Wall clock time and date at job start Tue Mar 31 2020 02:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47315 * 264.90210 * 3 2 1 5 5 H 1.48498 * 109.46950 * 24.90035 * 3 2 1 6 6 H 1.48497 * 109.47133 * 144.90325 * 3 2 1 7 7 C 1.37882 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99698 * 4.77060 * 7 2 1 9 9 C 1.50697 * 120.00116 * 184.76840 * 7 2 1 10 10 C 1.52998 * 115.56219 * 89.05088 * 9 7 2 11 11 N 1.46502 * 109.47143 * 330.47128 * 10 9 7 12 12 C 1.30103 * 119.99811 * 118.06380 * 11 10 9 13 13 O 1.35097 * 119.99528 * 186.59417 * 12 11 10 14 14 N 1.37335 * 120.00227 * 6.59364 * 12 11 10 15 15 C 1.46497 * 120.00226 * 185.50225 * 14 12 11 16 16 H 1.09004 * 110.34338 * 35.82496 * 15 14 12 17 17 C 1.51108 * 110.38266 * 273.54392 * 15 14 12 18 18 C 1.30527 * 111.10226 * 224.74673 * 17 15 14 19 19 C 1.51099 * 111.10669 * 0.02562 * 18 17 15 20 20 H 1.09001 * 110.38325 * 257.62507 * 19 18 17 21 21 C 1.52998 * 110.38852 * 135.35960 * 19 18 17 22 22 O 1.42893 * 109.47395 * 66.45242 * 21 19 18 23 23 C 1.54625 * 110.39195 * 158.24204 * 15 14 12 24 24 C 1.53007 * 117.49552 * 303.36434 * 9 7 2 25 25 C 1.52998 * 60.00048 * 252.50836 * 24 9 7 26 26 H 0.96999 * 119.99737 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46795 * 90.46944 * 10 9 7 28 28 H 1.08999 * 109.47040 * 210.46837 * 10 9 7 29 29 H 0.96703 * 113.99310 * 179.97438 * 13 12 11 30 30 H 0.97001 * 120.00010 * 5.49612 * 14 12 11 31 31 H 1.07997 * 124.44560 * 44.72944 * 17 15 14 32 32 H 1.07996 * 124.44467 * 180.02562 * 18 17 15 33 33 H 1.09000 * 109.46612 * 186.45560 * 21 19 18 34 34 H 1.09002 * 109.46746 * 306.44628 * 21 19 18 35 35 H 0.96700 * 114.00475 * 179.97438 * 22 21 19 36 36 H 1.09006 * 111.03890 * 261.47478 * 23 15 14 37 37 H 1.09008 * 111.03675 * 25.40608 * 23 15 14 38 38 H 1.09000 * 117.50190 * 0.02562 * 24 9 7 39 39 H 1.09000 * 117.49353 * 145.01871 * 24 9 7 40 40 H 1.08999 * 117.50382 * 252.51669 * 25 24 9 41 41 H 1.09003 * 117.49813 * 107.48903 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6045 1.9842 -1.3945 5 1 1.3969 2.6813 0.5895 6 1 3.4887 1.4736 0.8050 7 6 2.0046 -1.1941 -0.0005 8 1 1.4673 -2.1277 -0.0787 9 6 3.5076 -1.1965 0.1080 10 6 4.0667 -1.2326 1.5317 11 7 3.1263 -0.5751 2.4425 12 6 2.5785 -1.2501 3.4105 13 8 1.6133 -0.6836 4.1671 14 7 2.9815 -2.5385 3.6631 15 6 2.2840 -3.3398 4.6718 16 1 1.2182 -3.1111 4.6668 17 6 2.8699 -3.0876 6.0417 18 6 3.0468 -4.2063 6.6904 19 6 2.6089 -5.3912 5.8612 20 1 1.6351 -5.7492 6.1953 21 6 3.6457 -6.5131 5.9454 22 8 3.6835 -7.0278 7.2779 23 6 2.5153 -4.8472 4.4169 24 6 4.2927 -0.4042 -0.9394 25 6 4.2932 -1.9337 -0.9785 26 1 -0.4850 0.8401 0.0004 27 1 4.2076 -2.2685 1.8404 28 1 5.0238 -0.7118 1.5595 29 1 1.2670 -1.2620 4.8605 30 1 3.7280 -2.9180 3.1735 31 1 3.1110 -2.1101 6.4324 32 1 3.4528 -4.2760 7.6887 33 1 3.3739 -7.3115 5.2550 34 1 4.6274 -6.1212 5.6792 35 1 4.3204 -7.7443 7.4049 36 1 1.6715 -5.2884 3.8863 37 1 3.4465 -5.0141 3.8752 38 1 3.7220 0.1191 -1.7067 39 1 5.2075 0.0912 -0.6141 40 1 5.2083 -2.4445 -0.6789 41 1 3.7228 -2.4171 -1.7717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330237707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:08 Heat of formation + Delta-G solvation = 1.142922 kcal Electronic energy + Delta-G solvation = -22327.659808 eV Core-core repulsion = 19017.353638 eV Total energy + Delta-G solvation = -3310.306170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99358 -38.29258 -36.93726 -36.53789 -34.41271 -32.08150 -31.78065 -30.06856 -27.81355 -26.17742 -25.02852 -23.85540 -21.56725 -20.97545 -20.48062 -19.24461 -18.48737 -18.26142 -17.60153 -16.66383 -16.06215 -15.95380 -15.07857 -14.58932 -14.32968 -14.25839 -13.70643 -13.50124 -13.28342 -12.91779 -12.58975 -12.33809 -12.17293 -12.07038 -11.89753 -11.77592 -11.53006 -11.45012 -10.93273 -10.56715 -10.28202 -10.18726 -10.07230 -9.60076 -9.41799 -9.25426 -8.97224 -8.51030 -8.26246 -7.93632 -7.28450 -5.81989 -3.85535 2.03151 3.37621 3.61716 3.64748 3.72191 3.87600 3.93187 4.20154 4.33487 4.42881 4.75719 4.85020 4.96014 5.02718 5.03486 5.08945 5.23537 5.34855 5.51812 5.54269 5.64294 5.84009 5.94108 5.97649 5.99956 6.19351 6.27569 6.38526 6.43727 6.53314 6.62142 6.64355 6.79756 6.84291 7.21319 7.26502 7.28288 7.55399 8.01914 8.31051 8.71254 9.12675 9.30549 9.87223 11.29345 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.004482 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.742542 B = 6245.151070 C = 6700.433110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.099 3.901 3 Si 0.898 3.102 4 H -0.298 1.298 5 H -0.306 1.306 6 H -0.243 1.243 7 C -0.483 4.483 8 H 0.066 0.934 9 C 0.013 3.987 10 C 0.113 3.887 11 N -0.554 5.554 12 C 0.551 3.449 13 O -0.459 6.459 14 N -0.772 5.772 15 C 0.159 3.841 16 H 0.090 0.910 17 C -0.185 4.185 18 C -0.141 4.141 19 C -0.069 4.069 20 H 0.093 0.907 21 C 0.084 3.916 22 O -0.573 6.573 23 C -0.117 4.117 24 C -0.203 4.203 25 C -0.187 4.187 26 H 0.260 0.740 27 H 0.019 0.981 28 H 0.052 0.948 29 H 0.390 0.610 30 H 0.408 0.592 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.378 0.622 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.092 -12.944 13.841 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.104 4.104 3 Si 0.728 3.272 4 H -0.226 1.226 5 H -0.233 1.233 6 H -0.167 1.167 7 C -0.520 4.520 8 H 0.084 0.916 9 C 0.012 3.988 10 C -0.017 4.017 11 N -0.295 5.295 12 C 0.238 3.762 13 O -0.252 6.252 14 N -0.430 5.430 15 C 0.051 3.949 16 H 0.107 0.893 17 C -0.205 4.205 18 C -0.160 4.160 19 C -0.087 4.087 20 H 0.111 0.889 21 C 0.007 3.993 22 O -0.379 6.379 23 C -0.155 4.155 24 C -0.241 4.241 25 C -0.225 4.225 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.242 0.758 30 H 0.248 0.752 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.356 -10.958 13.331 18.760 hybrid contribution 1.072 -0.920 0.231 1.431 sum 8.428 -11.879 13.562 19.901 Atomic orbital electron populations 1.69916 1.06752 1.26896 1.50737 1.24778 0.94220 0.99169 0.92205 0.86563 0.81642 0.82433 0.76512 1.22593 1.23346 1.16661 1.19941 0.86386 0.94004 1.51660 0.91641 1.19498 0.94863 0.98407 0.86048 1.21343 0.93172 0.93807 0.93370 1.72198 1.19829 1.31775 1.05688 1.20416 0.87876 0.78644 0.89229 1.84968 1.50671 1.42607 1.46921 1.46103 1.38883 1.13761 1.44283 1.20696 0.96792 0.91151 0.86217 0.89255 1.23886 1.00967 0.99002 0.96601 1.23147 0.99366 0.93770 0.99681 1.21024 0.99376 0.93858 0.94455 0.88930 1.22204 0.98321 0.95275 0.83546 1.86473 1.65148 1.56365 1.29879 1.22698 1.03495 0.93763 0.95570 1.23022 1.01824 0.93615 1.05590 1.22871 1.01284 0.93891 1.04469 0.93086 0.96264 0.92995 0.75765 0.75208 0.85477 0.85525 0.93383 0.93409 0.77505 0.89467 0.90131 0.89677 0.91086 0.91386 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.13 13.96 55.43 0.77 -28.36 16 2 C 0.10 3.01 5.24 -17.82 -0.09 2.92 16 3 Si 0.90 24.85 23.78 -169.99 -4.04 20.80 16 4 H -0.30 -8.03 6.92 56.52 0.39 -7.64 16 5 H -0.31 -8.65 7.11 56.52 0.40 -8.25 16 6 H -0.24 -6.59 6.42 56.52 0.36 -6.23 16 7 C -0.48 -14.07 8.68 -34.44 -0.30 -14.37 16 8 H 0.07 2.09 8.06 -52.49 -0.42 1.66 16 9 C 0.01 0.32 1.40 -155.66 -0.22 0.10 16 10 C 0.11 2.45 6.27 -4.04 -0.03 2.43 16 11 N -0.55 -13.05 8.07 -62.52 -0.50 -13.56 16 12 C 0.55 10.90 8.82 -88.57 -0.78 10.12 16 13 O -0.46 -8.61 13.61 -17.00 -0.23 -8.84 16 14 N -0.77 -11.55 5.07 -56.11 -0.28 -11.84 16 15 C 0.16 1.80 2.82 -68.03 -0.19 1.61 16 16 H 0.09 1.00 6.97 -51.93 -0.36 0.64 16 17 C -0.18 -1.87 10.09 -35.69 -0.36 -2.23 16 18 C -0.14 -1.33 9.92 -35.70 -0.35 -1.68 16 19 C -0.07 -0.60 3.18 -90.72 -0.29 -0.89 16 20 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 21 C 0.08 0.64 6.38 37.16 0.24 0.88 16 22 O -0.57 -4.58 13.48 -35.23 -0.47 -5.06 16 23 C -0.12 -1.11 6.39 -25.02 -0.16 -1.27 16 24 C -0.20 -4.63 7.32 -26.73 -0.20 -4.83 16 25 C -0.19 -3.93 9.95 -26.73 -0.27 -4.19 16 26 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 27 H 0.02 0.36 5.41 -51.93 -0.28 0.08 16 28 H 0.05 1.07 7.88 -51.93 -0.41 0.67 16 29 H 0.39 5.04 6.40 45.56 0.29 5.33 16 30 H 0.41 5.97 5.81 -40.82 -0.24 5.73 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.38 1.35 9.12 45.56 0.42 1.77 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.74 7.57 -51.92 -0.39 0.35 16 38 H 0.08 2.07 6.54 -51.93 -0.34 1.73 16 39 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -36.84 329.96 -7.51 -44.35 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.72 Total: 8.94 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.00 Total: -11.41 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.02 Total: -53.76 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.71 Total: -13.90 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -4.04 Total: 20.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.84 -7.51 -44.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330237707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.494 kcal (2) G-P(sol) polarization free energy of solvation -36.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds