Wall clock time and date at job start Tue Mar 31 2020 01:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47046 * 299.99623 * 3 2 1 6 6 H 1.48496 * 109.47392 * 59.99777 * 3 2 1 7 7 C 1.38810 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99618 * 163.17303 * 7 2 1 9 9 N 1.36935 * 120.00391 * 343.16653 * 7 2 1 10 10 C 1.46926 * 120.63241 * 151.92989 * 9 7 2 11 11 C 1.53189 * 108.89548 * 126.46715 * 10 9 7 12 12 C 1.53049 * 109.31006 * 54.56312 * 11 10 9 13 13 C 1.52999 * 109.45630 * 178.61578 * 12 11 10 14 14 N 1.46502 * 109.46567 * 185.00496 * 13 12 11 15 15 C 1.38551 * 119.99639 * 180.02562 * 14 13 12 16 16 N 1.32455 * 119.18547 * 359.72197 * 15 14 13 17 17 C 1.32296 * 120.76147 * 179.76008 * 16 15 14 18 18 C 1.38785 * 119.16741 * 0.50391 * 17 16 15 19 19 F 1.35093 * 120.74638 * 179.72473 * 18 17 16 20 20 C 1.38782 * 118.50981 * 359.75690 * 18 17 16 21 21 N 1.32302 * 119.16905 * 359.97438 * 20 18 17 22 22 C 1.53038 * 109.53915 * 298.63665 * 12 11 10 23 23 C 1.46960 * 120.65281 * 331.75570 * 9 7 2 24 24 H 0.97000 * 119.99586 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.58436 * 6.60522 * 10 9 7 26 26 H 1.08996 * 109.58760 * 246.33067 * 10 9 7 27 27 H 1.09001 * 109.49772 * 174.51715 * 11 10 9 28 28 H 1.08999 * 109.49563 * 294.61749 * 11 10 9 29 29 H 1.08997 * 109.45734 * 58.65662 * 12 11 10 30 30 H 1.09006 * 109.46769 * 304.99999 * 13 12 11 31 31 H 1.08994 * 109.47708 * 65.00219 * 13 12 11 32 32 H 0.96990 * 120.00673 * 359.97438 * 14 13 12 33 33 H 1.07997 * 120.41901 * 180.23546 * 17 16 15 34 34 H 1.07998 * 120.41631 * 179.97438 * 20 18 17 35 35 H 1.08995 * 109.49486 * 181.31850 * 22 12 11 36 36 H 1.08997 * 109.49624 * 301.38055 * 22 12 11 37 37 H 1.08994 * 109.46893 * 113.74819 * 23 9 7 38 38 H 1.09005 * 109.71148 * 353.45478 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0555 -1.2223 -0.2702 9 7 1.3696 -2.3625 0.3445 10 6 1.8155 -3.6530 -0.1982 11 6 2.0656 -4.6198 0.9635 12 6 0.8080 -4.7040 1.8317 13 6 1.0423 -5.6951 2.9734 14 7 -0.1983 -5.8661 3.7337 15 6 -0.2307 -6.7215 4.8232 16 7 0.8677 -7.3808 5.1596 17 6 0.8731 -8.2018 6.1970 18 6 -0.2936 -8.3754 6.9283 19 9 -0.3254 -9.2102 7.9899 20 6 -1.4270 -7.6727 6.5440 21 7 -1.3607 -6.8637 5.4993 22 6 0.4931 -3.3232 2.4116 23 6 0.2252 -2.3417 1.2663 24 1 -0.4849 0.8401 -0.0004 25 1 2.7377 -3.5132 -0.7622 26 1 1.0450 -4.0600 -0.8529 27 1 2.3026 -5.6082 0.5696 28 1 2.8993 -4.2578 1.5650 29 1 -0.0310 -5.0424 1.2236 30 1 1.3520 -6.6560 2.5625 31 1 1.8223 -5.3131 3.6320 32 1 -0.9967 -5.3801 3.4749 33 1 1.7729 -8.7337 6.4687 34 1 -2.3514 -7.7849 7.0909 35 1 -0.3890 -3.3887 3.0485 36 1 1.3414 -2.9737 3.0000 37 1 -0.6768 -2.6406 0.7324 38 1 0.0957 -1.3370 1.6689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301756227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:05 Heat of formation + Delta-G solvation = 9.729129 kcal Electronic energy + Delta-G solvation = -21273.509123 eV Core-core repulsion = 17872.407725 eV Total energy + Delta-G solvation = -3401.101398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.80912 -41.91794 -39.64462 -37.10291 -34.89744 -34.84510 -32.76816 -31.51692 -30.85338 -28.15280 -26.20922 -25.51016 -24.17804 -23.62855 -22.51970 -20.76681 -19.44569 -18.91128 -18.62476 -18.35358 -17.03123 -16.85309 -16.26518 -16.00817 -15.70517 -15.53892 -15.29082 -15.08651 -15.00227 -14.73099 -14.04671 -13.94813 -13.84820 -13.52971 -13.06708 -12.86490 -12.75932 -12.58144 -12.27177 -12.05357 -11.96856 -11.84954 -11.60135 -11.30637 -11.14971 -11.00543 -10.54164 -10.17713 -9.00261 -8.66791 -7.87443 -5.32477 -0.04118 -0.00207 1.45058 1.47253 1.57559 1.81016 2.51065 2.70222 3.00216 3.09824 3.27227 3.63022 3.71530 3.85727 3.87234 3.92064 3.97129 4.10307 4.54665 4.55773 4.64749 4.70394 4.76124 4.78189 4.94177 5.04754 5.18091 5.25304 5.30071 5.32946 5.42644 5.53582 5.63014 5.67898 5.78542 5.97818 6.36804 6.40128 7.15805 7.17969 7.88118 8.38929 9.18831 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.037390 B = 0.003078 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.678492 B = 9094.145391 C = 9344.235809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.053 4.053 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.612 5.612 10 C 0.140 3.860 11 C -0.112 4.112 12 C -0.081 4.081 13 C 0.157 3.843 14 N -0.689 5.689 15 C 0.545 3.455 16 N -0.562 5.562 17 C 0.174 3.826 18 C -0.082 4.082 19 F -0.128 7.128 20 C 0.174 3.826 21 N -0.569 5.569 22 C -0.119 4.119 23 C 0.177 3.823 24 H 0.249 0.751 25 H 0.054 0.946 26 H 0.014 0.986 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.417 0.583 33 H 0.206 0.794 34 H 0.206 0.794 35 H 0.063 0.937 36 H 0.047 0.953 37 H -0.004 1.004 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 -18.058 12.671 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.336 5.336 10 C 0.014 3.986 11 C -0.151 4.151 12 C -0.100 4.100 13 C 0.033 3.967 14 N -0.325 5.325 15 C 0.188 3.812 16 N -0.285 5.285 17 C 0.005 3.995 18 C -0.110 4.110 19 F -0.107 7.107 20 C 0.005 3.995 21 N -0.292 5.292 22 C -0.159 4.159 23 C 0.051 3.949 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.256 0.744 33 H 0.223 0.777 34 H 0.222 0.778 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.014 0.986 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.330 -17.280 11.726 20.885 hybrid contribution -0.295 0.790 0.572 1.019 sum 0.034 -16.490 12.297 20.570 Atomic orbital electron populations 1.70193 1.06641 1.25668 1.55663 1.25797 0.96061 1.01495 1.01471 0.85238 0.78697 0.79991 0.76726 1.19044 1.21935 1.21797 1.19554 0.92795 0.86137 1.40584 0.91631 1.44347 1.35938 1.02449 1.50896 1.21066 0.97283 0.85911 0.94314 1.21829 0.96555 0.99711 0.97019 1.21188 0.99236 0.93911 0.95692 1.21319 0.84654 0.98944 0.91794 1.44392 1.15246 1.44927 1.27904 1.19620 0.85233 0.88305 0.88041 1.68064 1.28645 1.12521 1.19233 1.23625 0.98108 0.90826 0.86920 1.19100 0.98424 1.00770 0.92695 1.91508 1.97023 1.69068 1.53083 1.23583 0.98838 0.87012 0.90097 1.68019 1.27197 1.23388 1.10552 1.22014 1.00441 0.95563 0.97835 1.20565 0.87768 0.97478 0.89071 0.94212 0.92782 0.96793 0.89380 0.92295 0.90996 0.90562 0.91997 0.74440 0.77694 0.77764 0.91884 0.93398 0.98596 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.70 11.20 21.65 0.24 -55.46 16 2 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 3 Si 0.97 45.14 29.59 68.60 2.03 47.17 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 7 C -0.26 -14.36 9.58 84.03 0.81 -13.55 16 8 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 9 N -0.61 -30.50 3.00 -699.02 -2.10 -32.60 16 10 C 0.14 5.56 6.51 86.36 0.56 6.12 16 11 C -0.11 -3.38 5.36 30.67 0.16 -3.22 16 12 C -0.08 -2.35 2.19 -10.76 -0.02 -2.37 16 13 C 0.16 3.82 5.04 86.38 0.44 4.25 16 14 N -0.69 -16.91 5.43 -350.97 -1.90 -18.82 16 15 C 0.54 13.58 8.43 261.45 2.20 15.79 16 16 N -0.56 -12.96 9.58 -197.77 -1.90 -14.85 16 17 C 0.17 3.02 11.29 84.75 0.96 3.97 16 18 C -0.08 -1.39 7.38 22.53 0.17 -1.22 16 19 F -0.13 -2.08 17.29 44.97 0.78 -1.30 16 20 C 0.17 3.05 11.29 84.75 0.96 4.01 16 21 N -0.57 -13.32 10.46 -197.77 -2.07 -15.39 16 22 C -0.12 -4.26 5.25 30.67 0.16 -4.10 16 23 C 0.18 8.42 5.30 86.36 0.46 8.88 16 24 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.42 10.08 7.76 -92.72 -0.72 9.36 16 33 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.21 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.06 2.02 7.15 -2.39 -0.02 2.00 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.05 2.66 6.07 -2.38 -0.01 2.65 16 Total: -1.00 -66.16 316.77 2.70 -63.45 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.35 Total: 11.81 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 7.26 Total: 15.99 kcal Atomic # 7 Polarization: -129.40 SS G_CDS: -7.72 Total: -137.12 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.30 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.16 2.70 -63.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301756227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.182 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds