Wall clock time and date at job start Tue Mar 31 2020 02:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99991 * 2 1 4 4 H 1.48498 * 109.47073 * 239.99904 * 3 2 1 5 5 H 1.48500 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46976 * 119.99922 * 3 2 1 7 7 C 1.37877 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00054 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00196 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00062 * 179.97438 * 11 10 9 14 14 H 1.08997 * 110.88485 * 297.64713 * 13 11 10 15 15 C 1.54632 * 110.96894 * 61.45501 * 13 11 10 16 16 C 1.51280 * 104.19278 * 93.31788 * 15 13 11 17 17 O 1.21283 * 124.94104 * 196.22559 * 16 15 13 18 18 N 1.34416 * 110.11847 * 16.25757 * 16 15 13 19 19 C 1.46503 * 124.35303 * 180.40752 * 18 16 15 20 20 C 1.54259 * 110.07270 * 125.26644 * 19 18 16 21 21 C 1.54891 * 104.19827 * 95.70098 * 20 19 18 22 22 C 1.54897 * 102.74874 * 37.93801 * 21 20 19 23 23 C 1.53873 * 110.02944 * 242.45981 * 19 18 16 24 24 C 1.46762 * 111.29971 * 0.66686 * 18 16 15 25 25 H 0.97001 * 120.00504 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47110 * 60.00284 * 9 7 2 27 27 H 1.09007 * 109.47010 * 299.99951 * 9 7 2 28 28 H 0.96997 * 119.99936 * 359.97438 * 10 9 7 29 29 H 1.09002 * 110.48259 * 334.64533 * 15 13 11 30 30 H 1.09000 * 110.59641 * 212.05514 * 15 13 11 31 31 H 1.09005 * 110.01308 * 3.85109 * 19 18 16 32 32 H 1.09004 * 110.48664 * 214.37491 * 20 19 18 33 33 H 1.08998 * 110.49426 * 337.01965 * 20 19 18 34 34 H 1.09003 * 110.75385 * 279.62587 * 21 20 19 35 35 H 1.08997 * 110.91715 * 156.32896 * 21 20 19 36 36 H 1.08995 * 110.48700 * 203.38125 * 22 21 20 37 37 H 1.08999 * 110.48290 * 80.73750 * 22 21 20 38 38 H 1.08992 * 110.03750 * 359.95039 * 23 19 18 39 39 H 1.09006 * 110.02951 * 121.38304 * 23 19 18 40 40 H 1.08999 * 110.24754 * 101.72239 * 24 18 16 41 41 H 1.09008 * 110.24701 * 223.71957 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7537 -4.8834 -0.0019 12 8 0.5614 -5.1050 -0.0029 13 6 2.7330 -6.0288 -0.0022 14 1 3.3447 -6.0168 -0.9043 15 6 3.6170 -6.0014 1.2662 16 6 2.8920 -6.9005 2.2432 17 8 3.0947 -6.9340 3.4385 18 7 1.9908 -7.6574 1.5937 19 6 1.1103 -8.6329 2.2413 20 6 -0.3613 -8.3345 1.8876 21 6 -0.6603 -9.2673 0.6878 22 6 0.1121 -10.5581 1.0575 23 6 1.4114 -10.0466 1.7134 24 6 2.0066 -7.3855 0.1516 25 1 -0.4851 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5574 0.8881 28 1 3.1566 -3.4354 -0.0010 29 1 3.6871 -4.9876 1.6605 30 1 4.6102 -6.3952 1.0500 31 1 1.2486 -8.6005 3.3220 32 1 -1.0119 -8.5744 2.7286 33 1 -0.4800 -7.2905 1.5979 34 1 -0.2770 -8.8398 -0.2388 35 1 -1.7288 -9.4665 0.6066 36 1 0.3390 -11.1366 0.1620 37 1 -0.4621 -11.1569 1.7644 38 1 2.2119 -10.0068 0.9749 39 1 1.6957 -10.7003 2.5381 40 1 2.5512 -8.1697 -0.3743 41 1 0.9880 -7.3120 -0.2297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332385140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:50 Heat of formation + Delta-G solvation = -87.541250 kcal Electronic energy + Delta-G solvation = -22469.103268 eV Core-core repulsion = 19154.951463 eV Total energy + Delta-G solvation = -3314.151805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89723 -38.69812 -37.76848 -35.70588 -34.27001 -32.55996 -31.84192 -28.84985 -28.02748 -27.60846 -26.99221 -23.77206 -21.98429 -21.14818 -20.65772 -19.64253 -18.87896 -17.71717 -16.85038 -16.20183 -15.80303 -15.33855 -15.27292 -14.88342 -14.64112 -14.43872 -14.20129 -13.75899 -13.30123 -13.08856 -12.74489 -12.61351 -12.02613 -11.91883 -11.77928 -11.62971 -11.50307 -11.40302 -11.28175 -11.11995 -11.01520 -10.88720 -10.85720 -10.69812 -10.34008 -9.70300 -9.45049 -9.14903 -8.76843 -8.62924 -7.96218 -6.19157 -4.26552 2.65260 3.01562 3.18605 3.24257 3.29253 3.30458 3.88578 4.30016 4.32593 4.36680 4.49928 4.56964 4.76856 4.87510 5.13941 5.17286 5.26849 5.31864 5.34782 5.40172 5.45211 5.47930 5.53909 5.65911 5.72949 5.73764 5.80202 5.81297 5.92786 6.09612 6.22343 6.23622 6.65315 7.18731 7.24645 7.34227 7.46711 7.61301 7.93282 8.24586 8.53641 8.72038 8.99477 9.40076 10.90950 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.003865 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.354219 B = 7242.431235 C = 7679.261954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.708 5.708 11 C 0.505 3.495 12 O -0.548 6.548 13 C -0.128 4.128 14 H 0.120 0.880 15 C -0.147 4.147 16 C 0.519 3.481 17 O -0.537 6.537 18 N -0.604 5.604 19 C 0.150 3.850 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.134 4.134 24 C 0.115 3.885 25 H 0.267 0.733 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.391 0.609 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 -19.157 -0.923 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.355 5.355 11 C 0.289 3.711 12 O -0.427 6.427 13 C -0.150 4.150 14 H 0.138 0.862 15 C -0.188 4.188 16 C 0.307 3.693 17 O -0.414 6.414 18 N -0.338 5.338 19 C 0.047 3.953 20 C -0.177 4.177 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.173 4.173 24 C -0.008 4.008 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.224 0.776 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.889 -19.213 -0.252 19.605 hybrid contribution 0.903 1.093 -0.098 1.421 sum 4.792 -18.120 -0.350 18.746 Atomic orbital electron populations 1.69958 1.06129 1.27480 1.48687 1.24943 0.94909 0.99463 0.94605 0.86471 0.79431 0.82276 0.78726 1.20035 1.21060 1.20018 1.21177 0.93246 0.90429 1.53523 0.91898 1.19122 0.88243 0.81867 0.97775 1.46438 1.11249 1.06009 1.71828 1.20035 0.89069 0.84266 0.77769 1.90655 1.16537 1.84614 1.50867 1.22393 0.97491 0.94889 1.00178 0.86167 1.22386 0.99622 1.02484 0.94280 1.20831 0.79758 0.80500 0.88185 1.90703 1.67370 1.68812 1.14540 1.48293 1.37622 1.39634 1.08245 1.21601 0.89283 0.86765 0.97650 1.22770 0.94714 1.01716 0.98547 1.22552 1.00130 0.95119 0.98452 1.22365 0.95940 0.97585 1.00182 1.22555 0.98451 0.95563 1.00718 1.22022 1.03286 0.94218 0.81313 0.92353 0.95424 0.95531 0.77595 0.87292 0.87027 0.88683 0.90756 0.89569 0.91147 0.91435 0.91653 0.91584 0.91095 0.91235 0.90826 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.25 6.47 5.43 -5.20 -0.03 6.44 16 10 N -0.71 -14.08 5.27 -61.47 -0.32 -14.40 16 11 C 0.50 9.27 7.16 -10.99 -0.08 9.19 16 12 O -0.55 -12.16 15.54 5.56 0.09 -12.07 16 13 C -0.13 -1.58 3.54 -90.04 -0.32 -1.90 16 14 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 15 C -0.15 -1.80 6.38 -26.74 -0.17 -1.97 16 16 C 0.52 8.05 8.02 -10.86 -0.09 7.96 16 17 O -0.54 -10.25 17.37 5.56 0.10 -10.16 16 18 N -0.60 -8.08 2.67 -163.46 -0.44 -8.51 16 19 C 0.15 1.81 3.55 -66.82 -0.24 1.58 16 20 C -0.14 -1.66 5.94 -25.07 -0.15 -1.81 16 21 C -0.13 -1.23 6.62 -24.73 -0.16 -1.39 16 22 C -0.12 -1.01 6.83 -25.06 -0.17 -1.18 16 23 C -0.13 -1.25 6.42 -25.61 -0.16 -1.41 16 24 C 0.11 1.34 5.72 -3.03 -0.02 1.33 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.39 6.60 8.14 -40.82 -0.33 6.27 16 29 H 0.11 1.46 7.51 -51.93 -0.39 1.07 16 30 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.27 7.58 -51.93 -0.39 0.88 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.31 7.91 -51.93 -0.41 0.90 16 34 H 0.07 0.72 6.60 -51.93 -0.34 0.38 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.65 7.39 -51.93 -0.38 0.26 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 41 H 0.10 1.34 4.94 -51.92 -0.26 1.09 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -33.42 332.47 -8.11 -41.53 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.26 Total: 4.45 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.00 Total: 3.64 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.02 Total: -48.04 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.18 Total: -22.23 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.42 -8.11 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332385140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.015 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds