Wall clock time and date at job start Tue Mar 31 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48501 * 109.47068 * 94.66517 * 3 2 1 5 5 H 1.48502 * 109.46700 * 214.65997 * 3 2 1 6 6 H 1.48500 * 109.47330 * 334.66060 * 3 2 1 7 7 C 1.40047 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99921 * 8.74211 * 7 2 1 9 9 C 1.46379 * 119.99657 * 188.75283 * 7 2 1 10 10 O 1.21690 * 120.00064 * 14.55131 * 9 7 2 11 11 N 1.34777 * 119.99727 * 194.55855 * 9 7 2 12 12 C 1.46960 * 120.59262 * 354.79607 * 11 9 7 13 13 C 1.53815 * 108.40011 * 124.75907 * 12 11 9 14 14 N 1.46962 * 108.57518 * 49.63444 * 13 12 11 15 15 C 1.34779 * 120.59506 * 124.62809 * 14 13 12 16 16 O 1.21279 * 120.00510 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99792 * 0.02562 * 15 14 13 18 18 C 1.53002 * 109.47401 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47248 * 179.97438 * 18 17 15 20 20 C 1.52998 * 117.49956 * 243.62185 * 19 18 17 21 21 C 1.52998 * 117.50087 * 174.99690 * 19 18 17 22 22 C 1.46966 * 118.81620 * 304.64948 * 14 13 12 23 23 C 1.46962 * 120.59158 * 175.07792 * 11 9 7 24 24 H 0.97005 * 120.00410 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.61057 * 244.54074 * 12 11 9 26 26 H 1.09003 * 109.61474 * 5.05728 * 12 11 9 27 27 H 1.09007 * 109.74152 * 289.85056 * 13 12 11 28 28 H 1.08998 * 109.67927 * 169.38437 * 13 12 11 29 29 H 1.09004 * 109.47384 * 299.99978 * 17 15 14 30 30 H 1.08994 * 109.47425 * 59.99798 * 17 15 14 31 31 H 1.09000 * 109.46629 * 299.99688 * 18 17 15 32 32 H 1.08994 * 109.47189 * 59.99416 * 18 17 15 33 33 H 1.09001 * 115.55384 * 29.32778 * 19 18 17 34 34 H 1.09001 * 117.49921 * 359.97438 * 20 19 18 35 35 H 1.08998 * 117.50438 * 145.02241 * 20 19 18 36 36 H 1.08998 * 117.50194 * 214.97983 * 21 19 18 37 37 H 1.09000 * 117.49620 * 359.97438 * 21 19 18 38 38 H 1.09000 * 109.61092 * 295.48152 * 22 14 13 39 39 H 1.09001 * 109.60969 * 174.97043 * 22 14 13 40 40 H 1.08998 * 109.61403 * 354.94412 * 23 11 9 41 41 H 1.08999 * 109.61021 * 115.46148 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5867 1.9895 1.3954 5 1 3.4855 1.4706 -0.7963 6 1 1.3923 2.6791 -0.5992 7 6 2.0069 -1.2129 0.0005 8 1 1.4763 -2.1428 -0.1412 9 6 3.4579 -1.2201 0.1935 10 8 4.0210 -0.2261 0.6125 11 7 4.1702 -2.3278 -0.0932 12 6 3.4935 -3.5701 -0.4911 13 6 4.0668 -4.0234 -1.8445 14 7 5.5339 -4.0121 -1.7588 15 6 6.2463 -5.1200 -2.0445 16 8 7.4566 -5.0989 -1.9698 17 6 5.5388 -6.3852 -2.4568 18 6 6.5706 -7.4836 -2.7211 19 6 5.8523 -8.7682 -3.1391 20 6 5.9861 -9.9836 -2.2194 21 6 6.7185 -9.9561 -3.5625 22 6 6.2104 -2.7713 -1.3554 23 6 5.6373 -2.3165 -0.0075 24 1 -0.4851 0.8401 -0.0004 25 1 3.6702 -4.3398 0.2603 26 1 2.4230 -3.3888 -0.5879 27 1 3.7410 -3.3409 -2.6295 28 1 3.7213 -5.0322 -2.0702 29 1 4.8672 -6.7024 -1.6591 30 1 4.9636 -6.2007 -3.3641 31 1 7.2425 -7.1666 -3.5187 32 1 7.1455 -7.6680 -1.8136 33 1 4.9022 -8.6290 -3.6548 34 1 6.5862 -9.8682 -1.3168 35 1 5.1238 -10.6443 -2.1298 36 1 6.3380 -10.5988 -4.3565 37 1 7.8001 -9.8224 -3.5437 38 1 6.0373 -1.9997 -2.1056 39 1 7.2803 -2.9540 -1.2551 40 1 5.9831 -1.3071 0.2152 41 1 5.9632 -2.9990 0.7775 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332164009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:45 Heat of formation + Delta-G solvation = -75.725481 kcal Electronic energy + Delta-G solvation = -22047.450368 eV Core-core repulsion = 18733.810934 eV Total energy + Delta-G solvation = -3313.639434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36579 -40.03445 -38.41981 -37.69558 -35.02652 -34.78588 -33.48774 -32.16981 -29.34403 -28.16855 -26.02613 -24.55727 -23.44678 -23.15756 -21.56039 -21.15798 -19.86714 -18.72661 -18.22774 -17.47091 -17.09330 -16.90456 -16.59079 -16.16268 -16.10519 -15.69098 -15.21169 -15.12067 -14.61407 -14.38507 -14.22081 -14.05940 -13.80428 -13.48632 -13.07006 -12.98543 -12.68189 -12.44081 -12.41152 -12.37552 -12.29004 -12.20377 -12.06457 -11.51020 -11.21829 -11.15995 -10.79696 -10.70545 -10.11489 -10.01653 -9.16457 -8.79290 -6.99966 1.31578 1.37373 1.59702 1.61532 1.89027 2.07881 2.33808 2.66583 2.96102 3.30185 3.46718 3.82817 3.89495 3.92307 4.08348 4.10282 4.18938 4.28252 4.31671 4.41070 4.45588 4.51464 4.63525 4.67307 4.71541 4.83449 4.84876 4.86328 5.04738 5.08453 5.10795 5.11007 5.17753 5.32214 5.42099 5.49531 5.67026 5.94062 6.20003 6.40330 6.62016 7.11330 7.13915 7.95284 8.25364 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.033505 B = 0.003586 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.504046 B = 7806.882601 C = 8355.906356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.074 3.926 3 Si 1.004 2.996 4 H -0.296 1.296 5 H -0.287 1.287 6 H -0.300 1.300 7 C -0.546 4.546 8 H 0.095 0.905 9 C 0.549 3.451 10 O -0.648 6.648 11 N -0.633 5.633 12 C 0.100 3.900 13 C 0.098 3.902 14 N -0.610 5.610 15 C 0.510 3.490 16 O -0.589 6.589 17 C -0.129 4.129 18 C -0.069 4.069 19 C -0.153 4.153 20 C -0.183 4.183 21 C -0.186 4.186 22 C 0.107 3.893 23 C 0.109 3.891 24 H 0.292 0.708 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.136 0.864 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 -18.081 -7.980 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.142 4.142 3 Si 0.837 3.163 4 H -0.223 1.223 5 H -0.214 1.214 6 H -0.229 1.229 7 C -0.582 4.582 8 H 0.113 0.887 9 C 0.357 3.643 10 O -0.542 6.542 11 N -0.366 5.366 12 C -0.024 4.024 13 C -0.025 4.025 14 N -0.343 5.343 15 C 0.301 3.699 16 O -0.469 6.469 17 C -0.168 4.168 18 C -0.107 4.107 19 C -0.171 4.171 20 C -0.220 4.220 21 C -0.223 4.223 22 C -0.017 4.017 23 C -0.015 4.015 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.477 -17.562 -7.741 20.597 hybrid contribution 0.325 1.093 0.357 1.195 sum 7.803 -16.469 -7.384 19.663 Atomic orbital electron populations 1.69542 1.08096 1.31036 1.38868 1.26140 0.95203 1.03429 0.89436 0.84717 0.76516 0.76876 0.78187 1.22319 1.21372 1.22923 1.20970 0.89775 0.95907 1.51574 0.88675 1.18370 0.88369 0.81067 0.76472 1.90190 1.73227 1.35562 1.55219 1.47637 1.05382 1.12014 1.71588 1.22233 0.99056 0.85259 0.95821 1.22426 0.77799 1.04879 0.97357 1.48223 1.08046 1.10924 1.67091 1.21489 0.87291 0.85511 0.75579 1.90653 1.16060 1.85127 1.55091 1.21747 0.99617 0.90290 1.05180 1.20830 0.96494 0.92333 1.01022 1.22343 1.01422 0.89026 1.04352 1.23110 1.03378 1.01282 0.94184 1.23033 0.98704 1.01716 0.98848 1.21811 0.98159 0.86148 0.95555 1.21659 0.81284 1.01868 0.96723 0.89799 0.91041 0.87967 0.90891 0.84668 0.86437 0.86171 0.92360 0.92822 0.86015 0.89363 0.87726 0.87730 0.89426 0.91842 0.88539 0.90569 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.79 13.92 21.84 0.30 -45.49 16 2 C 0.07 4.07 5.52 85.30 0.47 4.54 16 3 Si 1.00 51.41 25.88 68.60 1.78 53.19 16 4 H -0.30 -15.87 7.11 99.48 0.71 -15.17 16 5 H -0.29 -15.62 6.64 99.48 0.66 -14.96 16 6 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.55 -29.08 9.35 24.83 0.23 -28.85 16 8 H 0.10 4.88 5.98 -2.91 -0.02 4.87 16 9 C 0.55 28.10 7.29 86.36 0.63 28.73 16 10 O -0.65 -37.07 11.83 -4.32 -0.05 -37.12 16 11 N -0.63 -25.46 2.94 -822.24 -2.42 -27.88 16 12 C 0.10 3.00 6.54 86.57 0.57 3.57 16 13 C 0.10 2.24 6.52 86.57 0.56 2.80 16 14 N -0.61 -16.08 2.95 -817.14 -2.41 -18.48 16 15 C 0.51 12.99 7.70 87.66 0.67 13.66 16 16 O -0.59 -19.56 15.39 -3.03 -0.05 -19.61 16 17 C -0.13 -2.05 4.00 29.85 0.12 -1.93 16 18 C -0.07 -1.20 4.79 30.59 0.15 -1.06 16 19 C -0.15 -2.03 5.74 -10.80 -0.06 -2.09 16 20 C -0.18 -2.35 10.18 30.59 0.31 -2.04 16 21 C -0.19 -2.42 10.25 30.59 0.31 -2.11 16 22 C 0.11 3.30 6.59 86.42 0.57 3.87 16 23 C 0.11 3.88 6.58 86.42 0.57 4.45 16 24 H 0.29 14.52 8.29 -92.70 -0.77 13.75 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.10 3.34 5.33 -2.39 -0.01 3.32 16 27 H 0.07 1.78 8.14 -2.38 -0.02 1.77 16 28 H 0.14 1.84 5.91 -2.39 -0.01 1.83 16 29 H 0.12 1.43 7.72 -2.39 -0.02 1.41 16 30 H 0.12 1.35 7.91 -2.39 -0.02 1.33 16 31 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 32 H 0.05 1.11 7.83 -2.39 -0.02 1.09 16 33 H 0.12 1.24 8.07 -2.39 -0.02 1.22 16 34 H 0.09 1.23 8.03 -2.39 -0.02 1.21 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.10 2.95 6.99 -2.39 -0.02 2.93 16 40 H 0.08 3.04 7.02 -2.39 -0.02 3.03 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -70.28 328.97 3.24 -67.04 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.98 Total: 4.80 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 5.10 Total: 23.55 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -4.52 Total: -91.85 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -0.10 Total: -56.73 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 1.78 Total: 53.19 kcal Total: -70.28 3.24 -67.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332164009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.686 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds