Wall clock time and date at job start Tue Mar 31 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99691 * 2 1 4 4 H 1.48495 * 109.47374 * 270.00129 * 3 2 1 5 5 H 1.48496 * 109.46934 * 150.00095 * 3 2 1 6 6 H 1.48497 * 109.47025 * 30.00560 * 3 2 1 7 7 C 1.38945 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00429 * 204.23513 * 7 2 1 9 9 N 1.37105 * 120.00127 * 24.23625 * 7 2 1 10 10 C 1.34769 * 119.99920 * 41.26252 * 9 7 2 11 11 O 1.21291 * 120.00221 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00051 * 180.02562 * 10 9 7 13 13 H 1.08997 * 109.29641 * 319.58478 * 12 10 9 14 14 C 1.52918 * 109.30025 * 78.96534 * 12 10 9 15 15 C 1.53348 * 108.67114 * 171.06875 * 14 12 10 16 16 C 1.53067 * 108.42244 * 292.46551 * 15 14 12 17 17 C 1.50177 * 109.89292 * 48.90582 * 16 15 14 18 18 O 1.21279 * 118.24978 * 162.39501 * 17 16 15 19 19 N 1.33352 * 123.50817 * 342.41367 * 17 16 15 20 20 C 1.46504 * 119.99862 * 221.27136 * 9 7 2 21 21 C 1.54266 * 110.03405 * 56.37449 * 20 9 7 22 22 C 1.54890 * 104.19418 * 217.10369 * 21 20 9 23 23 C 1.54890 * 102.74852 * 37.94670 * 22 21 20 24 24 C 1.53876 * 110.02862 * 299.20708 * 20 9 7 25 25 H 0.96998 * 119.99500 * 185.76873 * 1 2 3 26 26 H 1.08994 * 109.60475 * 290.82321 * 14 12 10 27 27 H 1.08992 * 109.60415 * 51.31401 * 14 12 10 28 28 H 1.09001 * 109.67260 * 172.73609 * 15 14 12 29 29 H 1.08993 * 109.70470 * 52.21787 * 15 14 12 30 30 H 1.09001 * 109.40964 * 288.77330 * 16 15 14 31 31 H 1.09005 * 109.40171 * 169.03313 * 16 15 14 32 32 H 0.96997 * 117.95011 * 182.20018 * 19 17 16 33 33 H 1.08994 * 110.01343 * 177.81499 * 20 9 7 34 34 H 1.09003 * 110.48607 * 335.78395 * 21 20 9 35 35 H 1.08990 * 110.48640 * 98.42588 * 21 20 9 36 36 H 1.08995 * 110.76116 * 279.62689 * 22 21 20 37 37 H 1.09009 * 110.75316 * 156.25410 * 22 21 20 38 38 H 1.09004 * 110.48537 * 203.38174 * 23 22 21 39 39 H 1.08998 * 110.49009 * 80.73460 * 23 22 21 40 40 H 1.09004 * 110.02605 * 238.56948 * 24 20 9 41 41 H 1.08996 * 110.03338 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 3.5456 1.4403 0.7000 6 1 1.4455 2.6526 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0175 -1.2446 0.3833 9 7 1.4141 -2.3381 -0.4885 10 6 0.6691 -2.2795 -1.6099 11 8 0.5251 -1.2230 -2.1879 12 6 0.0148 -3.5269 -2.1460 13 1 0.7044 -4.3654 -2.0492 14 6 -1.2494 -3.8217 -1.3377 15 6 -2.0208 -4.9529 -2.0283 16 6 -2.5495 -4.4311 -3.3666 17 6 -1.4450 -3.7488 -4.1213 18 8 -1.5902 -3.5669 -5.3116 19 7 -0.3128 -3.3325 -3.5529 20 6 1.5884 -3.6144 0.2095 21 6 1.1268 -3.4823 1.6755 22 6 2.1330 -4.3513 2.4702 23 6 3.4715 -4.0787 1.7399 24 6 3.0791 -3.9935 0.2503 25 1 -0.4849 -0.8358 0.0844 26 1 -0.9749 -4.1291 -0.3287 27 1 -1.8720 -2.9282 -1.2938 28 1 -2.8555 -5.2645 -1.4003 29 1 -1.3559 -5.7991 -2.2011 30 1 -3.3565 -3.7211 -3.1853 31 1 -2.9291 -5.2657 -3.9562 32 1 0.3333 -2.8717 -4.1107 33 1 1.0181 -4.3954 -0.2933 34 1 1.1805 -2.4432 2.0002 35 1 0.1141 -3.8678 1.7928 36 1 1.8665 -5.4063 2.4071 37 1 2.1871 -4.0269 3.5095 38 1 4.1697 -4.8994 1.9041 39 1 3.9038 -3.1359 2.0750 40 1 3.2321 -4.9591 -0.2319 41 1 3.6729 -3.2278 -0.2487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333043605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:09 Heat of formation + Delta-G solvation = -100.189150 kcal Electronic energy + Delta-G solvation = -23680.116534 eV Core-core repulsion = 20365.416275 eV Total energy + Delta-G solvation = -3314.700259 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.80461 -40.48427 -38.55337 -37.29365 -35.41435 -33.92331 -33.49696 -30.94851 -29.47549 -28.35344 -27.12094 -25.34260 -23.77228 -21.88427 -21.50328 -21.20028 -20.08250 -18.90605 -18.19489 -18.09294 -17.30268 -16.37384 -16.28232 -16.12648 -15.78061 -15.60195 -15.20530 -15.08086 -14.58856 -14.44777 -14.22699 -14.06835 -13.48661 -13.03274 -12.82430 -12.65028 -12.53488 -12.31999 -12.06869 -11.96993 -11.94459 -11.90801 -11.88625 -11.76538 -11.38215 -11.35475 -11.08101 -10.70721 -10.43573 -9.85487 -9.38284 -8.52479 -5.97540 1.47591 1.52932 1.58689 1.71782 1.99162 2.24831 2.50979 2.92578 3.27946 3.55910 3.66266 3.73452 3.76219 3.85412 3.91630 4.09672 4.14282 4.29242 4.48891 4.54731 4.64835 4.75017 4.76398 4.78924 4.80738 4.86388 4.93446 5.02835 5.08402 5.15273 5.23950 5.28414 5.42059 5.48305 5.59412 5.64190 5.85262 6.24619 6.30334 6.86290 7.09094 7.17732 7.56112 8.13518 8.76592 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.007749 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.181946 B = 3612.574057 C = 4879.633543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C -0.006 4.006 3 Si 1.106 2.894 4 H -0.300 1.300 5 H -0.259 1.259 6 H -0.286 1.286 7 C -0.420 4.420 8 H 0.070 0.930 9 N -0.449 5.449 10 C 0.426 3.574 11 O -0.593 6.593 12 C 0.135 3.865 13 H 0.114 0.886 14 C -0.125 4.125 15 C -0.106 4.106 16 C -0.130 4.130 17 C 0.513 3.487 18 O -0.613 6.613 19 N -0.695 5.695 20 C 0.114 3.886 21 C -0.127 4.127 22 C -0.110 4.110 23 C -0.115 4.115 24 C -0.130 4.130 25 H 0.258 0.742 26 H 0.103 0.897 27 H 0.047 0.953 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.390 0.610 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -15.941 5.318 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.213 4.213 3 Si 0.930 3.070 4 H -0.227 1.227 5 H -0.183 1.183 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.088 0.912 9 N -0.170 5.170 10 C 0.214 3.786 11 O -0.475 6.475 12 C 0.027 3.973 13 H 0.131 0.869 14 C -0.163 4.163 15 C -0.143 4.143 16 C -0.169 4.169 17 C 0.303 3.697 18 O -0.497 6.497 19 N -0.344 5.344 20 C 0.011 3.989 21 C -0.165 4.165 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.168 4.168 25 H 0.068 0.932 26 H 0.122 0.878 27 H 0.066 0.934 28 H 0.132 0.868 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.224 0.776 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.133 -13.830 4.553 14.561 hybrid contribution 0.554 -0.463 -0.401 0.826 sum 0.421 -14.293 4.151 14.890 Atomic orbital electron populations 1.70643 1.08476 1.30226 1.41463 1.27077 0.96041 1.05094 0.93075 0.83041 0.75067 0.72526 0.76370 1.22730 1.18279 1.21196 1.19834 0.99355 0.88374 1.47148 0.91249 1.43793 1.45186 1.07948 1.20067 1.21169 0.84680 0.90525 0.82246 1.90627 1.63661 1.32889 1.60333 1.20999 0.99040 0.95983 0.81321 0.86870 1.21919 0.94265 1.00070 1.00083 1.21687 1.01561 0.96804 0.94287 1.21735 0.95277 1.02210 0.97709 1.21039 0.83309 0.77918 0.87481 1.90691 1.80334 1.60437 1.18211 1.45405 1.20519 1.58081 1.10366 1.22234 0.97071 0.85928 0.93712 1.22611 0.99254 1.00202 0.94468 1.22411 0.93811 1.00096 0.98410 1.22261 0.97920 1.01092 0.94033 1.22457 0.95277 1.01097 0.98004 0.93166 0.87836 0.93437 0.86846 0.88712 0.87948 0.85730 0.77554 0.88213 0.93672 0.91241 0.89021 0.91440 0.89648 0.93772 0.89520 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.89 12.26 21.66 0.27 -52.62 16 2 C -0.01 -0.31 4.17 84.92 0.35 0.04 16 3 Si 1.11 52.23 29.98 68.60 2.06 54.29 16 4 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 5 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.42 -21.95 7.30 84.04 0.61 -21.33 16 8 H 0.07 3.61 7.32 -2.91 -0.02 3.59 16 9 N -0.45 -20.09 2.23 -609.38 -1.36 -21.45 16 10 C 0.43 19.91 5.60 87.66 0.49 20.40 16 11 O -0.59 -34.87 14.07 -3.06 -0.04 -34.91 16 12 C 0.14 4.55 2.63 44.36 0.12 4.67 16 13 H 0.11 3.08 6.69 -2.39 -0.02 3.07 16 14 C -0.13 -3.42 5.04 30.68 0.15 -3.26 16 15 C -0.11 -1.92 6.03 30.73 0.19 -1.73 16 16 C -0.13 -3.03 6.03 29.71 0.18 -2.85 16 17 C 0.51 17.95 7.71 87.71 0.68 18.63 16 18 O -0.61 -26.37 17.78 -3.03 -0.05 -26.42 16 19 N -0.70 -25.46 4.79 -450.22 -2.16 -27.62 16 20 C 0.11 3.68 2.64 45.72 0.12 3.80 16 21 C -0.13 -3.92 6.41 31.67 0.20 -3.72 16 22 C -0.11 -2.51 6.91 31.89 0.22 -2.29 16 23 C -0.12 -2.88 6.83 31.67 0.22 -2.66 16 24 C -0.13 -3.75 6.21 31.32 0.19 -3.56 16 25 H 0.26 15.58 7.40 -92.71 -0.69 14.89 16 26 H 0.10 2.47 6.80 -2.39 -0.02 2.45 16 27 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 28 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.34 8.13 -2.39 -0.02 1.32 16 30 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.39 15.86 8.44 -92.71 -0.78 15.08 16 33 H 0.10 2.59 4.62 -2.39 -0.01 2.58 16 34 H 0.04 1.83 6.97 -2.39 -0.02 1.81 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.04 1.53 7.08 -2.39 -0.02 1.51 16 Total: -1.00 -78.56 320.77 2.78 -75.79 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.34 Total: 26.81 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 3.73 Total: 6.13 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -3.25 Total: -101.69 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -0.10 Total: -61.33 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 2.06 Total: 54.29 kcal Total: -78.56 2.78 -75.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333043605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.404 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds