Wall clock time and date at job start Tue Mar 31 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53009 * 109.46706 * 168.81427 * 3 2 1 5 5 N 1.46497 * 109.46688 * 179.97438 * 4 3 2 6 6 C 1.46503 * 119.99560 * 93.93724 * 5 4 3 7 7 C 1.50701 * 109.47174 * 84.89168 * 6 5 4 8 8 H 1.08003 * 119.99768 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99759 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00142 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99622 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46849 * 89.99923 * 11 9 7 13 13 H 1.48500 * 109.46943 * 209.99751 * 11 9 7 14 14 H 1.48498 * 109.47213 * 329.99826 * 11 9 7 15 15 C 1.34774 * 119.99997 * 273.65619 * 5 4 3 16 16 O 1.21274 * 120.00167 * 5.09597 * 15 5 4 17 17 C 1.50701 * 119.99793 * 185.08741 * 15 5 4 18 18 C 1.52999 * 109.47613 * 281.10138 * 17 15 5 19 19 C 1.52998 * 109.47431 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.46955 * 59.99855 * 19 18 17 21 21 O 1.42895 * 109.47195 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.47448 * 300.00388 * 20 19 18 23 23 C 1.52998 * 109.47111 * 59.99563 * 22 20 19 24 24 H 1.08996 * 109.47040 * 48.81954 * 3 2 1 25 25 H 1.08999 * 109.47325 * 288.81060 * 3 2 1 26 26 H 1.08999 * 109.46627 * 60.00041 * 4 3 2 27 27 H 1.08999 * 109.46929 * 299.99876 * 4 3 2 28 28 H 1.09006 * 109.46684 * 204.88511 * 6 5 4 29 29 H 1.08993 * 109.47350 * 324.88926 * 6 5 4 30 30 H 0.96999 * 119.99716 * 179.97438 * 10 9 7 31 31 H 1.09004 * 109.46830 * 41.10280 * 17 15 5 32 32 H 1.08999 * 109.46677 * 300.00512 * 18 17 15 33 33 H 1.09003 * 109.47072 * 59.99533 * 18 17 15 34 34 H 1.08992 * 109.47226 * 300.00479 * 19 18 17 35 35 H 1.08994 * 109.46944 * 180.02562 * 19 18 17 36 36 H 1.09008 * 109.46790 * 59.99886 * 20 19 18 37 37 H 0.96695 * 114.00733 * 300.00401 * 21 20 19 38 38 H 1.08995 * 109.46688 * 299.99902 * 22 20 19 39 39 H 1.08992 * 109.46929 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.47203 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.46864 * 60.00397 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1174 1.4161 -0.2799 5 7 4.5823 1.4169 -0.2792 6 6 5.3154 1.2570 -1.5376 7 6 5.4565 2.5979 -2.2106 8 1 5.0413 3.4809 -1.7475 9 6 6.1157 2.6975 -3.4175 10 7 6.6217 1.6224 -3.9811 11 14 6.2900 4.3597 -4.2521 12 1 7.5431 5.0133 -3.7964 13 1 6.3368 4.1718 -5.7244 14 1 5.1287 5.2151 -3.8989 15 6 5.2556 1.5703 0.8781 16 8 4.6524 1.6150 1.9293 17 6 6.7581 1.6862 0.8661 18 6 7.3758 0.2953 0.7081 19 6 8.9012 0.4131 0.6952 20 6 9.3757 1.0355 2.0098 21 8 10.8004 1.1450 1.9981 22 6 8.7581 2.4264 2.1679 23 6 7.2327 2.3086 2.1807 24 1 2.9717 -0.6758 -0.7734 25 1 2.9716 -0.3305 0.9728 26 1 2.7537 2.0925 0.4936 27 1 2.7539 1.7473 -1.2526 28 1 6.3046 0.8476 -1.3323 29 1 4.7696 0.5776 -2.1922 30 1 7.0851 1.6924 -4.8304 31 1 7.0671 2.3177 0.0331 32 1 7.0667 -0.3361 1.5410 33 1 7.0380 -0.1479 -0.2287 34 1 9.2098 1.0445 -0.1379 35 1 9.3411 -0.5777 0.5822 36 1 9.0670 0.4041 2.8431 37 1 11.2592 0.2993 1.9008 38 1 9.0667 3.0578 1.3347 39 1 9.0958 2.8696 3.1046 40 1 6.7927 3.2995 2.2928 41 1 6.9241 1.6772 3.0139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330958598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:20 Heat of formation + Delta-G solvation = -85.612096 kcal Electronic energy + Delta-G solvation = -22602.836281 eV Core-core repulsion = 19288.768130 eV Total energy + Delta-G solvation = -3314.068150 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95574 -38.17299 -36.66742 -35.33247 -35.13905 -32.90187 -31.40974 -30.54584 -29.31555 -27.24131 -24.44977 -23.29508 -22.49710 -22.00788 -19.78857 -18.36483 -17.46965 -17.14051 -16.66947 -16.37996 -15.76151 -15.01863 -14.67968 -14.50868 -14.40782 -14.21308 -13.71170 -13.32328 -13.00730 -12.90390 -12.40435 -12.31144 -12.21451 -12.09873 -12.08456 -11.65915 -11.42304 -11.36523 -11.15245 -11.02869 -10.91728 -10.75045 -10.63185 -10.40223 -10.17399 -10.00489 -9.86415 -9.58708 -9.04825 -8.61279 -7.91893 -6.26642 -4.33714 2.85158 2.94935 3.18595 3.23560 3.26842 3.31640 3.67866 4.24209 4.26847 4.39379 4.87556 4.89963 5.06099 5.10748 5.27921 5.33318 5.36074 5.42612 5.49314 5.64077 5.67957 5.70039 5.72283 5.97168 6.08908 6.13094 6.19401 6.25370 6.31534 6.34122 6.38249 6.49503 6.60348 6.72966 7.10759 7.39043 7.67353 7.69181 7.70942 7.95604 8.19098 8.69543 8.87806 9.34811 10.79937 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.007191 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.630469 B = 3892.663930 C = 5986.084227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.127 3.873 5 N -0.595 5.595 6 C 0.228 3.772 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.523 3.477 16 O -0.571 6.571 17 C -0.107 4.107 18 C -0.106 4.106 19 C -0.147 4.147 20 C 0.104 3.896 21 O -0.571 6.571 22 C -0.111 4.111 23 C -0.094 4.094 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.266 0.734 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.374 0.626 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -3.980 7.844 10.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.096 4.096 3 C -0.087 4.087 4 C 0.002 3.998 5 N -0.325 5.325 6 C 0.109 3.891 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.721 3.279 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.312 3.688 16 O -0.451 6.451 17 C -0.128 4.128 18 C -0.144 4.144 19 C -0.185 4.185 20 C 0.046 3.954 21 O -0.377 6.377 22 C -0.149 4.149 23 C -0.132 4.132 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.221 0.779 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.963 -3.389 8.257 9.405 hybrid contribution 0.706 0.268 -0.915 1.186 sum 3.668 -3.121 7.342 8.781 Atomic orbital electron populations 1.81173 1.13098 1.08948 1.09700 1.29150 0.95163 0.92849 0.92485 1.19791 0.81254 1.01855 1.05784 1.21098 0.81842 0.93399 1.03475 1.48233 1.05095 1.69904 1.09224 1.19689 0.92713 0.97572 0.79133 1.21480 1.36972 0.94030 1.05533 0.92027 1.24908 0.95013 0.96814 0.96842 1.69899 1.36541 1.28060 1.18189 0.86558 0.78751 0.83922 0.78662 1.20411 1.21089 1.19806 1.20548 0.89949 0.75257 0.83088 1.90596 1.70689 1.52527 1.31309 1.21331 0.91779 0.99069 1.00663 1.21494 0.94413 0.95557 1.02939 1.22220 0.96289 1.01130 0.98871 1.21883 0.79992 0.97354 0.96194 1.86505 1.18864 1.35624 1.96668 1.21488 0.94960 0.95695 1.02738 1.21292 0.93495 1.01589 0.96864 0.87150 0.87240 0.90468 0.89222 0.92963 0.94587 0.92459 0.86951 0.92056 0.89859 0.90342 0.91830 0.93008 0.77943 0.90949 0.91504 0.91206 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.56 18.54 42.15 0.78 -6.77 16 2 C 0.22 3.19 15.43 -20.76 -0.32 2.87 16 3 C -0.05 -0.58 6.01 -29.51 -0.18 -0.76 16 4 C 0.13 2.00 5.31 -4.04 -0.02 1.98 16 5 N -0.59 -10.61 2.46 -175.06 -0.43 -11.04 16 6 C 0.23 4.68 4.72 -5.19 -0.02 4.66 16 7 C -0.54 -12.83 9.03 -34.44 -0.31 -13.14 16 8 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -22.76 13.29 55.43 0.74 -22.02 16 11 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 15 C 0.52 9.35 6.83 -10.99 -0.07 9.27 16 16 O -0.57 -11.11 15.72 5.56 0.09 -11.02 16 17 C -0.11 -1.72 1.68 -91.77 -0.15 -1.87 16 18 C -0.11 -1.49 4.89 -26.73 -0.13 -1.62 16 19 C -0.15 -1.86 5.55 -26.73 -0.15 -2.01 16 20 C 0.10 1.27 3.47 -26.73 -0.09 1.18 16 21 O -0.57 -6.91 13.32 -35.23 -0.47 -7.38 16 22 C -0.11 -1.47 5.57 -26.73 -0.15 -1.62 16 23 C -0.09 -1.36 4.66 -26.73 -0.12 -1.48 16 24 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.08 1.25 7.61 -51.93 -0.40 0.85 16 27 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 28 H 0.05 1.08 4.39 -51.93 -0.23 0.85 16 29 H 0.04 0.77 8.11 -51.93 -0.42 0.35 16 30 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.11 2.04 7.11 -51.93 -0.37 1.67 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.26 5.96 -51.93 -0.31 0.95 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.37 2.90 9.08 45.56 0.41 3.31 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.00 7.91 -51.93 -0.41 0.59 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -28.37 340.40 -6.50 -34.87 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.49 Total: 4.62 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.83 Total: -0.97 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 1.09 Total: -39.84 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.38 Total: -18.40 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.37 -6.50 -34.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330958598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.740 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds