Wall clock time and date at job start Tue Mar 31 2020 02:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86806 * 120.00172 * 2 1 4 4 H 1.48501 * 109.46694 * 269.99718 * 3 2 1 5 5 H 1.48502 * 109.46751 * 29.99445 * 3 2 1 6 6 H 1.48494 * 109.47248 * 149.99505 * 3 2 1 7 7 C 1.38952 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99769 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99953 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99662 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00447 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00078 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.87609 * 301.02334 * 12 10 9 14 14 C 1.54383 * 110.02815 * 62.07846 * 12 10 9 15 15 C 1.55158 * 102.91824 * 141.65044 * 14 12 10 16 16 C 1.54909 * 101.61642 * 324.54893 * 15 14 12 17 17 N 1.47016 * 109.88830 * 179.97438 * 12 10 9 18 18 C 1.34782 * 125.64850 * 61.44862 * 17 12 10 19 19 O 1.21276 * 119.99741 * 0.02562 * 18 17 12 20 20 C 1.50693 * 119.99974 * 180.02562 * 18 17 12 21 21 C 1.54267 * 110.03600 * 297.16975 * 20 18 17 22 22 C 1.54885 * 104.19624 * 217.10703 * 21 20 18 23 23 C 1.54884 * 102.75121 * 37.94160 * 22 21 20 24 24 C 1.53876 * 110.03166 * 180.02562 * 20 18 17 25 25 H 0.97000 * 120.00023 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00196 * 359.97438 * 9 7 2 27 27 H 1.08999 * 110.70275 * 23.30828 * 14 12 10 28 28 H 1.08993 * 110.75646 * 260.02054 * 14 12 10 29 29 H 1.09002 * 111.00366 * 206.45412 * 15 14 12 30 30 H 1.09002 * 111.00429 * 82.64474 * 15 14 12 31 31 H 1.09000 * 110.36449 * 155.82966 * 16 15 14 32 32 H 1.09002 * 110.36579 * 278.03887 * 16 15 14 33 33 H 1.09003 * 110.01736 * 58.61135 * 20 18 17 34 34 H 1.09002 * 110.48369 * 335.78823 * 21 20 18 35 35 H 1.08998 * 110.48442 * 98.42532 * 21 20 18 36 36 H 1.08997 * 110.75652 * 279.62276 * 22 21 20 37 37 H 1.09001 * 110.91288 * 156.33035 * 22 21 20 38 38 H 1.08996 * 110.49169 * 203.37626 * 23 22 21 39 39 H 1.09001 * 110.59823 * 80.78939 * 23 22 21 40 40 H 1.09000 * 110.03285 * 238.56925 * 24 20 18 41 41 H 1.08999 * 110.03036 * 359.95449 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0536 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5606 -2.3706 0.0011 13 1 5.9312 -1.8423 -0.8774 14 6 6.0894 -1.6915 1.2827 15 6 7.3224 -2.5582 1.6511 16 6 6.8482 -3.9710 1.2282 17 7 6.0607 -3.7531 0.0017 18 6 5.8356 -4.6703 -0.9600 19 8 5.1693 -4.3799 -1.9308 20 6 6.4118 -6.0565 -0.8288 21 6 7.9530 -5.9896 -0.8204 22 6 8.3921 -7.2464 -1.6119 23 6 7.3297 -7.3311 -2.7358 24 6 6.0160 -6.9093 -2.0469 25 1 -0.4850 0.8400 -0.0004 26 1 3.8648 -0.3633 0.0007 27 1 5.3416 -1.7282 2.0748 28 1 6.3877 -0.6629 1.0799 29 1 7.5227 -2.5175 2.7218 30 1 8.1992 -2.2531 1.0799 31 1 7.7048 -4.6122 1.0203 32 1 6.2259 -4.4113 2.0073 33 1 6.0528 -6.5246 0.0878 34 1 8.2982 -5.0843 -1.3198 35 1 8.3311 -6.0306 0.2011 36 1 8.3567 -8.1333 -0.9792 37 1 9.3890 -7.1131 -2.0320 38 1 7.2529 -8.3511 -3.1122 39 1 7.5731 -6.6438 -3.5461 40 1 5.4652 -7.7919 -1.7216 41 1 5.4064 -6.3207 -2.7325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334476814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:33 Heat of formation + Delta-G solvation = -101.327573 kcal Electronic energy + Delta-G solvation = -22890.649565 eV Core-core repulsion = 19575.899941 eV Total energy + Delta-G solvation = -3314.749624 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72631 -40.14190 -38.38081 -37.69739 -36.05348 -33.88758 -32.77068 -30.91561 -29.77975 -29.47505 -26.93521 -25.08032 -22.62927 -22.35437 -21.64394 -21.14332 -20.52116 -19.48776 -18.45613 -18.14749 -16.99461 -16.91079 -16.50818 -15.97232 -15.72857 -15.32234 -15.19015 -14.89344 -14.50286 -14.40486 -14.18820 -14.09194 -13.69671 -13.35917 -13.06506 -12.63349 -12.59438 -12.46165 -12.33411 -12.24854 -12.02894 -11.99929 -11.79238 -11.70210 -11.57245 -11.52230 -11.43038 -10.71976 -10.59573 -10.29915 -9.58210 -8.45832 -6.07567 1.25051 1.32749 1.41351 1.65778 1.89031 2.02823 2.19829 2.90113 3.08421 3.43004 3.59340 3.62477 3.70156 3.81162 3.99285 4.16456 4.22037 4.29513 4.44516 4.48853 4.56903 4.59097 4.65685 4.71996 4.86236 4.87590 4.91243 5.01051 5.08800 5.10157 5.20566 5.23950 5.27645 5.34144 5.43866 5.47566 5.52400 5.87751 6.51540 6.60986 6.81878 7.25866 7.34194 7.90341 8.72429 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.004758 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.290874 B = 5883.996976 C = 6555.261290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.224 1.224 7 C -0.331 4.331 8 H 0.046 0.954 9 N -0.586 5.586 10 C 0.442 3.558 11 O -0.615 6.615 12 C 0.123 3.877 13 H 0.094 0.906 14 C -0.123 4.123 15 C -0.112 4.112 16 C 0.083 3.917 17 N -0.601 5.601 18 C 0.524 3.476 19 O -0.585 6.585 20 C -0.102 4.102 21 C -0.107 4.107 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.127 4.127 25 H 0.280 0.720 26 H 0.389 0.611 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.270 -6.436 4.102 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.147 1.147 7 C -0.461 4.461 8 H 0.064 0.936 9 N -0.228 5.228 10 C 0.229 3.771 11 O -0.499 6.499 12 C 0.015 3.985 13 H 0.112 0.888 14 C -0.161 4.161 15 C -0.149 4.149 16 C -0.038 4.038 17 N -0.334 5.334 18 C 0.314 3.686 19 O -0.465 6.465 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.165 4.165 25 H 0.090 0.910 26 H 0.225 0.775 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 25.300 -6.962 3.541 26.478 hybrid contribution -1.388 0.925 -0.401 1.715 sum 23.912 -6.037 3.140 24.861 Atomic orbital electron populations 1.69808 1.08234 1.29391 1.50090 1.26173 0.96538 1.02831 0.95774 0.85371 0.79869 0.76361 0.79988 1.18522 1.19272 1.14655 1.18959 0.81493 0.94786 1.50819 0.93568 1.41932 1.05735 1.07278 1.67823 1.21307 0.91302 0.83518 0.81012 1.90527 1.71277 1.33103 1.54969 1.21530 0.88766 0.85699 1.02548 0.88825 1.22782 0.98907 1.01242 0.93214 1.22823 0.96576 0.91250 1.04280 1.22866 0.95606 1.00403 0.84948 1.48286 1.51954 1.10825 1.22372 1.21056 0.78811 0.87618 0.81069 1.90655 1.41042 1.80892 1.33869 1.21962 0.99153 0.89890 1.01361 1.22452 0.89649 0.99528 1.02768 1.22499 0.98589 0.97604 0.96375 1.22343 0.93683 1.01557 0.98204 1.22184 0.99368 0.98707 0.96244 0.91007 0.77500 0.91458 0.86415 0.86559 0.87850 0.86509 0.92106 0.87839 0.91783 0.87630 0.89547 0.89479 0.90103 0.92664 0.90951 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.68 13.96 21.66 0.30 -58.38 16 2 C -0.01 -0.86 5.50 84.93 0.47 -0.39 16 3 Si 0.97 40.15 27.74 68.60 1.90 42.05 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.22 -7.62 6.52 99.48 0.65 -6.97 16 7 C -0.33 -20.81 10.16 84.04 0.85 -19.96 16 8 H 0.05 3.48 7.39 -2.91 -0.02 3.45 16 9 N -0.59 -30.17 5.03 -306.98 -1.54 -31.72 16 10 C 0.44 22.48 6.62 87.66 0.58 23.06 16 11 O -0.61 -38.37 14.62 10.50 0.15 -38.22 16 12 C 0.12 4.34 3.26 44.62 0.15 4.48 16 13 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 14 C -0.12 -2.85 6.41 31.80 0.20 -2.65 16 15 C -0.11 -1.58 7.08 31.99 0.23 -1.35 16 16 C 0.08 1.64 6.61 86.86 0.57 2.22 16 17 N -0.60 -19.62 2.84 -792.22 -2.25 -21.87 16 18 C 0.52 19.87 6.21 87.65 0.54 20.41 16 19 O -0.59 -29.38 14.47 10.56 0.15 -29.22 16 20 C -0.10 -2.70 2.77 -10.82 -0.03 -2.73 16 21 C -0.11 -1.74 5.03 31.67 0.16 -1.58 16 22 C -0.11 -1.53 6.91 31.88 0.22 -1.31 16 23 C -0.12 -2.35 6.83 31.65 0.22 -2.13 16 24 C -0.13 -3.51 6.40 31.30 0.20 -3.31 16 25 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 26 H 0.39 16.51 5.75 -92.71 -0.53 15.98 16 27 H 0.07 1.82 7.85 -2.39 -0.02 1.80 16 28 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.12 1.48 4.97 -2.39 -0.01 1.47 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 1.16 7.85 -2.39 -0.02 1.14 16 35 H 0.11 1.05 6.58 -2.39 -0.02 1.04 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.73 6.39 -2.39 -0.02 1.71 16 Total: -1.00 -94.22 323.82 3.52 -90.70 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.44 Total: 31.90 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 4.36 Total: 14.76 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -3.49 Total: -111.96 kcal Atomic # 8 Polarization: -67.75 SS G_CDS: 0.31 Total: -67.45 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.90 Total: 42.05 kcal Total: -94.22 3.52 -90.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334476814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.627 kcal (2) G-P(sol) polarization free energy of solvation -94.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds