Wall clock time and date at job start Tue Mar 31 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53009 * 109.46706 * 168.81427 * 3 2 1 5 5 N 1.46497 * 109.46688 * 179.97438 * 4 3 2 6 6 C 1.46503 * 119.99560 * 93.93724 * 5 4 3 7 7 C 1.50701 * 109.47174 * 84.89168 * 6 5 4 8 8 H 1.08003 * 119.99768 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99759 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00142 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99622 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46849 * 89.99923 * 11 9 7 13 13 H 1.48500 * 109.46943 * 209.99751 * 11 9 7 14 14 H 1.48498 * 109.47213 * 329.99826 * 11 9 7 15 15 C 1.34774 * 119.99997 * 273.65619 * 5 4 3 16 16 O 1.21274 * 120.00167 * 5.09597 * 15 5 4 17 17 C 1.50701 * 119.99793 * 185.08741 * 15 5 4 18 18 C 1.52999 * 109.47613 * 281.10138 * 17 15 5 19 19 C 1.52998 * 109.47431 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.46955 * 59.99855 * 19 18 17 21 21 O 1.42895 * 109.47195 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.47448 * 300.00388 * 20 19 18 23 23 C 1.52998 * 109.47111 * 59.99563 * 22 20 19 24 24 H 1.08996 * 109.47040 * 48.81954 * 3 2 1 25 25 H 1.08999 * 109.47325 * 288.81060 * 3 2 1 26 26 H 1.08999 * 109.46627 * 60.00041 * 4 3 2 27 27 H 1.08999 * 109.46929 * 299.99876 * 4 3 2 28 28 H 1.09006 * 109.46684 * 204.88511 * 6 5 4 29 29 H 1.08993 * 109.47350 * 324.88926 * 6 5 4 30 30 H 0.96999 * 119.99716 * 179.97438 * 10 9 7 31 31 H 1.09004 * 109.46830 * 41.10280 * 17 15 5 32 32 H 1.08999 * 109.46677 * 300.00512 * 18 17 15 33 33 H 1.09003 * 109.47072 * 59.99533 * 18 17 15 34 34 H 1.08992 * 109.47226 * 300.00479 * 19 18 17 35 35 H 1.08994 * 109.46944 * 180.02562 * 19 18 17 36 36 H 1.09008 * 109.46790 * 59.99886 * 20 19 18 37 37 H 0.96695 * 114.00733 * 300.00401 * 21 20 19 38 38 H 1.08995 * 109.46688 * 299.99902 * 22 20 19 39 39 H 1.08992 * 109.46929 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.47203 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.46864 * 60.00397 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1174 1.4161 -0.2799 5 7 4.5823 1.4169 -0.2792 6 6 5.3154 1.2570 -1.5376 7 6 5.4565 2.5979 -2.2106 8 1 5.0413 3.4809 -1.7475 9 6 6.1157 2.6975 -3.4175 10 7 6.6217 1.6224 -3.9811 11 14 6.2900 4.3597 -4.2521 12 1 7.5431 5.0133 -3.7964 13 1 6.3368 4.1718 -5.7244 14 1 5.1287 5.2151 -3.8989 15 6 5.2556 1.5703 0.8781 16 8 4.6524 1.6150 1.9293 17 6 6.7581 1.6862 0.8661 18 6 7.3758 0.2953 0.7081 19 6 8.9012 0.4131 0.6952 20 6 9.3757 1.0355 2.0098 21 8 10.8004 1.1450 1.9981 22 6 8.7581 2.4264 2.1679 23 6 7.2327 2.3086 2.1807 24 1 2.9717 -0.6758 -0.7734 25 1 2.9716 -0.3305 0.9728 26 1 2.7537 2.0925 0.4936 27 1 2.7539 1.7473 -1.2526 28 1 6.3046 0.8476 -1.3323 29 1 4.7696 0.5776 -2.1922 30 1 7.0851 1.6924 -4.8304 31 1 7.0671 2.3177 0.0331 32 1 7.0667 -0.3361 1.5410 33 1 7.0380 -0.1479 -0.2287 34 1 9.2098 1.0445 -0.1379 35 1 9.3411 -0.5777 0.5822 36 1 9.0670 0.4041 2.8431 37 1 11.2592 0.2993 1.9008 38 1 9.0667 3.0578 1.3347 39 1 9.0958 2.8696 3.1046 40 1 6.7927 3.2995 2.2928 41 1 6.9241 1.6772 3.0139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330958598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:20 Heat of formation + Delta-G solvation = -102.807183 kcal Electronic energy + Delta-G solvation = -22603.581915 eV Core-core repulsion = 19288.768130 eV Total energy + Delta-G solvation = -3314.813785 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30257 -39.29562 -37.91315 -36.75260 -36.29359 -34.65159 -32.74044 -31.65821 -30.47219 -28.96134 -25.70050 -24.98163 -23.60664 -23.22226 -20.90871 -19.76229 -18.79559 -18.34494 -18.07416 -17.83389 -17.13555 -16.39244 -16.13879 -15.83783 -15.61076 -15.36443 -14.92221 -14.59388 -14.32051 -14.29369 -13.91469 -13.58420 -13.57224 -13.29281 -13.22637 -13.05174 -12.88162 -12.74702 -12.54001 -12.51534 -12.22876 -12.10628 -11.92981 -11.81052 -11.59807 -11.53022 -11.04260 -10.65058 -10.60667 -10.34114 -9.46259 -8.15294 -6.26327 1.42444 1.47027 1.53146 1.62562 1.77595 1.83922 2.30784 2.46634 3.14890 3.17968 3.34968 3.78101 3.79505 3.86734 4.13541 4.16621 4.24286 4.34850 4.39895 4.53435 4.55178 4.57796 4.59933 4.84987 4.88091 4.98006 5.04837 5.06987 5.11774 5.17409 5.21523 5.29159 5.33124 5.46562 5.55903 5.74406 5.88904 6.14184 6.53942 6.62792 6.88328 6.99313 7.36457 7.47834 8.89479 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.007191 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.630469 B = 3892.663930 C = 5986.084227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.245 3.755 3 C -0.030 4.030 4 C 0.123 3.877 5 N -0.595 5.595 6 C 0.242 3.758 7 C -0.545 4.545 8 H 0.050 0.950 9 C 0.029 3.971 10 N -0.913 5.913 11 Si 0.941 3.059 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.521 3.479 16 O -0.585 6.585 17 C -0.106 4.106 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.109 3.891 21 O -0.585 6.585 22 C -0.110 4.110 23 C -0.087 4.087 24 H 0.131 0.869 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.266 0.734 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.394 0.606 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.775 -4.729 8.646 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.073 4.073 3 C -0.071 4.071 4 C -0.002 4.002 5 N -0.324 5.324 6 C 0.121 3.879 7 C -0.584 4.584 8 H 0.068 0.932 9 C -0.172 4.172 10 N -0.552 5.552 11 Si 0.768 3.232 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.200 1.200 15 C 0.311 3.689 16 O -0.467 6.467 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.179 4.179 20 C 0.051 3.949 21 O -0.394 6.394 22 C -0.148 4.148 23 C -0.125 4.125 24 H 0.148 0.852 25 H 0.139 0.861 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.243 0.757 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.713 -4.145 9.063 10.635 hybrid contribution 0.481 0.530 -1.143 1.349 sum 4.194 -3.614 7.920 9.663 Atomic orbital electron populations 1.81201 1.14299 1.10166 1.11174 1.29269 0.95140 0.91649 0.91193 1.19706 0.80022 1.00261 1.07067 1.21161 0.80693 0.95180 1.03118 1.48152 1.05882 1.69964 1.08422 1.19389 0.92950 0.95777 0.79741 1.21717 1.36151 0.94999 1.05543 0.93191 1.25448 0.95163 0.99040 0.97555 1.69960 1.37453 1.29235 1.18536 0.85816 0.78445 0.81157 0.77821 1.20317 1.20984 1.19966 1.20852 0.90678 0.74658 0.82707 1.90586 1.71174 1.53283 1.31611 1.21321 0.90661 1.00112 1.00582 1.21446 0.95293 0.94203 1.02880 1.22175 0.95249 1.02085 0.98440 1.21792 0.80223 0.96570 0.96316 1.86462 1.18704 1.37546 1.96659 1.21455 0.94065 0.96600 1.02655 1.21216 0.94359 1.00928 0.95970 0.85150 0.86124 0.91017 0.89685 0.92906 0.95216 0.92499 0.89561 0.90424 0.91088 0.92718 0.89386 0.91159 0.75670 0.92515 0.90413 0.92232 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.00 18.54 20.01 0.37 -15.63 16 2 C 0.24 6.73 15.43 89.44 1.38 8.11 16 3 C -0.03 -0.70 6.01 28.79 0.17 -0.53 16 4 C 0.12 3.77 5.31 86.38 0.46 4.23 16 5 N -0.59 -20.88 2.46 -826.15 -2.03 -22.91 16 6 C 0.24 9.87 4.72 85.63 0.40 10.27 16 7 C -0.55 -25.90 9.03 25.60 0.23 -25.67 16 8 H 0.05 2.45 7.81 -2.91 -0.02 2.43 16 9 C 0.03 1.42 5.46 84.66 0.46 1.88 16 10 N -0.91 -46.65 13.29 21.45 0.28 -46.36 16 11 Si 0.94 40.15 29.54 68.60 2.03 42.18 16 12 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.52 18.26 6.83 87.66 0.60 18.86 16 16 O -0.58 -22.10 15.72 -3.01 -0.05 -22.15 16 17 C -0.11 -3.33 1.68 -11.54 -0.02 -3.34 16 18 C -0.10 -2.67 4.89 30.59 0.15 -2.52 16 19 C -0.14 -3.33 5.55 30.59 0.17 -3.16 16 20 C 0.11 2.42 3.47 30.60 0.11 2.52 16 21 O -0.59 -12.76 13.32 -148.98 -1.98 -14.75 16 22 C -0.11 -2.77 5.57 30.60 0.17 -2.60 16 23 C -0.09 -2.41 4.66 30.59 0.14 -2.27 16 24 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.07 2.27 7.61 -2.39 -0.02 2.26 16 27 H 0.08 2.67 8.04 -2.39 -0.02 2.65 16 28 H 0.05 2.18 4.39 -2.38 -0.01 2.17 16 29 H 0.03 1.26 8.11 -2.39 -0.02 1.24 16 30 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 31 H 0.09 3.19 7.11 -2.38 -0.02 3.17 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.07 5.96 -2.39 -0.01 2.05 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.39 4.97 9.08 -74.06 -0.67 4.30 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 2.03 7.91 -2.38 -0.02 2.01 16 Total: -1.00 -59.26 340.40 3.41 -55.86 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.36 Total: 18.00 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.43 Total: 5.77 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.38 Total: -84.90 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -2.03 Total: -36.90 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -59.26 3.41 -55.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330958598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.949 kcal (2) G-P(sol) polarization free energy of solvation -59.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds