Wall clock time and date at job start Tue Mar 31 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99754 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00137 * 180.02562 * 11 10 9 14 14 H 1.09000 * 110.85332 * 62.34010 * 13 11 10 15 15 C 1.54633 * 110.96835 * 298.54916 * 13 11 10 16 16 C 1.51277 * 104.19645 * 266.67655 * 15 13 11 17 17 O 1.21284 * 124.94399 * 163.70979 * 16 15 13 18 18 N 1.34424 * 110.11726 * 343.74891 * 16 15 13 19 19 C 1.46498 * 124.35027 * 179.56700 * 18 16 15 20 20 C 1.54268 * 110.02878 * 57.93871 * 19 18 16 21 21 C 1.54968 * 104.15590 * 217.13439 * 20 19 18 22 22 C 1.54882 * 102.77760 * 37.88690 * 21 20 19 23 23 C 1.53867 * 110.03479 * 300.71559 * 19 18 16 24 24 C 1.46769 * 111.29835 * 359.59109 * 18 16 15 25 25 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 27 27 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 28 28 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 29 29 H 1.08996 * 110.48436 * 25.35534 * 15 13 11 30 30 H 1.09004 * 110.48298 * 147.99713 * 15 13 11 31 31 H 1.09005 * 110.01230 * 179.31955 * 19 18 16 32 32 H 1.08997 * 110.48727 * 335.77468 * 20 19 18 33 33 H 1.08996 * 110.48730 * 98.42393 * 20 19 18 34 34 H 1.09008 * 110.71650 * 279.57020 * 21 20 19 35 35 H 1.08995 * 110.76690 * 156.22458 * 21 20 19 36 36 H 1.09005 * 110.48494 * 203.40559 * 22 21 20 37 37 H 1.08998 * 110.48846 * 80.76242 * 22 21 20 38 38 H 1.08998 * 110.03471 * 238.56596 * 23 19 18 39 39 H 1.08995 * 110.03455 * 0.02562 * 23 19 18 40 40 H 1.08999 * 110.24589 * 258.01699 * 24 18 16 41 41 H 1.09000 * 110.24205 * 136.01198 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7542 -4.8833 0.0011 12 8 0.5618 -5.1049 0.0011 13 6 2.7335 -6.0286 0.0016 14 1 3.3450 -6.0158 0.9039 15 6 3.6177 -6.0013 -1.2667 16 6 2.8930 -6.9006 -2.2436 17 8 3.0951 -6.9334 -3.4390 18 7 1.9917 -7.6575 -1.5942 19 6 1.1111 -8.6328 -2.2419 20 6 1.9512 -9.6830 -2.9978 21 6 1.1290 -9.9757 -4.2784 22 6 0.5679 -8.5811 -4.6514 23 6 0.2316 -7.9327 -3.2926 24 6 2.0029 -7.3809 -0.1528 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6243 -2.5567 0.8903 28 1 3.1570 -3.4352 0.0009 29 1 3.6878 -4.9876 -1.6610 30 1 4.6100 -6.3962 -1.0485 31 1 0.4843 -9.1223 -1.4965 32 1 2.9282 -9.2753 -3.2569 33 1 2.0605 -10.5870 -2.3988 34 1 0.3192 -10.6737 -4.0656 35 1 1.7717 -10.3582 -5.0712 36 1 -0.3315 -8.6818 -5.2590 37 1 1.3213 -7.9950 -5.1777 38 1 -0.8220 -8.0831 -3.0577 39 1 0.4603 -6.8673 -3.3209 40 1 2.5438 -8.1647 0.3775 41 1 0.9831 -7.3038 0.2243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332385141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:51 Heat of formation + Delta-G solvation = -109.687157 kcal Electronic energy + Delta-G solvation = -22423.422809 eV Core-core repulsion = 19108.310686 eV Total energy + Delta-G solvation = -3315.112123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01996 -40.24828 -38.35851 -37.12414 -36.14299 -34.43585 -33.04987 -29.67668 -29.58125 -28.61451 -28.26811 -25.32462 -23.48583 -22.46836 -21.63088 -21.14385 -19.75902 -19.12348 -17.90954 -17.88906 -17.12803 -16.84181 -16.58833 -16.04603 -15.97555 -15.70022 -15.25067 -14.80028 -14.61886 -14.27303 -14.22248 -14.09848 -13.98006 -13.35826 -12.94162 -12.88721 -12.74025 -12.55970 -12.52925 -12.39188 -12.22151 -12.07660 -11.97189 -11.82927 -11.51755 -11.49735 -10.81889 -10.76515 -10.64933 -9.85027 -9.62727 -8.30520 -6.47092 1.42611 1.44792 1.55821 1.56449 1.70384 2.06611 2.30189 2.53374 3.04746 3.30994 3.36707 3.64985 3.68173 3.79092 3.90427 4.02936 4.37647 4.42283 4.46511 4.51179 4.53451 4.63350 4.69997 4.76303 4.83765 4.89169 4.90972 4.99465 5.06093 5.10867 5.19018 5.22120 5.23959 5.43908 5.47187 5.66908 5.74436 5.83643 6.17760 6.64251 6.87347 7.18606 7.22411 7.46501 8.81672 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.003740 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.119712 B = 7484.696368 C = 7638.975920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.252 1.252 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.704 5.704 11 C 0.497 3.503 12 O -0.596 6.596 13 C -0.109 4.109 14 H 0.172 0.828 15 C -0.141 4.141 16 C 0.503 3.497 17 O -0.569 6.569 18 N -0.610 5.610 19 C 0.148 3.852 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.135 4.135 24 C 0.114 3.886 25 H 0.268 0.732 26 H -0.020 1.020 27 H -0.009 1.009 28 H 0.409 0.591 29 H 0.093 0.907 30 H 0.157 0.843 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.025 0.975 40 H 0.126 0.874 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 -20.251 -0.580 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.176 1.176 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.354 5.354 11 C 0.284 3.716 12 O -0.477 6.477 13 C -0.130 4.130 14 H 0.190 0.810 15 C -0.181 4.181 16 C 0.291 3.709 17 O -0.449 6.449 18 N -0.343 5.343 19 C 0.046 3.954 20 C -0.164 4.164 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.174 4.174 24 C -0.008 4.008 25 H 0.077 0.923 26 H -0.003 1.003 27 H 0.009 0.991 28 H 0.246 0.754 29 H 0.112 0.888 30 H 0.175 0.825 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.144 0.856 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.535 -20.343 -1.201 21.727 hybrid contribution -0.053 1.596 -0.209 1.610 sum 7.481 -18.747 -1.410 20.234 Atomic orbital electron populations 1.70134 1.08310 1.28547 1.50056 1.26063 0.95749 1.03939 0.93868 0.85174 0.78663 0.77027 0.78479 1.19951 1.20954 1.17569 1.21633 0.94379 0.90562 1.52762 0.89649 1.18512 0.88690 0.84462 0.93891 1.46161 1.11225 1.05535 1.72461 1.21252 0.89711 0.85049 0.75539 1.90646 1.19336 1.85347 1.52397 1.22398 0.96166 0.91892 1.02591 0.81027 1.22458 1.01358 1.01319 0.92950 1.21323 0.80331 0.80968 0.88244 1.90668 1.68530 1.69657 1.16029 1.48545 1.37216 1.39477 1.09047 1.21856 0.90617 0.88049 0.94893 1.22689 0.98601 0.98131 0.96968 1.22424 0.99623 0.95972 0.96946 1.22262 1.00501 0.96952 0.95996 1.22486 1.00042 0.98473 0.96351 1.22249 1.02848 0.95347 0.80369 0.92290 1.00253 0.99069 0.75450 0.88815 0.82526 0.86801 0.92667 0.88808 0.89242 0.90970 0.90770 0.93824 0.90503 0.95599 0.85604 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.98 42.27 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.56 -29.99 9.28 25.60 0.24 -29.75 16 8 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 14.55 5.43 85.63 0.46 15.01 16 10 N -0.70 -28.44 5.27 -466.77 -2.46 -30.90 16 11 C 0.50 18.41 7.16 87.66 0.63 19.04 16 12 O -0.60 -28.00 15.51 -3.04 -0.05 -28.05 16 13 C -0.11 -2.38 3.54 -10.48 -0.04 -2.42 16 14 H 0.17 2.11 8.14 -2.39 -0.02 2.09 16 15 C -0.14 -3.07 6.39 30.59 0.20 -2.87 16 16 C 0.50 14.85 6.84 87.90 0.60 15.45 16 17 O -0.57 -21.03 15.91 -3.04 -0.05 -21.08 16 18 N -0.61 -15.38 2.83 -790.02 -2.24 -17.62 16 19 C 0.15 3.39 3.54 45.71 0.16 3.55 16 20 C -0.13 -2.46 6.30 31.70 0.20 -2.26 16 21 C -0.11 -2.04 6.91 31.91 0.22 -1.82 16 22 C -0.12 -2.92 6.83 31.67 0.22 -2.70 16 23 C -0.13 -3.75 6.01 31.32 0.19 -3.56 16 24 C 0.11 2.32 6.69 86.83 0.58 2.90 16 25 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 26 H -0.02 -1.29 8.14 -2.38 -0.02 -1.30 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H 0.41 13.37 8.14 -92.71 -0.75 12.61 16 29 H 0.09 2.38 7.51 -2.39 -0.02 2.36 16 30 H 0.16 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.11 2.06 8.09 -2.38 -0.02 2.04 16 32 H 0.05 1.37 6.49 -2.39 -0.02 1.36 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.04 1.31 8.06 -2.39 -0.02 1.29 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.03 0.94 7.33 -2.39 -0.02 0.92 16 40 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.98 6.94 -2.39 -0.02 1.96 16 Total: -1.00 -79.78 333.92 1.91 -77.87 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.27 Total: 20.40 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 4.12 Total: 11.21 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -4.41 Total: -104.65 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.10 Total: -49.12 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -79.78 1.91 -77.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332385141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.821 kcal (2) G-P(sol) polarization free energy of solvation -79.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds