Wall clock time and date at job start Tue Mar 31 2020 01:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.38533 * 110.99860 * 176.80834 * 14 13 12 16 16 N 1.32458 * 119.18404 * 123.52673 * 15 14 13 17 17 C 1.32301 * 120.76450 * 179.75525 * 16 15 14 18 18 C 1.38783 * 119.16622 * 0.51600 * 17 16 15 19 19 F 1.35099 * 120.74499 * 179.71908 * 18 17 16 20 20 C 1.38777 * 118.51264 * 359.74776 * 18 17 16 21 21 N 1.32305 * 119.16873 * 359.97438 * 20 18 17 22 22 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 23 23 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 30 30 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 31 31 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 32 32 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 33 33 H 1.08001 * 120.41764 * 180.27758 * 17 16 15 34 34 H 1.08000 * 120.41852 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.48998 * 299.35229 * 22 14 13 36 36 H 1.09000 * 109.50650 * 179.29566 * 22 14 13 37 37 H 1.09001 * 109.48531 * 303.15255 * 23 11 10 38 38 H 1.08997 * 109.48515 * 63.19455 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4905 -2.6366 0.0175 12 6 6.0229 -2.0854 -1.2364 13 6 7.5503 -2.0290 -1.1580 14 7 8.0758 -3.3797 -0.9147 15 6 9.4612 -3.3797 -0.9085 16 7 10.1023 -3.8393 0.1556 17 6 11.4246 -3.8582 0.1931 18 6 12.1391 -3.3789 -0.8959 19 9 13.4900 -3.3781 -0.8894 20 6 11.4346 -2.9000 -1.9915 21 7 10.1120 -2.9154 -1.9646 22 6 7.5435 -3.9309 0.3391 23 6 6.0161 -3.9873 0.2607 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.7248 -2.7223 -2.0692 30 1 5.6292 -1.0803 -1.3878 31 1 7.8485 -1.3705 -0.3422 32 1 7.9493 -1.6473 -2.0978 33 1 11.9416 -4.2383 1.0618 34 1 11.9595 -2.5203 -2.8556 35 1 7.8416 -3.2940 1.1719 36 1 7.9371 -4.9360 0.4910 37 1 5.6174 -4.3688 1.2007 38 1 5.7175 -4.6459 -0.5549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273579302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:04 Heat of formation + Delta-G solvation = 34.090032 kcal Electronic energy + Delta-G solvation = -21376.675691 eV Core-core repulsion = 17976.630661 eV Total energy + Delta-G solvation = -3400.045030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.34567 -41.58439 -39.09252 -35.92976 -34.32393 -33.04206 -31.34158 -31.01489 -29.81957 -26.82519 -25.57131 -24.02162 -23.40564 -22.87779 -20.34318 -19.79210 -18.53031 -18.27632 -17.80261 -16.84620 -16.46760 -15.53569 -15.28717 -14.98933 -14.92264 -14.53856 -14.41849 -14.17885 -13.79805 -13.60540 -13.55530 -12.86912 -12.57890 -12.17964 -12.03646 -11.54559 -11.45118 -11.23936 -11.19268 -11.05755 -10.83851 -10.29027 -9.93675 -9.90000 -9.72627 -9.54178 -9.22115 -8.59641 -8.53660 -7.94563 -6.05254 -4.03562 0.36014 0.53939 2.78430 3.23252 3.30965 3.38845 3.43931 3.47935 3.65371 4.17988 4.23193 4.32429 4.43356 4.45253 4.88723 5.04213 5.05629 5.26170 5.29202 5.32484 5.41280 5.54829 5.76786 5.79673 5.94940 6.00351 6.04247 6.13706 6.25737 6.31150 6.43959 6.72599 6.83772 7.10015 7.23735 7.51095 7.57526 7.66146 7.82259 8.51801 8.98914 9.57099 11.08128 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.036655 B = 0.003244 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.700091 B = 8628.346021 C = 9056.114129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.007 4.007 10 C 0.072 3.928 11 N -0.545 5.545 12 C 0.054 3.946 13 C 0.070 3.930 14 N -0.458 5.458 15 C 0.492 3.508 16 N -0.526 5.526 17 C 0.155 3.845 18 C -0.049 4.049 19 F -0.125 7.125 20 C 0.156 3.844 21 N -0.506 5.506 22 C 0.073 3.927 23 C 0.052 3.948 24 H 0.263 0.737 25 H 0.011 0.989 26 H 0.025 0.975 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.925 -7.356 -1.561 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.045 4.045 10 C -0.055 4.055 11 N -0.270 5.270 12 C -0.075 4.075 13 C -0.055 4.055 14 N -0.177 5.177 15 C 0.137 3.863 16 N -0.245 5.245 17 C -0.014 4.014 18 C -0.075 4.075 19 F -0.104 7.104 20 C -0.014 4.014 21 N -0.223 5.223 22 C -0.054 4.054 23 C -0.076 4.076 24 H 0.073 0.927 25 H 0.029 0.971 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.196 0.804 34 H 0.198 0.802 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 23.655 -7.222 -1.556 24.782 hybrid contribution 1.514 0.661 -0.195 1.663 sum 25.168 -6.562 -1.751 26.069 Atomic orbital electron populations 1.69912 1.06330 1.26928 1.51081 1.25001 0.94709 0.99177 0.94486 0.86774 0.80518 0.83525 0.78494 1.20334 1.21427 1.18769 1.21077 0.89394 0.94512 1.51036 0.91101 1.19574 0.96500 0.91682 0.96726 1.22129 0.82792 1.00471 1.00092 1.62321 1.10400 1.20561 1.33712 1.22229 0.91716 1.02048 0.91486 1.22397 0.95994 0.84643 1.02514 1.58676 0.99753 1.23723 1.35534 1.21255 0.91564 0.88901 0.84591 1.68496 1.09041 1.20913 1.26077 1.23277 0.89285 0.91885 0.96932 1.19320 0.79150 1.09222 0.99846 1.91532 1.27219 1.94833 1.96794 1.23308 0.89164 0.92057 0.96833 1.68109 1.08328 1.19269 1.26612 1.22204 0.94561 1.00843 0.87799 1.22222 0.92801 0.90911 1.01697 0.92715 0.97101 0.95717 0.91231 0.95259 0.93730 0.88610 0.92663 0.88580 0.80359 0.80179 0.91757 0.89321 0.89499 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 10 C 0.07 1.41 4.90 -3.83 -0.02 1.39 16 11 N -0.54 -9.06 4.71 -234.47 -1.10 -10.16 16 12 C 0.05 0.82 5.41 -3.77 -0.02 0.80 16 13 C 0.07 0.94 5.46 -3.76 -0.02 0.92 16 14 N -0.46 -6.10 4.77 -175.22 -0.84 -6.94 16 15 C 0.49 6.21 7.17 -322.71 -2.32 3.89 16 16 N -0.53 -6.00 8.70 -13.86 -0.12 -6.12 16 17 C 0.16 1.34 11.29 -17.15 -0.19 1.15 16 18 C -0.05 -0.42 7.38 -39.18 -0.29 -0.71 16 19 F -0.12 -1.02 17.30 2.25 0.04 -0.98 16 20 C 0.16 1.37 11.29 -17.15 -0.19 1.17 16 21 N -0.51 -5.95 9.72 -13.86 -0.13 -6.08 16 22 C 0.07 0.92 4.77 -3.77 -0.02 0.90 16 23 C 0.05 0.72 5.61 -3.77 -0.02 0.70 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.01 0.25 5.93 -51.93 -0.31 -0.06 16 26 H 0.02 0.60 7.19 -51.93 -0.37 0.23 16 27 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 28 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.55 6.34 -51.93 -0.33 1.22 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.21 7.64 -51.93 -0.40 0.81 16 33 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.06 0.85 8.03 -51.93 -0.42 0.44 16 36 H 0.09 1.03 7.81 -51.93 -0.41 0.63 16 37 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -31.65 313.75 -10.14 -41.80 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.19 Total: -2.94 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -3.63 Total: -3.25 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -1.42 Total: -56.33 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.65 -10.14 -41.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273579302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.885 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds