Wall clock time and date at job start Tue Mar 31 2020 01:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35957 * 116.99948 * 2 1 4 4 C 1.38568 * 120.02643 * 359.97438 * 3 2 1 5 5 C 1.38799 * 119.90108 * 179.97438 * 4 3 2 6 6 N 1.39807 * 120.03295 * 179.97438 * 5 4 3 7 7 C 1.46895 * 111.00121 * 180.02562 * 6 5 4 8 8 C 1.53241 * 109.33538 * 187.24912 * 7 6 5 9 9 N 1.47082 * 108.52509 * 306.16899 * 8 7 6 10 10 C 1.36935 * 120.87800 * 231.18634 * 9 8 7 11 11 H 1.07994 * 120.00243 * 27.12925 * 10 9 8 12 12 C 1.38815 * 119.99552 * 206.84012 * 10 9 8 13 13 N 1.31614 * 119.99986 * 17.18837 * 12 10 9 14 14 Si 1.86797 * 120.00057 * 197.17547 * 12 10 9 15 15 H 1.48508 * 109.47149 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47196 * 120.00464 * 14 12 10 17 17 H 1.48497 * 109.47565 * 240.00842 * 14 12 10 18 18 C 1.47072 * 118.23374 * 51.45730 * 9 8 7 19 19 C 1.46908 * 110.99661 * 304.30083 * 6 5 4 20 20 C 1.38911 * 119.94286 * 0.25510 * 5 4 3 21 21 C 1.38179 * 120.05012 * 359.49008 * 20 5 4 22 22 C 1.38338 * 120.10046 * 0.50843 * 21 20 5 23 23 F 1.35102 * 119.97353 * 179.71991 * 22 21 20 24 24 H 1.08994 * 109.47166 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47474 * 300.00944 * 1 2 3 26 26 H 1.09008 * 109.46619 * 60.00127 * 1 2 3 27 27 H 1.08001 * 120.05276 * 0.02562 * 4 3 2 28 28 H 1.08994 * 109.49506 * 67.29245 * 7 6 5 29 29 H 1.08994 * 109.51398 * 307.21945 * 7 6 5 30 30 H 1.09003 * 109.62622 * 186.45689 * 8 7 6 31 31 H 1.09001 * 109.79122 * 65.97420 * 8 7 6 32 32 H 0.97002 * 120.00194 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.62781 * 68.25550 * 18 9 8 34 34 H 1.09007 * 109.62956 * 188.83247 * 18 9 8 35 35 H 1.09005 * 109.49135 * 292.70627 * 19 6 5 36 36 H 1.09006 * 109.49151 * 52.78387 * 19 6 5 37 37 H 1.08001 * 119.97365 * 179.74984 * 20 5 4 38 38 H 1.07995 * 119.95309 * 180.27641 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2921 2.3739 -0.0005 5 6 1.9249 3.6092 0.0000 6 7 1.1667 4.7838 -0.0011 7 6 2.0333 5.9699 -0.0009 8 6 1.1744 7.2259 0.1804 9 7 0.1221 7.2247 -0.8473 10 6 -0.0865 8.3211 -1.6407 11 1 0.7274 8.9997 -1.8490 12 6 -1.3428 8.5570 -2.1820 13 7 -2.3988 7.9498 -1.6836 14 14 -1.5347 9.7365 -3.6177 15 1 -0.2053 10.2843 -3.9894 16 1 -2.1138 9.0135 -4.7784 17 1 -2.4372 10.8492 -3.2272 18 6 -0.7039 6.0170 -0.9959 19 6 0.2331 4.8067 -1.1352 20 6 3.3123 3.6775 -0.0043 21 6 4.0622 2.5169 0.0016 22 6 3.4336 1.2846 0.0011 23 9 4.1693 0.1515 0.0011 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2134 2.3188 -0.0005 28 1 2.5689 6.0291 -0.9483 29 1 2.7492 5.8975 0.8178 30 1 1.7960 8.1141 0.0670 31 1 0.7190 7.2218 1.1707 32 1 -3.2766 8.1144 -2.0621 33 1 -1.3363 5.8954 -0.1165 34 1 -1.3248 6.1054 -1.8875 35 1 0.7943 4.8824 -2.0667 36 1 -0.3570 3.8902 -1.1390 37 1 3.8052 4.6385 -0.0079 38 1 5.1408 2.5719 0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282788925.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:10 Heat of formation + Delta-G solvation = -13.636384 kcal Electronic energy + Delta-G solvation = -22035.313735 eV Core-core repulsion = 18600.906380 eV Total energy + Delta-G solvation = -3434.407354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.60562 -40.34857 -38.81503 -36.72128 -34.31375 -31.64093 -30.81961 -29.83406 -29.16505 -27.34949 -26.03002 -23.64052 -23.31533 -21.70037 -21.45156 -19.36321 -18.40234 -17.08431 -16.76935 -16.66186 -16.11849 -15.72025 -14.98712 -14.79279 -14.60085 -14.39031 -14.34963 -13.83516 -13.59240 -13.36050 -13.07250 -12.61622 -12.51219 -12.15529 -11.76168 -11.67752 -11.29735 -11.15814 -11.11038 -10.80018 -10.64684 -10.48196 -10.23133 -9.88324 -9.80730 -9.36027 -8.60505 -8.46123 -7.51095 -6.80095 -5.88406 -3.30331 1.22265 1.31820 3.09038 3.31649 3.40146 3.41900 3.55375 4.06525 4.37265 4.42108 4.73506 4.94388 5.07708 5.14610 5.20246 5.26551 5.29502 5.39670 5.47167 5.50986 5.67934 5.79388 5.95172 5.97371 6.04734 6.11428 6.17945 6.22722 6.38800 6.49436 6.57868 6.78866 7.05658 7.20215 7.41610 7.51079 7.53351 7.71240 8.32215 9.10040 9.72861 10.30505 11.20778 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028916 B = 0.004119 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.080470 B = 6796.848580 C = 7334.421537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.121 3.879 4 C -0.212 4.212 5 C 0.159 3.841 6 N -0.482 5.482 7 C 0.037 3.963 8 C 0.146 3.854 9 N -0.595 5.595 10 C -0.255 4.255 11 H 0.068 0.932 12 C 0.003 3.997 13 N -0.903 5.903 14 Si 0.903 3.097 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.175 3.825 19 C 0.038 3.962 20 C -0.187 4.187 21 C -0.087 4.087 22 C 0.023 3.977 23 F -0.142 7.142 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.140 0.860 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.254 0.746 33 H 0.030 0.970 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.873 -12.129 3.123 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.074 3.926 4 C -0.233 4.233 5 C 0.058 3.942 6 N -0.195 5.195 7 C -0.091 4.091 8 C 0.019 3.981 9 N -0.318 5.318 10 C -0.384 4.384 11 H 0.086 0.914 12 C -0.196 4.196 13 N -0.548 5.548 14 Si 0.733 3.267 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.216 1.216 18 C 0.049 3.951 19 C -0.088 4.088 20 C -0.209 4.209 21 C -0.106 4.106 22 C 0.003 3.997 23 F -0.120 7.120 24 H 0.118 0.882 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.443 -12.205 3.470 14.711 hybrid contribution 0.051 0.486 -1.230 1.323 sum 7.494 -11.719 2.241 14.090 Atomic orbital electron populations 1.23115 0.77903 1.03961 1.01937 1.86105 1.21787 1.25949 1.88698 1.18768 0.90580 0.85139 0.98095 1.20708 1.00417 0.90035 1.12161 1.19044 0.91299 0.90885 0.92940 1.58978 1.18108 1.00332 1.42077 1.22892 0.95177 0.90764 1.00278 1.21025 0.90866 0.93486 0.92714 1.44154 1.37474 1.12552 1.37649 1.19238 0.93729 1.02978 1.22464 0.91401 1.25036 0.95146 0.98991 1.00387 1.70022 0.97895 1.46011 1.40828 0.86216 0.77740 0.80375 0.82401 1.20226 1.21510 1.21628 1.21034 0.90542 0.81639 1.01868 1.23205 0.94726 1.01863 0.88969 1.21153 0.92782 0.98710 1.08221 1.20791 1.00487 0.89971 0.99388 1.16790 0.85841 0.82832 1.14266 1.91447 1.76558 1.49128 1.94907 0.88153 0.92240 0.92283 0.84206 0.93644 0.90878 0.91963 0.95413 0.93545 0.95199 0.88756 0.94112 0.91470 0.84364 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.25 10.36 -19.60 -0.20 -4.45 16 3 C 0.12 1.75 6.69 -39.20 -0.26 1.49 16 4 C -0.21 -3.06 8.13 -39.25 -0.32 -3.38 16 5 C 0.16 2.45 5.65 -83.76 -0.47 1.98 16 6 N -0.48 -8.32 4.67 -170.53 -0.80 -9.12 16 7 C 0.04 0.62 4.30 -3.70 -0.02 0.61 16 8 C 0.15 2.93 6.69 -3.60 -0.02 2.90 16 9 N -0.60 -14.39 3.03 -171.73 -0.52 -14.91 16 10 C -0.25 -6.75 9.63 -15.06 -0.15 -6.90 16 11 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 12 C 0.00 0.08 4.93 -17.43 -0.09 -0.01 16 13 N -0.90 -25.38 11.16 55.49 0.62 -24.76 16 14 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.18 4.02 5.45 -3.37 -0.02 4.00 16 19 C 0.04 0.71 5.44 -3.46 -0.02 0.69 16 20 C -0.19 -2.56 8.83 -39.35 -0.35 -2.91 16 21 C -0.09 -1.11 10.01 -39.57 -0.40 -1.51 16 22 C 0.02 0.34 7.31 -39.29 -0.29 0.05 16 23 F -0.14 -2.12 17.11 2.25 0.04 -2.08 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 26 H 0.06 0.53 7.66 -51.92 -0.40 0.14 16 27 H 0.14 1.87 5.39 -52.49 -0.28 1.59 16 28 H 0.05 0.77 7.81 -51.93 -0.41 0.36 16 29 H 0.07 1.04 6.90 -51.93 -0.36 0.68 16 30 H 0.06 1.19 7.95 -51.93 -0.41 0.77 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 2.39 6.12 -51.93 -0.32 2.08 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.11 6.66 -51.93 -0.35 0.76 16 37 H 0.14 1.70 5.80 -52.49 -0.30 1.40 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -29.63 308.86 -7.52 -37.15 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.89 Total: -0.77 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.40 Total: -1.74 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.70 Total: -48.78 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.20 Total: -4.45 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.63 -7.52 -37.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282788925.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.517 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds