Wall clock time and date at job start Tue Mar 31 2020 01:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35957 * 116.99948 * 2 1 4 4 C 1.38568 * 120.02643 * 359.97438 * 3 2 1 5 5 C 1.38799 * 119.90108 * 179.97438 * 4 3 2 6 6 N 1.39807 * 120.03295 * 179.97438 * 5 4 3 7 7 C 1.46895 * 111.00121 * 180.02562 * 6 5 4 8 8 C 1.53241 * 109.33538 * 187.24912 * 7 6 5 9 9 N 1.47082 * 108.52509 * 306.16899 * 8 7 6 10 10 C 1.36935 * 120.87800 * 231.18634 * 9 8 7 11 11 H 1.07994 * 120.00243 * 27.12925 * 10 9 8 12 12 C 1.38815 * 119.99552 * 206.84012 * 10 9 8 13 13 N 1.31614 * 119.99986 * 17.18837 * 12 10 9 14 14 Si 1.86797 * 120.00057 * 197.17547 * 12 10 9 15 15 H 1.48508 * 109.47149 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47196 * 120.00464 * 14 12 10 17 17 H 1.48497 * 109.47565 * 240.00842 * 14 12 10 18 18 C 1.47072 * 118.23374 * 51.45730 * 9 8 7 19 19 C 1.46908 * 110.99661 * 304.30083 * 6 5 4 20 20 C 1.38911 * 119.94286 * 0.25510 * 5 4 3 21 21 C 1.38179 * 120.05012 * 359.49008 * 20 5 4 22 22 C 1.38338 * 120.10046 * 0.50843 * 21 20 5 23 23 F 1.35102 * 119.97353 * 179.71991 * 22 21 20 24 24 H 1.08994 * 109.47166 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47474 * 300.00944 * 1 2 3 26 26 H 1.09008 * 109.46619 * 60.00127 * 1 2 3 27 27 H 1.08001 * 120.05276 * 0.02562 * 4 3 2 28 28 H 1.08994 * 109.49506 * 67.29245 * 7 6 5 29 29 H 1.08994 * 109.51398 * 307.21945 * 7 6 5 30 30 H 1.09003 * 109.62622 * 186.45689 * 8 7 6 31 31 H 1.09001 * 109.79122 * 65.97420 * 8 7 6 32 32 H 0.97002 * 120.00194 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.62781 * 68.25550 * 18 9 8 34 34 H 1.09007 * 109.62956 * 188.83247 * 18 9 8 35 35 H 1.09005 * 109.49135 * 292.70627 * 19 6 5 36 36 H 1.09006 * 109.49151 * 52.78387 * 19 6 5 37 37 H 1.08001 * 119.97365 * 179.74984 * 20 5 4 38 38 H 1.07995 * 119.95309 * 180.27641 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2921 2.3739 -0.0005 5 6 1.9249 3.6092 0.0000 6 7 1.1667 4.7838 -0.0011 7 6 2.0333 5.9699 -0.0009 8 6 1.1744 7.2259 0.1804 9 7 0.1221 7.2247 -0.8473 10 6 -0.0865 8.3211 -1.6407 11 1 0.7274 8.9997 -1.8490 12 6 -1.3428 8.5570 -2.1820 13 7 -2.3988 7.9498 -1.6836 14 14 -1.5347 9.7365 -3.6177 15 1 -0.2053 10.2843 -3.9894 16 1 -2.1138 9.0135 -4.7784 17 1 -2.4372 10.8492 -3.2272 18 6 -0.7039 6.0170 -0.9959 19 6 0.2331 4.8067 -1.1352 20 6 3.3123 3.6775 -0.0043 21 6 4.0622 2.5169 0.0016 22 6 3.4336 1.2846 0.0011 23 9 4.1693 0.1515 0.0011 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2134 2.3188 -0.0005 28 1 2.5689 6.0291 -0.9483 29 1 2.7492 5.8975 0.8178 30 1 1.7960 8.1141 0.0670 31 1 0.7190 7.2218 1.1707 32 1 -3.2766 8.1144 -2.0621 33 1 -1.3363 5.8954 -0.1165 34 1 -1.3248 6.1054 -1.8875 35 1 0.7943 4.8824 -2.0667 36 1 -0.3570 3.8902 -1.1390 37 1 3.8052 4.6385 -0.0079 38 1 5.1408 2.5719 0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282788925.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:10 Heat of formation + Delta-G solvation = -31.714635 kcal Electronic energy + Delta-G solvation = -22036.097666 eV Core-core repulsion = 18600.906380 eV Total energy + Delta-G solvation = -3435.191286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.72591 -41.49183 -40.00616 -38.05563 -35.90567 -33.38374 -32.22784 -31.14352 -30.41480 -28.47505 -27.50512 -25.18341 -24.82242 -22.90727 -22.75581 -20.95143 -19.55311 -18.70637 -17.95038 -17.83445 -17.14010 -17.11765 -16.59721 -16.00692 -15.84089 -15.70532 -15.42911 -15.30068 -15.14689 -15.03565 -14.59914 -13.81484 -13.63401 -13.30582 -13.26795 -13.01896 -12.72785 -12.53278 -12.44085 -12.33850 -12.17002 -12.08725 -11.89550 -11.61591 -11.54660 -10.65512 -10.52692 -9.55187 -8.79592 -8.66354 -7.90205 -5.34720 0.12575 0.24828 1.46528 1.49228 1.59000 2.17489 2.41882 2.50697 2.81810 3.26480 3.30233 3.61499 3.71574 3.98559 4.10361 4.14488 4.24093 4.29904 4.35188 4.44936 4.49594 4.55150 4.59729 4.62485 4.72499 4.77725 4.90965 4.96598 5.05474 5.15792 5.26342 5.32951 5.54291 5.60226 5.64129 5.98399 6.16426 6.34446 6.35378 7.10909 7.80300 8.34184 9.17312 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028916 B = 0.004119 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.080470 B = 6796.848580 C = 7334.421537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.115 3.885 4 C -0.213 4.213 5 C 0.141 3.859 6 N -0.491 5.491 7 C 0.048 3.952 8 C 0.141 3.859 9 N -0.614 5.614 10 C -0.264 4.264 11 H 0.071 0.929 12 C -0.048 4.048 13 N -0.935 5.935 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.290 1.290 17 H -0.293 1.293 18 C 0.184 3.816 19 C 0.056 3.944 20 C -0.184 4.184 21 C -0.076 4.076 22 C 0.009 3.991 23 F -0.147 7.147 24 H 0.125 0.875 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.145 0.855 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.018 0.982 32 H 0.251 0.749 33 H 0.003 0.997 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 -12.734 3.041 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.068 3.932 4 C -0.234 4.234 5 C 0.042 3.958 6 N -0.205 5.205 7 C -0.080 4.080 8 C 0.016 3.984 9 N -0.338 5.338 10 C -0.394 4.394 11 H 0.089 0.911 12 C -0.244 4.244 13 N -0.582 5.582 14 Si 0.794 3.206 15 H -0.190 1.190 16 H -0.217 1.217 17 H -0.220 1.220 18 C 0.057 3.943 19 C -0.070 4.070 20 C -0.205 4.205 21 C -0.095 4.095 22 C -0.011 4.011 23 F -0.126 7.126 24 H 0.144 0.856 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.163 0.837 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.173 0.827 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.232 -12.831 3.404 16.169 hybrid contribution -0.467 0.598 -1.139 1.369 sum 8.764 -12.233 2.264 15.218 Atomic orbital electron populations 1.23392 0.76008 1.05855 1.02355 1.86093 1.23792 1.25683 1.88557 1.18891 0.90877 0.85452 0.98016 1.20756 1.00802 0.89868 1.12003 1.19096 0.92046 0.90145 0.94530 1.58911 1.18661 1.01316 1.41624 1.22764 0.94675 0.88908 1.01638 1.21178 0.90285 0.95906 0.91048 1.44429 1.38304 1.12394 1.38639 1.19576 0.93791 1.03436 1.22551 0.91136 1.25760 0.94947 1.00941 1.02715 1.70170 0.98094 1.47739 1.42149 0.85228 0.77808 0.78223 0.79303 1.19048 1.21685 1.22023 1.20761 0.90989 0.83375 0.99136 1.22844 0.94438 1.00293 0.89464 1.21336 0.92005 0.99786 1.07335 1.21070 1.01953 0.88843 0.97670 1.17131 0.86071 0.83304 1.14610 1.91433 1.76629 1.49547 1.94981 0.85641 0.91775 0.91868 0.83706 0.93438 0.87674 0.91146 0.96447 0.94008 0.97846 0.91809 0.94710 0.89622 0.82679 0.81409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.43 10.36 -93.06 -0.96 -9.39 16 3 C 0.11 3.13 6.69 22.51 0.15 3.28 16 4 C -0.21 -5.79 8.13 22.48 0.18 -5.61 16 5 C 0.14 4.04 5.65 38.16 0.22 4.26 16 6 N -0.49 -16.20 4.67 -693.42 -3.24 -19.44 16 7 C 0.05 1.50 4.30 86.38 0.37 1.87 16 8 C 0.14 5.57 6.69 86.35 0.58 6.15 16 9 N -0.61 -29.92 3.03 -697.24 -2.11 -32.03 16 10 C -0.26 -14.06 9.63 84.03 0.81 -13.25 16 11 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 12 C -0.05 -2.62 4.93 84.86 0.42 -2.20 16 13 N -0.94 -54.02 11.16 21.65 0.24 -53.77 16 14 Si 0.97 43.68 29.59 68.60 2.03 45.71 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 18 C 0.18 8.61 5.45 86.50 0.47 9.09 16 19 C 0.06 2.05 5.44 86.54 0.47 2.52 16 20 C -0.18 -4.42 8.83 22.42 0.20 -4.23 16 21 C -0.08 -1.70 10.01 22.28 0.22 -1.48 16 22 C 0.01 0.25 7.31 22.46 0.16 0.42 16 23 F -0.15 -4.14 17.11 44.97 0.77 -3.37 16 24 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 26 H 0.06 1.05 7.66 -2.38 -0.02 1.03 16 27 H 0.15 3.69 5.39 -2.91 -0.02 3.67 16 28 H 0.05 1.48 7.81 -2.39 -0.02 1.47 16 29 H 0.11 2.63 6.90 -2.39 -0.02 2.62 16 30 H 0.07 2.61 7.95 -2.39 -0.02 2.59 16 31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.06 3.36 6.12 -2.38 -0.01 3.35 16 35 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.09 2.77 6.66 -2.38 -0.02 2.75 16 37 H 0.16 3.18 5.80 -2.91 -0.02 3.16 16 38 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -64.09 308.86 3.16 -60.93 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.07 Total: 9.13 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.36 Total: 2.24 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -5.11 Total: -105.24 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.96 Total: -9.39 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.77 Total: -3.37 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -64.09 3.16 -60.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282788925.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.212 kcal (2) G-P(sol) polarization free energy of solvation -64.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds