 1.02475 0.99808 1.22385 0.98054 0.95647 0.99402 1.22474 0.97285 1.01849 0.93708 1.22367 0.99501 0.96284 0.97953 1.22103 1.00001 1.00388 0.92194 1.21757 0.80856 1.00235 0.98497 1.21470 0.97566 0.84964 0.97361 0.91688 0.91857 0.87529 0.90968 0.84945 0.86138 0.92437 0.90428 0.89415 0.90946 0.89459 0.92977 0.88162 0.93399 0.92118 0.88993 0.91674 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.74 11.84 21.84 0.26 -49.48 16 2 C 0.03 1.50 5.50 85.30 0.47 1.97 16 3 Si 1.00 38.82 29.56 68.60 2.03 40.85 16 4 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 6 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 7 C -0.57 -30.20 8.86 24.83 0.22 -29.98 16 8 H 0.10 4.64 5.67 -2.91 -0.02 4.63 16 9 C 0.54 30.57 7.62 86.36 0.66 31.23 16 10 O -0.63 -42.19 14.45 -4.33 -0.06 -42.25 16 11 N -0.65 -28.58 2.94 -822.25 -2.42 -31.00 16 12 C 0.10 3.29 6.51 86.56 0.56 3.85 16 13 C 0.10 2.41 6.49 86.57 0.56 2.97 16 14 N -0.61 -17.90 2.95 -817.16 -2.41 -20.31 16 15 C 0.52 14.75 6.61 87.66 0.58 15.33 16 16 O -0.59 -21.28 14.94 -3.01 -0.05 -21.33 16 17 C -0.11 -2.12 2.47 -10.81 -0.03 -2.14 16 18 C -0.12 -2.18 6.29 31.67 0.20 -1.98 16 19 C -0.12 -1.53 6.91 31.88 0.22 -1.31 16 20 C -0.12 -1.76 6.83 31.67 0.22 -1.54 16 21 C -0.11 -1.75 6.45 31.32 0.20 -1.54 16 22 C 0.11 3.85 6.60 86.41 0.57 4.42 16 23 C 0.11 4.54 6.60 86.41 0.57 5.11 16 24 H 0.27 15.02 8.29 -92.71 -0.77 14.25 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.11 3.42 5.34 -2.39 -0.01 3.40 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.13 2.10 5.41 -2.39 -0.01 2.09 16 29 H 0.12 1.70 6.19 -2.39 -0.01 1.69 16 30 H 0.06 1.43 6.78 -2.39 -0.02 1.41 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 0.96 7.67 -2.38 -0.02 0.94 16 38 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.09 3.19 6.99 -2.39 -0.02 3.17 16 40 H 0.06 3.05 6.99 -2.39 -0.02 3.03 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -78.99 322.48 3.39 -75.60 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.03 Total: 21.55 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: 5.00 Total: 26.37 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.57 Total: -100.79 kcal Atomic # 8 Polarization: -63.47 SS G_CDS: -0.11 Total: -63.58 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -78.99 3.39 -75.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219503220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.863 kcal (2) G-P(sol) polarization free energy of solvation -78.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds