Wall clock time and date at job start Tue Mar 31 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47315 * 264.90210 * 3 2 1 5 5 H 1.48498 * 109.46950 * 24.90035 * 3 2 1 6 6 H 1.48497 * 109.47133 * 144.90325 * 3 2 1 7 7 C 1.37882 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99698 * 4.77060 * 7 2 1 9 9 C 1.50697 * 120.00116 * 184.76840 * 7 2 1 10 10 C 1.52998 * 115.56219 * 89.05088 * 9 7 2 11 11 N 1.46502 * 109.47143 * 330.47128 * 10 9 7 12 12 C 1.30103 * 119.99811 * 118.06380 * 11 10 9 13 13 O 1.35097 * 119.99528 * 186.59417 * 12 11 10 14 14 N 1.37335 * 120.00227 * 6.59364 * 12 11 10 15 15 C 1.46497 * 120.00226 * 185.50225 * 14 12 11 16 16 H 1.09004 * 110.34338 * 35.82496 * 15 14 12 17 17 C 1.51108 * 110.38266 * 273.54392 * 15 14 12 18 18 C 1.30527 * 111.10226 * 224.74673 * 17 15 14 19 19 C 1.51099 * 111.10669 * 0.02562 * 18 17 15 20 20 H 1.09001 * 110.38325 * 257.62507 * 19 18 17 21 21 C 1.52998 * 110.38852 * 135.35960 * 19 18 17 22 22 O 1.42893 * 109.47395 * 66.45242 * 21 19 18 23 23 C 1.54625 * 110.39195 * 158.24204 * 15 14 12 24 24 C 1.53007 * 117.49552 * 303.36434 * 9 7 2 25 25 C 1.52998 * 60.00048 * 252.50836 * 24 9 7 26 26 H 0.96999 * 119.99737 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46795 * 90.46944 * 10 9 7 28 28 H 1.08999 * 109.47040 * 210.46837 * 10 9 7 29 29 H 0.96703 * 113.99310 * 179.97438 * 13 12 11 30 30 H 0.97001 * 120.00010 * 5.49612 * 14 12 11 31 31 H 1.07997 * 124.44560 * 44.72944 * 17 15 14 32 32 H 1.07996 * 124.44467 * 180.02562 * 18 17 15 33 33 H 1.09000 * 109.46612 * 186.45560 * 21 19 18 34 34 H 1.09002 * 109.46746 * 306.44628 * 21 19 18 35 35 H 0.96700 * 114.00475 * 179.97438 * 22 21 19 36 36 H 1.09006 * 111.03890 * 261.47478 * 23 15 14 37 37 H 1.09008 * 111.03675 * 25.40608 * 23 15 14 38 38 H 1.09000 * 117.50190 * 0.02562 * 24 9 7 39 39 H 1.09000 * 117.49353 * 145.01871 * 24 9 7 40 40 H 1.08999 * 117.50382 * 252.51669 * 25 24 9 41 41 H 1.09003 * 117.49813 * 107.48903 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6045 1.9842 -1.3945 5 1 1.3969 2.6813 0.5895 6 1 3.4887 1.4736 0.8050 7 6 2.0046 -1.1941 -0.0005 8 1 1.4673 -2.1277 -0.0787 9 6 3.5076 -1.1965 0.1080 10 6 4.0667 -1.2326 1.5317 11 7 3.1263 -0.5751 2.4425 12 6 2.5785 -1.2501 3.4105 13 8 1.6133 -0.6836 4.1671 14 7 2.9815 -2.5385 3.6631 15 6 2.2840 -3.3398 4.6718 16 1 1.2182 -3.1111 4.6668 17 6 2.8699 -3.0876 6.0417 18 6 3.0468 -4.2063 6.6904 19 6 2.6089 -5.3912 5.8612 20 1 1.6351 -5.7492 6.1953 21 6 3.6457 -6.5131 5.9454 22 8 3.6835 -7.0278 7.2779 23 6 2.5153 -4.8472 4.4169 24 6 4.2927 -0.4042 -0.9394 25 6 4.2932 -1.9337 -0.9785 26 1 -0.4850 0.8401 0.0004 27 1 4.2076 -2.2685 1.8404 28 1 5.0238 -0.7118 1.5595 29 1 1.2670 -1.2620 4.8605 30 1 3.7280 -2.9180 3.1735 31 1 3.1110 -2.1101 6.4324 32 1 3.4528 -4.2760 7.6887 33 1 3.3739 -7.3115 5.2550 34 1 4.6274 -6.1212 5.6792 35 1 4.3204 -7.7443 7.4049 36 1 1.6715 -5.2884 3.8863 37 1 3.4465 -5.0141 3.8752 38 1 3.7220 0.1191 -1.7067 39 1 5.2075 0.0912 -0.6141 40 1 5.2083 -2.4445 -0.6789 41 1 3.7228 -2.4171 -1.7717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330237707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:07 Heat of formation + Delta-G solvation = -30.761178 kcal Electronic energy + Delta-G solvation = -22329.043274 eV Core-core repulsion = 19017.353638 eV Total energy + Delta-G solvation = -3311.689636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05861 -39.45018 -38.65362 -37.24805 -35.85276 -34.07173 -33.33599 -30.81528 -28.87708 -27.83124 -27.02636 -24.63462 -23.30218 -22.08789 -21.73497 -20.51778 -20.18451 -19.35943 -18.18534 -18.08971 -17.72009 -16.89553 -16.69105 -15.94436 -15.79528 -15.46809 -15.07835 -14.72414 -14.65591 -14.48637 -14.42535 -13.79958 -13.57275 -13.01569 -12.95571 -12.90232 -12.65890 -12.57351 -12.25904 -12.12824 -12.00883 -11.94810 -11.57723 -10.96662 -10.91769 -10.80849 -10.50250 -10.33269 -10.02189 -9.57982 -8.76383 -8.16494 -6.19482 1.23250 1.38785 1.49382 1.72700 1.96846 2.33660 2.59238 2.84967 3.25114 3.31167 3.32751 3.54831 3.70923 3.99176 4.25694 4.27851 4.33194 4.35764 4.37801 4.47333 4.53644 4.67438 4.75145 4.78979 4.85208 4.85937 4.94488 5.00807 5.11099 5.11727 5.23933 5.45353 5.50498 5.53099 5.62122 5.86301 5.87492 6.23540 6.36079 6.84918 6.93688 6.97707 7.55249 7.84106 8.98485 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.004482 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.742542 B = 6245.151070 C = 6700.433110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.050 3.950 3 Si 0.950 3.050 4 H -0.290 1.290 5 H -0.321 1.321 6 H -0.231 1.231 7 C -0.466 4.466 8 H 0.023 0.977 9 C -0.021 4.021 10 C 0.122 3.878 11 N -0.621 5.621 12 C 0.559 3.441 13 O -0.477 6.477 14 N -0.759 5.759 15 C 0.153 3.847 16 H 0.088 0.912 17 C -0.192 4.192 18 C -0.129 4.129 19 C -0.067 4.067 20 H 0.093 0.907 21 C 0.086 3.914 22 O -0.591 6.591 23 C -0.112 4.112 24 C -0.206 4.206 25 C -0.159 4.159 26 H 0.256 0.744 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.410 0.590 30 H 0.411 0.589 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.473 -14.384 14.796 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.148 4.148 3 Si 0.779 3.221 4 H -0.217 1.217 5 H -0.250 1.250 6 H -0.153 1.153 7 C -0.503 4.503 8 H 0.041 0.959 9 C -0.022 4.022 10 C -0.008 4.008 11 N -0.365 5.365 12 C 0.246 3.754 13 O -0.273 6.273 14 N -0.417 5.417 15 C 0.047 3.953 16 H 0.106 0.894 17 C -0.212 4.212 18 C -0.148 4.148 19 C -0.086 4.086 20 H 0.111 0.889 21 C 0.008 3.992 22 O -0.400 6.400 23 C -0.150 4.150 24 C -0.243 4.243 25 C -0.197 4.197 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.267 0.733 30 H 0.251 0.749 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.247 0.753 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.764 -12.467 14.323 21.352 hybrid contribution 0.280 -0.650 0.035 0.709 sum 10.044 -13.117 14.358 21.888 Atomic orbital electron populations 1.70045 1.08326 1.27186 1.53894 1.25428 0.94584 1.02053 0.92690 0.85758 0.80730 0.78870 0.76764 1.21702 1.25006 1.15350 1.20100 0.89323 0.91782 1.49135 0.95888 1.19547 0.92244 1.01733 0.88665 1.21198 0.93062 0.95391 0.91165 1.72066 1.22378 1.34031 1.08037 1.20384 0.86788 0.79866 0.88371 1.84919 1.50611 1.44055 1.47675 1.46045 1.38693 1.12400 1.44540 1.20936 0.96482 0.91907 0.85959 0.89418 1.23710 1.02148 0.99326 0.96000 1.23267 0.98008 0.93713 0.99781 1.21011 0.99936 0.94100 0.93533 0.88895 1.22162 0.97992 0.95207 0.83802 1.86418 1.66165 1.57394 1.29980 1.22677 1.03933 0.92109 0.96328 1.23034 1.02129 0.95032 1.04144 1.22915 1.01801 0.92938 1.02016 0.93503 0.93883 0.91858 0.73341 0.74875 0.85597 0.84936 0.92169 0.92990 0.75346 0.89266 0.89456 0.91822 0.88496 0.87117 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.41 13.96 21.45 0.30 -63.11 16 2 C 0.05 3.09 5.24 84.66 0.44 3.53 16 3 Si 0.95 51.95 23.78 68.60 1.63 53.58 16 4 H -0.29 -15.19 6.92 99.48 0.69 -14.50 16 5 H -0.32 -18.17 7.11 99.48 0.71 -17.47 16 6 H -0.23 -12.09 6.42 99.48 0.64 -11.45 16 7 C -0.47 -27.48 8.68 25.60 0.22 -27.26 16 8 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 9 C -0.02 -0.96 1.40 -52.93 -0.07 -1.04 16 10 C 0.12 5.01 6.27 86.38 0.54 5.55 16 11 N -0.62 -28.75 8.07 -465.98 -3.76 -32.51 16 12 C 0.56 21.74 8.82 179.63 1.58 23.32 16 13 O -0.48 -17.84 13.61 -83.73 -1.14 -18.98 16 14 N -0.76 -21.62 5.07 -441.89 -2.24 -23.86 16 15 C 0.15 3.24 2.82 44.93 0.13 3.36 16 16 H 0.09 1.88 6.97 -2.39 -0.02 1.87 16 17 C -0.19 -3.56 10.09 26.26 0.27 -3.30 16 18 C -0.13 -2.14 9.92 26.26 0.26 -1.88 16 19 C -0.07 -1.02 3.18 -10.86 -0.03 -1.05 16 20 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 21 C 0.09 1.07 6.38 71.98 0.46 1.53 16 22 O -0.59 -7.91 13.48 -148.98 -2.01 -9.92 16 23 C -0.11 -1.90 6.39 31.70 0.20 -1.69 16 24 C -0.21 -8.87 7.32 30.60 0.22 -8.65 16 25 C -0.16 -6.17 9.95 30.59 0.30 -5.87 16 26 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 27 H 0.04 1.50 5.41 -2.39 -0.01 1.49 16 28 H 0.06 2.41 7.88 -2.39 -0.02 2.40 16 29 H 0.41 10.46 6.40 -74.05 -0.47 9.98 16 30 H 0.41 11.13 5.81 -92.71 -0.54 10.59 16 31 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.40 1.81 9.12 -74.06 -0.68 1.14 16 36 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.09 1.38 7.57 -2.38 -0.02 1.36 16 38 H 0.06 3.00 6.54 -2.39 -0.02 2.98 16 39 H 0.10 3.66 8.03 -2.39 -0.02 3.64 16 40 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -80.75 329.96 -3.40 -84.15 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.71 Total: 24.09 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 4.53 Total: -13.44 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -5.70 Total: -119.48 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -3.15 Total: -28.90 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 1.63 Total: 53.58 kcal Total: -80.75 -3.40 -84.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330237707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.388 kcal (2) G-P(sol) polarization free energy of solvation -80.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds