Wall clock time and date at job start Tue Mar 31 2020 01:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.38533 * 110.99860 * 176.80834 * 14 13 12 16 16 N 1.32458 * 119.18404 * 123.52673 * 15 14 13 17 17 C 1.32301 * 120.76450 * 179.75525 * 16 15 14 18 18 C 1.38783 * 119.16622 * 0.51600 * 17 16 15 19 19 F 1.35099 * 120.74499 * 179.71908 * 18 17 16 20 20 C 1.38777 * 118.51264 * 359.74776 * 18 17 16 21 21 N 1.32305 * 119.16873 * 359.97438 * 20 18 17 22 22 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 23 23 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 30 30 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 31 31 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 32 32 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 33 33 H 1.08001 * 120.41764 * 180.27758 * 17 16 15 34 34 H 1.08000 * 120.41852 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.48998 * 299.35229 * 22 14 13 36 36 H 1.09000 * 109.50650 * 179.29566 * 22 14 13 37 37 H 1.09001 * 109.48531 * 303.15255 * 23 11 10 38 38 H 1.08997 * 109.48515 * 63.19455 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4905 -2.6366 0.0175 12 6 6.0229 -2.0854 -1.2364 13 6 7.5503 -2.0290 -1.1580 14 7 8.0758 -3.3797 -0.9147 15 6 9.4612 -3.3797 -0.9085 16 7 10.1023 -3.8393 0.1556 17 6 11.4246 -3.8582 0.1931 18 6 12.1391 -3.3789 -0.8959 19 9 13.4900 -3.3781 -0.8894 20 6 11.4346 -2.9000 -1.9915 21 7 10.1120 -2.9154 -1.9646 22 6 7.5435 -3.9309 0.3391 23 6 6.0161 -3.9873 0.2607 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.7248 -2.7223 -2.0692 30 1 5.6292 -1.0803 -1.3878 31 1 7.8485 -1.3705 -0.3422 32 1 7.9493 -1.6473 -2.0978 33 1 11.9416 -4.2383 1.0618 34 1 11.9595 -2.5203 -2.8556 35 1 7.8416 -3.2940 1.1719 36 1 7.9371 -4.9360 0.4910 37 1 5.6174 -4.3688 1.2007 38 1 5.7175 -4.6459 -0.5549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273579302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:03 Heat of formation + Delta-G solvation = 13.223255 kcal Electronic energy + Delta-G solvation = -21377.580543 eV Core-core repulsion = 17976.630661 eV Total energy + Delta-G solvation = -3400.949882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.00705 -42.39309 -40.18338 -37.18106 -35.08736 -35.02632 -32.75755 -32.08699 -31.15390 -28.19006 -26.36170 -25.52807 -24.48738 -23.92246 -21.97460 -21.02532 -19.32677 -19.22796 -18.85874 -18.49514 -17.20434 -16.56540 -16.43014 -16.17880 -16.08118 -15.81972 -15.55345 -15.32373 -15.07884 -14.83223 -14.60633 -14.25483 -14.14693 -13.38188 -13.24139 -12.93453 -12.85590 -12.51491 -12.35114 -12.21840 -12.13832 -11.78898 -11.69986 -11.46806 -11.35585 -11.09011 -10.73981 -10.31501 -9.47236 -9.28206 -8.28615 -6.32681 -0.39620 -0.14372 1.37278 1.39798 1.52418 1.93024 2.37729 2.46265 2.79282 2.91116 2.96586 3.07222 3.44631 3.66228 3.71383 3.84969 3.95441 4.09755 4.17361 4.32348 4.47443 4.51336 4.56970 4.60817 4.75608 4.84240 4.86710 4.94146 4.99905 5.15896 5.28762 5.40445 5.45477 5.48934 5.64629 5.98463 6.09109 6.16397 6.30663 6.75316 6.87238 7.32064 8.88117 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.036655 B = 0.003244 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.700091 B = 8628.346021 C = 9056.114129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.532 4.532 8 H 0.033 0.967 9 C 0.000 4.000 10 C 0.084 3.916 11 N -0.549 5.549 12 C 0.054 3.946 13 C 0.083 3.917 14 N -0.469 5.469 15 C 0.475 3.525 16 N -0.540 5.540 17 C 0.154 3.846 18 C -0.039 4.039 19 F -0.120 7.120 20 C 0.155 3.845 21 N -0.526 5.526 22 C 0.085 3.915 23 C 0.054 3.946 24 H 0.266 0.734 25 H 0.019 0.981 26 H 0.022 0.978 27 H 0.067 0.933 28 H 0.021 0.979 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.210 0.790 34 H 0.211 0.789 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.095 -6.943 -1.577 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.051 0.949 9 C -0.037 4.037 10 C -0.043 4.043 11 N -0.274 5.274 12 C -0.074 4.074 13 C -0.043 4.043 14 N -0.189 5.189 15 C 0.119 3.881 16 N -0.260 5.260 17 C -0.014 4.014 18 C -0.065 4.065 19 F -0.099 7.099 20 C -0.014 4.014 21 N -0.244 5.244 22 C -0.042 4.042 23 C -0.074 4.074 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.227 0.773 34 H 0.228 0.772 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 26.876 -6.833 -1.575 27.776 hybrid contribution 0.615 0.432 -0.195 0.777 sum 27.491 -6.401 -1.770 28.282 Atomic orbital electron populations 1.70065 1.08310 1.28178 1.52661 1.25980 0.95574 1.03486 0.94071 0.85649 0.79508 0.78206 0.79245 1.19021 1.21087 1.17063 1.21423 0.91969 0.93188 1.50456 0.94895 1.19440 0.93290 0.94293 0.96726 1.21805 0.85045 0.97812 0.99632 1.62246 1.08166 1.22507 1.34499 1.22218 0.93179 1.01257 0.90755 1.22207 0.94290 0.85117 1.02712 1.58658 1.00810 1.23521 1.35885 1.21223 0.91258 0.90172 0.85400 1.68493 1.10284 1.21349 1.25846 1.23792 0.88511 0.91103 0.97982 1.19311 0.79251 1.08296 0.99625 1.91554 1.26883 1.94693 1.96750 1.23815 0.88355 0.91296 0.97896 1.68112 1.09662 1.19988 1.26612 1.22071 0.93263 1.01319 0.87565 1.22287 0.93789 0.89227 1.02120 0.92482 0.96248 0.95990 0.91499 0.96094 0.94082 0.89544 0.93171 0.87809 0.77301 0.77197 0.92355 0.88182 0.88486 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 2 C 0.01 0.33 5.47 84.66 0.46 0.80 16 3 Si 0.95 44.42 27.47 68.60 1.88 46.31 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.53 -30.72 9.66 25.60 0.25 -30.47 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C 0.00 0.01 3.97 29.85 0.12 0.13 16 10 C 0.08 3.32 4.90 86.30 0.42 3.74 16 11 N -0.55 -17.81 4.71 -895.72 -4.22 -22.03 16 12 C 0.05 1.62 5.41 86.31 0.47 2.09 16 13 C 0.08 2.12 5.46 86.31 0.47 2.60 16 14 N -0.47 -11.88 4.77 -708.26 -3.38 -15.26 16 15 C 0.47 11.19 7.17 261.45 1.88 13.06 16 16 N -0.54 -11.20 8.70 -197.78 -1.72 -12.92 16 17 C 0.15 2.24 11.29 84.75 0.96 3.20 16 18 C -0.04 -0.55 7.38 22.53 0.17 -0.38 16 19 F -0.12 -1.58 17.30 44.97 0.78 -0.80 16 20 C 0.15 2.31 11.29 84.75 0.96 3.27 16 21 N -0.53 -11.36 9.72 -197.78 -1.92 -13.28 16 22 C 0.08 2.02 4.77 86.31 0.41 2.43 16 23 C 0.05 1.43 5.61 86.31 0.48 1.91 16 24 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.02 0.88 5.93 -2.38 -0.01 0.86 16 26 H 0.02 1.04 7.19 -2.39 -0.02 1.02 16 27 H 0.07 2.63 8.03 -2.38 -0.02 2.61 16 28 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 2.72 6.34 -2.39 -0.02 2.70 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 2.48 7.64 -2.39 -0.02 2.47 16 33 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.06 1.46 8.03 -2.39 -0.02 1.44 16 36 H 0.10 2.16 7.81 -2.39 -0.02 2.14 16 37 H 0.10 2.36 8.07 -2.39 -0.02 2.34 16 38 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -68.68 313.75 -0.23 -68.91 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.01 Total: 6.34 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 7.04 Total: 2.37 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -10.94 Total: -123.13 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.78 Total: -0.80 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Total: -68.68 -0.23 -68.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273579302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.136 kcal (2) G-P(sol) polarization free energy of solvation -68.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds