Wall clock time and date at job start Tue Mar 31 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99691 * 2 1 4 4 H 1.48495 * 109.47374 * 270.00129 * 3 2 1 5 5 H 1.48496 * 109.46934 * 150.00095 * 3 2 1 6 6 H 1.48497 * 109.47025 * 30.00560 * 3 2 1 7 7 C 1.38945 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00429 * 204.23513 * 7 2 1 9 9 N 1.37105 * 120.00127 * 24.23625 * 7 2 1 10 10 C 1.34769 * 119.99920 * 41.26252 * 9 7 2 11 11 O 1.21291 * 120.00221 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00051 * 180.02562 * 10 9 7 13 13 H 1.08997 * 109.29641 * 319.58478 * 12 10 9 14 14 C 1.52918 * 109.30025 * 78.96534 * 12 10 9 15 15 C 1.53348 * 108.67114 * 171.06875 * 14 12 10 16 16 C 1.53067 * 108.42244 * 292.46551 * 15 14 12 17 17 C 1.50177 * 109.89292 * 48.90582 * 16 15 14 18 18 O 1.21279 * 118.24978 * 162.39501 * 17 16 15 19 19 N 1.33352 * 123.50817 * 342.41367 * 17 16 15 20 20 C 1.46504 * 119.99862 * 221.27136 * 9 7 2 21 21 C 1.54266 * 110.03405 * 56.37449 * 20 9 7 22 22 C 1.54890 * 104.19418 * 217.10369 * 21 20 9 23 23 C 1.54890 * 102.74852 * 37.94670 * 22 21 20 24 24 C 1.53876 * 110.02862 * 299.20708 * 20 9 7 25 25 H 0.96998 * 119.99500 * 185.76873 * 1 2 3 26 26 H 1.08994 * 109.60475 * 290.82321 * 14 12 10 27 27 H 1.08992 * 109.60415 * 51.31401 * 14 12 10 28 28 H 1.09001 * 109.67260 * 172.73609 * 15 14 12 29 29 H 1.08993 * 109.70470 * 52.21787 * 15 14 12 30 30 H 1.09001 * 109.40964 * 288.77330 * 16 15 14 31 31 H 1.09005 * 109.40171 * 169.03313 * 16 15 14 32 32 H 0.96997 * 117.95011 * 182.20018 * 19 17 16 33 33 H 1.08994 * 110.01343 * 177.81499 * 20 9 7 34 34 H 1.09003 * 110.48607 * 335.78395 * 21 20 9 35 35 H 1.08990 * 110.48640 * 98.42588 * 21 20 9 36 36 H 1.08995 * 110.76116 * 279.62689 * 22 21 20 37 37 H 1.09009 * 110.75316 * 156.25410 * 22 21 20 38 38 H 1.09004 * 110.48537 * 203.38174 * 23 22 21 39 39 H 1.08998 * 110.49009 * 80.73460 * 23 22 21 40 40 H 1.09004 * 110.02605 * 238.56948 * 24 20 9 41 41 H 1.08996 * 110.03338 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 3.5456 1.4403 0.7000 6 1 1.4455 2.6526 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0175 -1.2446 0.3833 9 7 1.4141 -2.3381 -0.4885 10 6 0.6691 -2.2795 -1.6099 11 8 0.5251 -1.2230 -2.1879 12 6 0.0148 -3.5269 -2.1460 13 1 0.7044 -4.3654 -2.0492 14 6 -1.2494 -3.8217 -1.3377 15 6 -2.0208 -4.9529 -2.0283 16 6 -2.5495 -4.4311 -3.3666 17 6 -1.4450 -3.7488 -4.1213 18 8 -1.5902 -3.5669 -5.3116 19 7 -0.3128 -3.3325 -3.5529 20 6 1.5884 -3.6144 0.2095 21 6 1.1268 -3.4823 1.6755 22 6 2.1330 -4.3513 2.4702 23 6 3.4715 -4.0787 1.7399 24 6 3.0791 -3.9935 0.2503 25 1 -0.4849 -0.8358 0.0844 26 1 -0.9749 -4.1291 -0.3287 27 1 -1.8720 -2.9282 -1.2938 28 1 -2.8555 -5.2645 -1.4003 29 1 -1.3559 -5.7991 -2.2011 30 1 -3.3565 -3.7211 -3.1853 31 1 -2.9291 -5.2657 -3.9562 32 1 0.3333 -2.8717 -4.1107 33 1 1.0181 -4.3954 -0.2933 34 1 1.1805 -2.4432 2.0002 35 1 0.1141 -3.8678 1.7928 36 1 1.8665 -5.4063 2.4071 37 1 2.1871 -4.0269 3.5095 38 1 4.1697 -4.8994 1.9041 39 1 3.9038 -3.1359 2.0750 40 1 3.2321 -4.9591 -0.2319 41 1 3.6729 -3.2278 -0.2487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333043605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:10 Heat of formation + Delta-G solvation = -77.453020 kcal Electronic energy + Delta-G solvation = -23679.130621 eV Core-core repulsion = 20365.416275 eV Total energy + Delta-G solvation = -3313.714346 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.33119 -38.94316 -37.08288 -35.81863 -33.68144 -32.64278 -31.66557 -29.53426 -28.24403 -26.95304 -25.55767 -23.71338 -22.54893 -20.33817 -20.21699 -19.68614 -18.83543 -17.18601 -16.71481 -16.51585 -15.85410 -15.07887 -14.82820 -14.69735 -14.11342 -13.87716 -13.79696 -13.61273 -13.46828 -13.06128 -12.85714 -12.65593 -11.78093 -11.64178 -11.35235 -11.12652 -10.99761 -10.92295 -10.91066 -10.74603 -10.71558 -10.62773 -10.30102 -10.21854 -10.14523 -9.72376 -9.59165 -9.01336 -8.66684 -8.10289 -7.47725 -6.44638 -3.93334 2.92342 3.40126 3.48941 3.53453 3.59892 3.85873 4.27098 4.61943 4.76846 4.85579 4.90844 4.97593 5.03157 5.06631 5.23616 5.35033 5.42454 5.54046 5.63288 5.71315 5.77110 5.85933 5.86194 5.91576 5.96446 6.01233 6.03723 6.08673 6.26028 6.27694 6.33338 6.42170 6.63443 6.76516 6.95168 7.09684 7.68024 7.85147 8.32003 8.50913 8.72869 9.07182 9.48404 9.96835 10.84585 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.007749 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.181946 B = 3612.574057 C = 4879.633543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.041 3.959 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.425 4.425 8 H 0.075 0.925 9 N -0.441 5.441 10 C 0.436 3.564 11 O -0.529 6.529 12 C 0.125 3.875 13 H 0.081 0.919 14 C -0.128 4.128 15 C -0.121 4.121 16 C -0.135 4.135 17 C 0.521 3.479 18 O -0.571 6.571 19 N -0.689 5.689 20 C 0.121 3.879 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.131 4.131 25 H 0.270 0.730 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.403 0.597 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 -12.219 3.970 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.173 4.173 3 Si 0.901 3.099 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.551 4.551 8 H 0.092 0.908 9 N -0.163 5.163 10 C 0.222 3.778 11 O -0.408 6.408 12 C 0.015 3.985 13 H 0.099 0.901 14 C -0.166 4.166 15 C -0.158 4.158 16 C -0.175 4.175 17 C 0.308 3.692 18 O -0.451 6.451 19 N -0.340 5.340 20 C 0.017 3.983 21 C -0.165 4.165 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.170 4.170 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.240 0.760 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.180 -10.059 3.135 10.538 hybrid contribution 0.484 -1.593 0.052 1.665 sum 0.303 -11.652 3.187 12.084 Atomic orbital electron populations 1.70550 1.07562 1.30969 1.37890 1.26074 0.95886 1.02126 0.93179 0.83447 0.74482 0.74928 0.77080 1.21125 1.21458 1.21278 1.19789 0.99608 0.87097 1.48601 0.90764 1.43594 1.45953 1.06931 1.19811 1.20187 0.85503 0.89422 0.82714 1.90667 1.61621 1.29995 1.58484 1.20964 0.97378 0.98361 0.81765 0.90120 1.21894 0.95773 0.99749 0.99223 1.21675 1.00478 0.98078 0.95613 1.21639 0.97314 1.01682 0.96819 1.20069 0.82987 0.78490 0.87623 1.90718 1.79688 1.58615 1.16105 1.45212 1.20314 1.58317 1.10129 1.21871 0.95225 0.87863 0.93367 1.22667 0.97147 1.02077 0.94656 1.22429 0.95740 0.99001 0.98780 1.22263 0.96849 1.00968 0.95414 1.22457 0.97227 1.00638 0.96638 0.91926 0.89529 0.90167 0.90395 0.91179 0.88293 0.88447 0.76049 0.91249 0.89067 0.92866 0.92331 0.92115 0.92704 0.91506 0.92775 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.24 12.26 55.50 0.68 -23.56 16 2 C 0.04 1.11 4.17 -17.47 -0.07 1.04 16 3 Si 1.07 25.01 29.98 -169.99 -5.10 19.91 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.42 -10.78 7.30 -14.93 -0.11 -10.89 16 8 H 0.07 1.87 7.32 -52.49 -0.38 1.49 16 9 N -0.44 -9.78 2.23 -106.54 -0.24 -10.02 16 10 C 0.44 10.01 5.60 -10.99 -0.06 9.94 16 11 O -0.53 -14.87 14.07 5.55 0.08 -14.79 16 12 C 0.12 2.18 2.63 -69.52 -0.18 2.00 16 13 H 0.08 1.24 6.69 -51.93 -0.35 0.90 16 14 C -0.13 -1.91 5.04 -26.59 -0.13 -2.05 16 15 C -0.12 -1.38 6.03 -26.52 -0.16 -1.54 16 16 C -0.13 -1.78 6.03 -28.10 -0.17 -1.94 16 17 C 0.52 9.32 7.71 -11.87 -0.09 9.23 16 18 O -0.57 -12.19 17.78 5.56 0.10 -12.09 16 19 N -0.69 -12.66 4.79 -55.99 -0.27 -12.93 16 20 C 0.12 2.09 2.64 -66.81 -0.18 1.91 16 21 C -0.13 -2.08 6.41 -25.07 -0.16 -2.24 16 22 C -0.12 -1.62 6.91 -24.74 -0.17 -1.79 16 23 C -0.12 -1.63 6.83 -25.07 -0.17 -1.81 16 24 C -0.13 -2.06 6.21 -25.61 -0.16 -2.22 16 25 H 0.27 7.75 7.40 -40.82 -0.30 7.45 16 26 H 0.09 1.19 6.80 -51.93 -0.35 0.84 16 27 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.40 7.91 8.44 -40.82 -0.34 7.57 16 33 H 0.07 1.05 4.62 -51.93 -0.24 0.81 16 34 H 0.09 1.83 6.97 -51.93 -0.36 1.47 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.39 7.08 -51.93 -0.37 1.02 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -32.90 320.77 -7.87 -40.77 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.14 Total: 8.21 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.82 Total: -0.34 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.18 Total: -46.51 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: 0.18 Total: -26.88 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.10 Total: 19.91 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.90 -7.87 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333043605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.679 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds