Wall clock time and date at job start Tue Mar 31 2020 02:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86806 * 120.00172 * 2 1 4 4 H 1.48501 * 109.46694 * 269.99718 * 3 2 1 5 5 H 1.48502 * 109.46751 * 29.99445 * 3 2 1 6 6 H 1.48494 * 109.47248 * 149.99505 * 3 2 1 7 7 C 1.38952 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99769 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99953 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99662 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00447 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00078 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.87609 * 301.02334 * 12 10 9 14 14 C 1.54383 * 110.02815 * 62.07846 * 12 10 9 15 15 C 1.55158 * 102.91824 * 141.65044 * 14 12 10 16 16 C 1.54909 * 101.61642 * 324.54893 * 15 14 12 17 17 N 1.47016 * 109.88830 * 179.97438 * 12 10 9 18 18 C 1.34782 * 125.64850 * 61.44862 * 17 12 10 19 19 O 1.21276 * 119.99741 * 0.02562 * 18 17 12 20 20 C 1.50693 * 119.99974 * 180.02562 * 18 17 12 21 21 C 1.54267 * 110.03600 * 297.16975 * 20 18 17 22 22 C 1.54885 * 104.19624 * 217.10703 * 21 20 18 23 23 C 1.54884 * 102.75121 * 37.94160 * 22 21 20 24 24 C 1.53876 * 110.03166 * 180.02562 * 20 18 17 25 25 H 0.97000 * 120.00023 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00196 * 359.97438 * 9 7 2 27 27 H 1.08999 * 110.70275 * 23.30828 * 14 12 10 28 28 H 1.08993 * 110.75646 * 260.02054 * 14 12 10 29 29 H 1.09002 * 111.00366 * 206.45412 * 15 14 12 30 30 H 1.09002 * 111.00429 * 82.64474 * 15 14 12 31 31 H 1.09000 * 110.36449 * 155.82966 * 16 15 14 32 32 H 1.09002 * 110.36579 * 278.03887 * 16 15 14 33 33 H 1.09003 * 110.01736 * 58.61135 * 20 18 17 34 34 H 1.09002 * 110.48369 * 335.78823 * 21 20 18 35 35 H 1.08998 * 110.48442 * 98.42532 * 21 20 18 36 36 H 1.08997 * 110.75652 * 279.62276 * 22 21 20 37 37 H 1.09001 * 110.91288 * 156.33035 * 22 21 20 38 38 H 1.08996 * 110.49169 * 203.37626 * 23 22 21 39 39 H 1.09001 * 110.59823 * 80.78939 * 23 22 21 40 40 H 1.09000 * 110.03285 * 238.56925 * 24 20 18 41 41 H 1.08999 * 110.03036 * 359.95449 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0536 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5606 -2.3706 0.0011 13 1 5.9312 -1.8423 -0.8774 14 6 6.0894 -1.6915 1.2827 15 6 7.3224 -2.5582 1.6511 16 6 6.8482 -3.9710 1.2282 17 7 6.0607 -3.7531 0.0017 18 6 5.8356 -4.6703 -0.9600 19 8 5.1693 -4.3799 -1.9308 20 6 6.4118 -6.0565 -0.8288 21 6 7.9530 -5.9896 -0.8204 22 6 8.3921 -7.2464 -1.6119 23 6 7.3297 -7.3311 -2.7358 24 6 6.0160 -6.9093 -2.0469 25 1 -0.4850 0.8400 -0.0004 26 1 3.8648 -0.3633 0.0007 27 1 5.3416 -1.7282 2.0748 28 1 6.3877 -0.6629 1.0799 29 1 7.5227 -2.5175 2.7218 30 1 8.1992 -2.2531 1.0799 31 1 7.7048 -4.6122 1.0203 32 1 6.2259 -4.4113 2.0073 33 1 6.0528 -6.5246 0.0878 34 1 8.2982 -5.0843 -1.3198 35 1 8.3311 -6.0306 0.2011 36 1 8.3567 -8.1333 -0.9792 37 1 9.3890 -7.1131 -2.0320 38 1 7.2529 -8.3511 -3.1122 39 1 7.5731 -6.6438 -3.5461 40 1 5.4652 -7.7919 -1.7216 41 1 5.4064 -6.3207 -2.7325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334476814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:34 Heat of formation + Delta-G solvation = -74.095018 kcal Electronic energy + Delta-G solvation = -22889.468673 eV Core-core repulsion = 19575.899941 eV Total energy + Delta-G solvation = -3313.568732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37463 -38.57908 -36.99029 -36.44590 -33.90270 -31.91494 -31.36646 -29.73183 -28.80944 -28.48180 -25.02337 -23.75094 -21.43761 -21.17881 -20.83041 -19.38284 -18.85863 -17.95330 -17.12629 -16.68461 -15.68791 -15.42888 -14.96950 -14.65832 -14.20287 -13.93789 -13.83117 -13.47059 -13.24094 -13.04532 -12.75127 -12.56713 -12.23866 -12.03554 -11.53896 -11.51906 -11.43281 -11.28743 -11.11381 -11.09689 -10.92825 -10.87777 -10.71342 -10.55294 -10.47821 -9.92787 -9.51234 -9.30988 -8.81717 -8.11989 -8.03192 -6.25466 -3.76290 3.02309 3.04537 3.10780 3.17957 3.26034 3.76941 4.14665 4.41461 4.48044 4.56394 4.60197 4.72017 4.80503 4.92869 5.17100 5.29016 5.32738 5.33964 5.39349 5.45667 5.47215 5.53909 5.61172 5.64058 5.73295 5.74379 5.82419 5.88766 5.93508 5.99595 6.03671 6.13180 6.24955 6.27059 6.40692 6.60019 7.62282 7.87473 8.20024 8.59408 8.69252 9.01306 9.48053 9.89072 10.88016 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.004758 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.290874 B = 5883.996976 C = 6555.261290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.118 0.882 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.557 6.557 12 C 0.123 3.877 13 H 0.086 0.914 14 C -0.126 4.126 15 C -0.130 4.130 16 C 0.094 3.906 17 N -0.598 5.598 18 C 0.540 3.460 19 O -0.518 6.518 20 C -0.106 4.106 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.120 4.120 25 H 0.272 0.728 26 H 0.369 0.631 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.115 -7.823 2.381 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.430 4.430 8 H 0.136 0.864 9 N -0.229 5.229 10 C 0.234 3.766 11 O -0.438 6.438 12 C 0.015 3.985 13 H 0.104 0.896 14 C -0.165 4.165 15 C -0.168 4.168 16 C -0.029 4.029 17 N -0.333 5.333 18 C 0.328 3.672 19 O -0.392 6.392 20 C -0.127 4.127 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.158 4.158 25 H 0.083 0.917 26 H 0.202 0.798 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 20.090 -8.341 1.769 21.824 hybrid contribution 0.382 1.482 0.162 1.539 sum 20.472 -6.859 1.931 21.676 Atomic orbital electron populations 1.69621 1.05625 1.27371 1.49758 1.25017 0.95472 0.97877 0.97799 0.86690 0.79762 0.84134 0.78938 1.19614 1.20193 1.19466 1.19422 0.79231 0.96579 1.47744 0.86443 1.42139 1.07446 1.05919 1.67417 1.19893 0.88220 0.84745 0.83787 1.90563 1.69059 1.31019 1.53122 1.21415 0.94127 0.83665 0.99267 0.89631 1.22697 0.97798 0.99242 0.96721 1.22761 0.97799 0.94369 1.01893 1.22454 0.95230 0.97887 0.87312 1.48002 1.52381 1.11594 1.21293 1.20022 0.79713 0.85748 0.81704 1.90692 1.38063 1.79409 1.31027 1.21861 0.96308 0.93234 1.01306 1.22423 0.93204 0.99005 1.00599 1.22499 0.98612 0.97629 0.97331 1.22352 0.94808 1.01078 0.97842 1.22156 0.97978 0.99131 0.96506 0.91693 0.79806 0.89723 0.89619 0.89748 0.90528 0.90059 0.91444 0.88713 0.91194 0.90879 0.91350 0.91533 0.91682 0.91610 0.91538 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.53 13.96 55.50 0.77 -25.76 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.84 27.74 -169.99 -4.71 15.12 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.44 6.52 56.52 0.37 -5.08 16 7 C -0.30 -8.87 10.16 -14.93 -0.15 -9.03 16 8 H 0.12 3.98 7.39 -52.49 -0.39 3.59 16 9 N -0.59 -14.76 5.03 -10.96 -0.06 -14.81 16 10 C 0.45 10.94 6.62 -10.99 -0.07 10.87 16 11 O -0.56 -16.10 14.62 -8.65 -0.13 -16.23 16 12 C 0.12 2.22 3.26 -68.08 -0.22 2.00 16 13 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 14 C -0.13 -1.68 6.41 -24.86 -0.16 -1.84 16 15 C -0.13 -1.27 7.08 -24.58 -0.17 -1.44 16 16 C 0.09 1.09 6.61 -2.56 -0.02 1.08 16 17 N -0.60 -9.94 2.84 -164.33 -0.47 -10.41 16 18 C 0.54 9.91 6.21 -10.99 -0.07 9.84 16 19 O -0.52 -12.04 14.47 -8.64 -0.12 -12.16 16 20 C -0.11 -1.42 2.77 -90.66 -0.25 -1.67 16 21 C -0.11 -1.13 5.03 -25.07 -0.13 -1.25 16 22 C -0.12 -1.06 6.91 -24.74 -0.17 -1.23 16 23 C -0.12 -1.27 6.83 -25.10 -0.17 -1.44 16 24 C -0.12 -1.59 6.40 -25.64 -0.16 -1.76 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.37 8.08 5.75 -40.82 -0.23 7.85 16 27 H 0.08 1.24 7.85 -51.93 -0.41 0.83 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.72 4.97 -51.93 -0.26 0.46 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 35 H 0.07 0.56 6.58 -51.93 -0.34 0.22 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.52 6.39 -51.93 -0.33 1.19 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -36.99 323.82 -7.87 -44.85 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.19 Total: 9.33 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.84 Total: 5.19 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.25 Total: -50.98 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.25 Total: -28.39 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.71 Total: 15.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.99 -7.87 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334476814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.242 kcal (2) G-P(sol) polarization free energy of solvation -36.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds