Wall clock time and date at job start Tue Mar 31 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99754 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00137 * 180.02562 * 11 10 9 14 14 H 1.09000 * 110.85332 * 62.34010 * 13 11 10 15 15 C 1.54633 * 110.96835 * 298.54916 * 13 11 10 16 16 C 1.51277 * 104.19645 * 266.67655 * 15 13 11 17 17 O 1.21284 * 124.94399 * 163.70979 * 16 15 13 18 18 N 1.34424 * 110.11726 * 343.74891 * 16 15 13 19 19 C 1.46498 * 124.35027 * 179.56700 * 18 16 15 20 20 C 1.54268 * 110.02878 * 57.93871 * 19 18 16 21 21 C 1.54968 * 104.15590 * 217.13439 * 20 19 18 22 22 C 1.54882 * 102.77760 * 37.88690 * 21 20 19 23 23 C 1.53867 * 110.03479 * 300.71559 * 19 18 16 24 24 C 1.46769 * 111.29835 * 359.59109 * 18 16 15 25 25 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 27 27 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 28 28 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 29 29 H 1.08996 * 110.48436 * 25.35534 * 15 13 11 30 30 H 1.09004 * 110.48298 * 147.99713 * 15 13 11 31 31 H 1.09005 * 110.01230 * 179.31955 * 19 18 16 32 32 H 1.08997 * 110.48727 * 335.77468 * 20 19 18 33 33 H 1.08996 * 110.48730 * 98.42393 * 20 19 18 34 34 H 1.09008 * 110.71650 * 279.57020 * 21 20 19 35 35 H 1.08995 * 110.76690 * 156.22458 * 21 20 19 36 36 H 1.09005 * 110.48494 * 203.40559 * 22 21 20 37 37 H 1.08998 * 110.48846 * 80.76242 * 22 21 20 38 38 H 1.08998 * 110.03471 * 238.56596 * 23 19 18 39 39 H 1.08995 * 110.03455 * 0.02562 * 23 19 18 40 40 H 1.08999 * 110.24589 * 258.01699 * 24 18 16 41 41 H 1.09000 * 110.24205 * 136.01198 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7542 -4.8833 0.0011 12 8 0.5618 -5.1049 0.0011 13 6 2.7335 -6.0286 0.0016 14 1 3.3450 -6.0158 0.9039 15 6 3.6177 -6.0013 -1.2667 16 6 2.8930 -6.9006 -2.2436 17 8 3.0951 -6.9334 -3.4390 18 7 1.9917 -7.6575 -1.5942 19 6 1.1111 -8.6328 -2.2419 20 6 1.9512 -9.6830 -2.9978 21 6 1.1290 -9.9757 -4.2784 22 6 0.5679 -8.5811 -4.6514 23 6 0.2316 -7.9327 -3.2926 24 6 2.0029 -7.3809 -0.1528 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6243 -2.5567 0.8903 28 1 3.1570 -3.4352 0.0009 29 1 3.6878 -4.9876 -1.6610 30 1 4.6100 -6.3962 -1.0485 31 1 0.4843 -9.1223 -1.4965 32 1 2.9282 -9.2753 -3.2569 33 1 2.0605 -10.5870 -2.3988 34 1 0.3192 -10.6737 -4.0656 35 1 1.7717 -10.3582 -5.0712 36 1 -0.3315 -8.6818 -5.2590 37 1 1.3213 -7.9950 -5.1777 38 1 -0.8220 -8.0831 -3.0577 39 1 0.4603 -6.8673 -3.3209 40 1 2.5438 -8.1647 0.3775 41 1 0.9831 -7.3038 0.2243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332385141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:52 Heat of formation + Delta-G solvation = -86.079008 kcal Electronic energy + Delta-G solvation = -22422.399083 eV Core-core repulsion = 19108.310686 eV Total energy + Delta-G solvation = -3314.088397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89342 -38.79305 -37.32205 -35.91239 -34.27121 -32.58416 -31.84541 -28.72942 -27.94285 -27.59056 -26.91843 -23.65439 -21.93648 -21.43796 -20.70714 -19.60936 -18.67079 -17.60250 -16.88258 -16.16365 -15.90427 -15.28198 -15.12995 -14.80702 -14.49767 -14.35160 -14.05704 -13.58915 -13.46742 -13.20878 -12.85892 -12.67257 -12.03488 -11.82739 -11.75462 -11.58611 -11.49571 -11.40195 -11.12619 -11.09489 -10.99419 -10.92501 -10.89031 -10.53334 -10.34120 -9.54871 -9.43733 -9.15075 -8.77415 -8.59912 -7.96394 -6.19476 -4.26789 2.68123 3.03313 3.18845 3.23168 3.29260 3.31259 3.89122 4.31352 4.32611 4.39180 4.57311 4.62749 4.82975 4.90430 5.15141 5.17148 5.24122 5.37261 5.42162 5.45967 5.50931 5.53726 5.61761 5.65788 5.76617 5.82335 5.83043 5.88035 5.99983 6.12287 6.24443 6.38130 6.73784 7.20511 7.24739 7.34226 7.46492 7.61333 7.93007 8.28486 8.53577 8.72073 8.99566 9.39919 10.90699 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.003740 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.119712 B = 7484.696368 C = 7638.975920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.708 5.708 11 C 0.504 3.496 12 O -0.548 6.548 13 C -0.127 4.127 14 H 0.120 0.880 15 C -0.149 4.149 16 C 0.520 3.480 17 O -0.528 6.528 18 N -0.609 5.609 19 C 0.157 3.843 20 C -0.134 4.134 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.132 4.132 24 C 0.115 3.885 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.391 0.609 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 -18.713 -1.838 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.355 5.355 11 C 0.288 3.712 12 O -0.427 6.427 13 C -0.149 4.149 14 H 0.138 0.862 15 C -0.189 4.189 16 C 0.307 3.693 17 O -0.404 6.404 18 N -0.343 5.343 19 C 0.054 3.946 20 C -0.172 4.172 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.170 4.170 24 C -0.008 4.008 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.224 0.776 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.968 -18.767 -2.485 19.572 hybrid contribution 0.837 1.157 0.204 1.442 sum 5.804 -17.610 -2.280 18.682 Atomic orbital electron populations 1.69968 1.06132 1.27370 1.48782 1.24948 0.94911 0.99486 0.94619 0.86410 0.79611 0.82595 0.78278 1.20423 1.20998 1.19707 1.21211 0.93277 0.90406 1.53389 0.91844 1.19130 0.88254 0.81900 0.97776 1.46438 1.11243 1.06015 1.71840 1.20058 0.89081 0.84299 0.77763 1.90664 1.16580 1.84616 1.50865 1.22355 0.97456 0.94835 1.00229 0.86158 1.22405 0.99631 1.02529 0.94381 1.20721 0.79818 0.80472 0.88245 1.90693 1.67101 1.68373 1.14249 1.48375 1.37912 1.39815 1.08201 1.21624 0.90350 0.87988 0.94630 1.22747 1.00154 0.97779 0.96527 1.22416 0.98989 0.97245 0.97053 1.22295 1.00692 0.95863 0.96880 1.22469 0.99013 1.01095 0.94456 1.22020 1.03144 0.94475 0.81152 0.92408 0.95547 0.95422 0.77590 0.87360 0.87132 0.89142 0.90311 0.91664 0.91661 0.91601 0.92012 0.90872 0.91342 0.90885 0.90727 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.25 6.48 5.43 -5.19 -0.03 6.46 16 10 N -0.71 -14.15 5.27 -61.47 -0.32 -14.47 16 11 C 0.50 9.32 7.16 -10.99 -0.08 9.24 16 12 O -0.55 -12.38 15.51 5.55 0.09 -12.30 16 13 C -0.13 -1.57 3.54 -90.14 -0.32 -1.89 16 14 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 15 C -0.15 -1.81 6.39 -26.74 -0.17 -1.98 16 16 C 0.52 7.81 6.84 -10.86 -0.07 7.73 16 17 O -0.53 -9.45 15.91 5.55 0.09 -9.36 16 18 N -0.61 -8.06 2.83 -163.58 -0.46 -8.52 16 19 C 0.16 1.88 3.54 -66.82 -0.24 1.65 16 20 C -0.13 -1.44 6.30 -25.03 -0.16 -1.60 16 21 C -0.12 -1.19 6.91 -24.70 -0.17 -1.36 16 22 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 23 C -0.13 -1.77 6.01 -25.61 -0.15 -1.92 16 24 C 0.12 1.34 6.69 -3.12 -0.02 1.32 16 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.39 6.63 8.14 -40.82 -0.33 6.29 16 29 H 0.11 1.44 7.51 -51.93 -0.39 1.05 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.08 1.02 6.49 -51.93 -0.34 0.68 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.23 7.33 -51.93 -0.38 0.85 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 1.29 6.94 -51.93 -0.36 0.93 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -33.30 333.92 -8.26 -41.56 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.40 Total: 4.70 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.00 Total: 2.86 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.05 Total: -48.16 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.17 Total: -21.66 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.30 -8.26 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332385141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.519 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds