Wall clock time and date at job start Tue Mar 31 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99991 * 2 1 4 4 H 1.48498 * 109.47073 * 239.99904 * 3 2 1 5 5 H 1.48500 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46976 * 119.99922 * 3 2 1 7 7 C 1.37877 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00054 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00196 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00062 * 179.97438 * 11 10 9 14 14 H 1.08997 * 110.88485 * 297.64713 * 13 11 10 15 15 C 1.54632 * 110.96894 * 61.45501 * 13 11 10 16 16 C 1.51280 * 104.19278 * 93.31788 * 15 13 11 17 17 O 1.21283 * 124.94104 * 196.22559 * 16 15 13 18 18 N 1.34416 * 110.11847 * 16.25757 * 16 15 13 19 19 C 1.46503 * 124.35303 * 180.40752 * 18 16 15 20 20 C 1.54259 * 110.07270 * 125.26644 * 19 18 16 21 21 C 1.54891 * 104.19827 * 95.70098 * 20 19 18 22 22 C 1.54897 * 102.74874 * 37.93801 * 21 20 19 23 23 C 1.53873 * 110.02944 * 242.45981 * 19 18 16 24 24 C 1.46762 * 111.29971 * 0.66686 * 18 16 15 25 25 H 0.97001 * 120.00504 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47110 * 60.00284 * 9 7 2 27 27 H 1.09007 * 109.47010 * 299.99951 * 9 7 2 28 28 H 0.96997 * 119.99936 * 359.97438 * 10 9 7 29 29 H 1.09002 * 110.48259 * 334.64533 * 15 13 11 30 30 H 1.09000 * 110.59641 * 212.05514 * 15 13 11 31 31 H 1.09005 * 110.01308 * 3.85109 * 19 18 16 32 32 H 1.09004 * 110.48664 * 214.37491 * 20 19 18 33 33 H 1.08998 * 110.49426 * 337.01965 * 20 19 18 34 34 H 1.09003 * 110.75385 * 279.62587 * 21 20 19 35 35 H 1.08997 * 110.91715 * 156.32896 * 21 20 19 36 36 H 1.08995 * 110.48700 * 203.38125 * 22 21 20 37 37 H 1.08999 * 110.48290 * 80.73750 * 22 21 20 38 38 H 1.08992 * 110.03750 * 359.95039 * 23 19 18 39 39 H 1.09006 * 110.02951 * 121.38304 * 23 19 18 40 40 H 1.08999 * 110.24754 * 101.72239 * 24 18 16 41 41 H 1.09008 * 110.24701 * 223.71957 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7537 -4.8834 -0.0019 12 8 0.5614 -5.1050 -0.0029 13 6 2.7330 -6.0288 -0.0022 14 1 3.3447 -6.0168 -0.9043 15 6 3.6170 -6.0014 1.2662 16 6 2.8920 -6.9005 2.2432 17 8 3.0947 -6.9340 3.4385 18 7 1.9908 -7.6574 1.5937 19 6 1.1103 -8.6329 2.2413 20 6 -0.3613 -8.3345 1.8876 21 6 -0.6603 -9.2673 0.6878 22 6 0.1121 -10.5581 1.0575 23 6 1.4114 -10.0466 1.7134 24 6 2.0066 -7.3855 0.1516 25 1 -0.4851 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5574 0.8881 28 1 3.1566 -3.4354 -0.0010 29 1 3.6871 -4.9876 1.6605 30 1 4.6102 -6.3952 1.0500 31 1 1.2486 -8.6005 3.3220 32 1 -1.0119 -8.5744 2.7286 33 1 -0.4800 -7.2905 1.5979 34 1 -0.2770 -8.8398 -0.2388 35 1 -1.7288 -9.4665 0.6066 36 1 0.3390 -11.1366 0.1620 37 1 -0.4621 -11.1569 1.7644 38 1 2.2119 -10.0068 0.9749 39 1 1.6957 -10.7003 2.5381 40 1 2.5512 -8.1697 -0.3743 41 1 0.9880 -7.3120 -0.2297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332385140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:49 Heat of formation + Delta-G solvation = -111.174146 kcal Electronic energy + Delta-G solvation = -22470.128067 eV Core-core repulsion = 19154.951463 eV Total energy + Delta-G solvation = -3315.176604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.04443 -40.16389 -38.78820 -36.91781 -36.13038 -34.41500 -33.01825 -29.68616 -29.59040 -28.63956 -28.36977 -25.39031 -23.59213 -22.15238 -21.47847 -21.12941 -19.95559 -19.22153 -18.03504 -17.82749 -17.02696 -16.78415 -16.69275 -16.13209 -15.96251 -15.77110 -15.57984 -14.82110 -14.52824 -14.40511 -14.12518 -14.00549 -13.72259 -13.30250 -12.99319 -12.93478 -12.69412 -12.61512 -12.47574 -12.44188 -12.23331 -12.02326 -11.97787 -11.79286 -11.51626 -11.42211 -10.90977 -10.79531 -10.71843 -9.83795 -9.68286 -8.29632 -6.46215 1.43057 1.46977 1.48591 1.54962 1.71043 2.01329 2.30523 2.53400 3.05550 3.28332 3.33078 3.65422 3.66400 3.78873 3.94049 4.00429 4.38752 4.42207 4.47970 4.51443 4.53210 4.61516 4.70199 4.78718 4.80810 4.87221 4.90871 5.05708 5.09411 5.11579 5.23331 5.26976 5.30972 5.45635 5.47986 5.64026 5.68024 5.84436 6.11973 6.64899 6.88377 7.09817 7.23225 7.47464 8.82282 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.003865 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.354219 B = 7242.431235 C = 7679.261954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.268 3.732 10 N -0.704 5.704 11 C 0.498 3.502 12 O -0.593 6.593 13 C -0.110 4.110 14 H 0.173 0.827 15 C -0.137 4.137 16 C 0.501 3.499 17 O -0.586 6.586 18 N -0.603 5.603 19 C 0.141 3.859 20 C -0.139 4.139 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.125 4.125 24 C 0.113 3.887 25 H 0.268 0.732 26 H -0.009 1.009 27 H -0.020 1.020 28 H 0.410 0.590 29 H 0.096 0.904 30 H 0.160 0.840 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -20.497 -2.377 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.354 5.354 11 C 0.285 3.715 12 O -0.474 6.474 13 C -0.131 4.131 14 H 0.191 0.809 15 C -0.177 4.177 16 C 0.291 3.709 17 O -0.467 6.467 18 N -0.335 5.335 19 C 0.039 3.961 20 C -0.178 4.178 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.163 4.163 24 C -0.009 4.009 25 H 0.077 0.923 26 H 0.009 0.991 27 H -0.002 1.002 28 H 0.246 0.754 29 H 0.115 0.885 30 H 0.178 0.822 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.141 0.859 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.738 -20.597 -1.741 21.741 hybrid contribution -0.088 1.466 0.378 1.516 sum 6.650 -19.131 -1.363 20.300 Atomic orbital electron populations 1.70128 1.08304 1.28595 1.50001 1.26054 0.95733 1.03909 0.93860 0.85233 0.77936 0.76678 0.79544 1.18293 1.21250 1.18913 1.21608 0.94385 0.90589 1.52869 0.89648 1.18501 0.88674 0.84410 0.93902 1.46152 1.11233 1.05492 1.72487 1.21198 0.89702 0.84999 0.75643 1.90646 1.19215 1.85311 1.52251 1.22431 0.96210 0.91871 1.02607 0.80928 1.22441 1.01341 1.01272 0.92660 1.21505 0.80305 0.80988 0.88131 1.90670 1.69106 1.70367 1.16607 1.48475 1.36792 1.39158 1.09105 1.21738 0.89015 0.88641 0.96735 1.22721 0.95287 0.99793 0.99956 1.22532 1.00931 0.95441 0.96993 1.22331 0.94961 0.96623 1.01118 1.22495 0.99350 0.93206 1.01255 1.22254 1.03057 0.95213 0.80422 0.92302 0.99077 1.00214 0.75441 0.88534 0.82221 0.90881 0.90299 0.93765 0.91514 0.90827 0.89666 0.90636 0.90035 0.90349 0.85902 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 2 C 0.00 0.22 5.46 84.66 0.46 0.69 16 3 Si 0.98 42.14 29.54 68.60 2.03 44.17 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.56 -29.93 9.28 25.60 0.24 -29.70 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.27 14.51 5.43 85.63 0.46 14.97 16 10 N -0.70 -28.20 5.27 -466.79 -2.46 -30.66 16 11 C 0.50 18.29 7.16 87.66 0.63 18.92 16 12 O -0.59 -27.56 15.54 -3.03 -0.05 -27.61 16 13 C -0.11 -2.40 3.54 -10.42 -0.04 -2.44 16 14 H 0.17 2.11 8.14 -2.39 -0.02 2.09 16 15 C -0.14 -2.99 6.38 30.59 0.20 -2.79 16 16 C 0.50 15.25 8.02 87.90 0.71 15.95 16 17 O -0.59 -22.90 17.37 -3.04 -0.05 -22.96 16 18 N -0.60 -15.64 2.67 -789.67 -2.11 -17.74 16 19 C 0.14 3.42 3.55 45.71 0.16 3.58 16 20 C -0.14 -3.47 5.94 31.67 0.19 -3.28 16 21 C -0.12 -2.27 6.62 31.89 0.21 -2.06 16 22 C -0.11 -1.55 6.83 31.67 0.22 -1.33 16 23 C -0.12 -2.03 6.42 31.32 0.20 -1.83 16 24 C 0.11 2.36 5.72 86.89 0.50 2.86 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H -0.02 -1.25 8.14 -2.38 -0.02 -1.27 16 28 H 0.41 13.22 8.14 -92.71 -0.75 12.47 16 29 H 0.10 2.42 7.51 -2.39 -0.02 2.40 16 30 H 0.16 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.06 7.58 -2.38 -0.02 2.04 16 32 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.04 1.46 7.91 -2.39 -0.02 1.45 16 34 H 0.07 1.30 6.60 -2.39 -0.02 1.29 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.17 7.39 -2.39 -0.02 1.16 16 39 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.12 1.48 7.87 -2.39 -0.02 1.47 16 41 H 0.08 2.12 4.94 -2.38 -0.01 2.11 16 Total: -1.00 -79.54 332.47 2.05 -77.48 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.28 Total: 19.77 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 4.13 Total: 13.54 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.28 Total: -104.40 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.10 Total: -50.56 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -79.54 2.05 -77.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332385140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.694 kcal (2) G-P(sol) polarization free energy of solvation -79.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds