Wall clock time and date at job start Tue Mar 31 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48500 * 109.46982 * 239.99709 * 3 2 1 5 5 H 1.48497 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46872 * 120.00174 * 3 2 1 7 7 C 1.38940 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00057 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00394 * 359.72169 * 7 2 1 10 10 C 1.34771 * 120.00645 * 180.27528 * 9 7 2 11 11 O 1.21298 * 119.99684 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00703 * 179.97438 * 10 9 7 13 13 H 1.09007 * 110.32107 * 28.52133 * 12 10 9 14 14 C 1.54902 * 110.36999 * 266.28721 * 12 10 9 15 15 C 1.55153 * 101.58636 * 204.14699 * 14 12 10 16 16 C 1.54332 * 102.93841 * 35.50020 * 15 14 12 17 17 N 1.47019 * 107.27184 * 337.81002 * 16 15 14 18 18 C 1.34777 * 125.64803 * 178.97623 * 17 16 15 19 19 O 1.21281 * 120.00010 * 184.48072 * 18 17 16 20 20 C 1.50699 * 119.99875 * 4.48220 * 18 17 16 21 21 C 1.54267 * 110.03235 * 297.16328 * 20 18 17 22 22 C 1.54886 * 104.19654 * 217.10593 * 21 20 18 23 23 C 1.54888 * 102.74566 * 37.94628 * 22 21 20 24 24 C 1.53876 * 110.03011 * 179.97438 * 20 18 17 25 25 H 0.97003 * 120.00086 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00055 * 0.27822 * 9 7 2 27 27 H 1.09001 * 111.00770 * 322.22480 * 14 12 10 28 28 H 1.09000 * 111.00802 * 86.03169 * 14 12 10 29 29 H 1.09004 * 110.72566 * 153.86233 * 15 14 12 30 30 H 1.08996 * 110.72140 * 276.96428 * 15 14 12 31 31 H 1.08998 * 109.87921 * 97.22913 * 16 15 14 32 32 H 1.08995 * 109.88322 * 218.38749 * 16 15 14 33 33 H 1.08998 * 110.01848 * 58.60858 * 20 18 17 34 34 H 1.08993 * 110.48610 * 335.78857 * 21 20 18 35 35 H 1.08999 * 110.48153 * 98.42802 * 21 20 18 36 36 H 1.09002 * 110.75958 * 279.63288 * 22 21 20 37 37 H 1.08999 * 110.75531 * 156.25856 * 22 21 20 38 38 H 1.09006 * 110.48491 * 203.38114 * 23 22 21 39 39 H 1.09000 * 110.48969 * 80.74006 * 23 22 21 40 40 H 1.08999 * 110.03567 * 238.56798 * 24 20 18 41 41 H 1.09005 * 110.03450 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 0.0047 10 6 1.9972 -3.5578 0.0098 11 8 3.2102 -3.5578 0.0102 12 6 1.2438 -4.8629 0.0161 13 1 0.2764 -4.7440 -0.4721 14 6 1.0563 -5.3702 1.4677 15 6 0.8786 -6.8952 1.2443 16 6 1.8249 -7.1835 0.0597 17 7 2.0325 -5.9140 -0.6521 18 6 2.8140 -5.7401 -1.7363 19 8 2.9760 -4.6291 -2.1951 20 6 3.4863 -6.9260 -2.3786 21 6 4.4741 -7.5746 -1.3869 22 6 5.6670 -8.0141 -2.2716 23 6 5.7804 -6.8551 -3.2928 24 6 4.3164 -6.4686 -3.5908 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 0.0047 27 1 1.9404 -5.1641 2.0709 28 1 0.1661 -4.9350 1.9218 29 1 1.1867 -7.4531 2.1286 30 1 -0.1534 -7.1290 0.9827 31 1 2.7779 -7.5611 0.4300 32 1 1.3694 -7.9135 -0.6095 33 1 2.7385 -7.6544 -2.6921 34 1 4.7988 -6.8482 -0.6420 35 1 4.0179 -8.4391 -0.9046 36 1 5.4471 -8.9544 -2.7773 37 1 6.5778 -8.0970 -1.6786 38 1 6.2776 -7.1946 -4.2015 39 1 6.3162 -6.0125 -2.8557 40 1 3.9721 -6.9758 -4.4921 41 1 4.2333 -5.3888 -3.7143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334476815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:37 Heat of formation + Delta-G solvation = -80.076428 kcal Electronic energy + Delta-G solvation = -23016.432045 eV Core-core repulsion = 19702.603940 eV Total energy + Delta-G solvation = -3313.828106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24477 -38.32061 -36.81385 -36.33041 -33.73705 -31.62530 -31.03796 -29.54198 -28.69748 -28.33891 -25.01041 -23.68321 -21.35425 -21.10998 -20.72305 -19.43518 -18.28272 -17.60706 -16.95747 -16.62738 -15.40311 -15.34743 -14.79352 -14.56238 -14.17395 -13.74377 -13.51523 -13.44239 -13.19760 -13.02091 -12.89562 -12.33618 -11.91914 -11.57462 -11.40438 -11.32719 -11.22046 -11.16786 -11.01245 -10.96187 -10.88635 -10.72582 -10.62184 -10.39197 -10.35080 -10.09577 -9.39595 -9.06587 -8.53282 -7.93043 -7.80648 -6.29175 -3.68180 3.15225 3.25732 3.32347 3.33531 3.39260 4.05196 4.27849 4.52459 4.61996 4.66874 4.74531 4.92316 4.97924 5.11274 5.27649 5.37895 5.39176 5.49264 5.50448 5.55366 5.59737 5.69627 5.71464 5.76656 5.81708 5.85597 5.93636 6.03769 6.05467 6.10839 6.24927 6.32143 6.37110 6.40364 6.52586 6.75403 7.67346 7.97820 8.18554 8.70935 8.81741 9.32099 9.67927 10.21476 10.89064 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.005288 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.294123 B = 5293.891638 C = 6322.649328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.020 3.980 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.289 4.289 8 H 0.100 0.900 9 N -0.563 5.563 10 C 0.453 3.547 11 O -0.571 6.571 12 C 0.123 3.877 13 H 0.079 0.921 14 C -0.119 4.119 15 C -0.131 4.131 16 C 0.103 3.897 17 N -0.605 5.605 18 C 0.528 3.472 19 O -0.497 6.497 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.120 4.120 25 H 0.270 0.730 26 H 0.390 0.610 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 -18.633 -0.785 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.419 4.419 8 H 0.118 0.882 9 N -0.200 5.200 10 C 0.237 3.763 11 O -0.453 6.453 12 C 0.016 3.984 13 H 0.097 0.903 14 C -0.158 4.158 15 C -0.169 4.169 16 C -0.021 4.021 17 N -0.341 5.341 18 C 0.316 3.684 19 O -0.370 6.370 20 C -0.126 4.126 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.161 4.161 24 C -0.157 4.157 25 H 0.080 0.920 26 H 0.223 0.777 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.841 -17.823 -1.140 18.084 hybrid contribution -0.360 0.784 0.039 0.864 sum 2.481 -17.039 -1.101 17.253 Atomic orbital electron populations 1.69608 1.05846 1.27974 1.51391 1.25206 0.95613 0.99509 0.97723 0.85945 0.78751 0.80683 0.78984 1.19992 1.21037 1.20045 1.19609 0.93223 0.82223 1.46814 0.88224 1.41758 1.08912 1.04464 1.64819 1.19554 0.88305 0.84357 0.84071 1.90514 1.13641 1.86706 1.54480 1.21733 0.94287 0.89244 0.93134 0.90349 1.22707 1.03382 0.94559 0.95134 1.22633 0.99684 0.96785 0.97756 1.22035 0.99513 0.86632 0.93872 1.48131 1.47726 1.09034 1.29223 1.20097 0.78183 0.90611 0.79554 1.90788 1.59055 1.25356 1.61761 1.21858 0.98166 0.95803 0.96755 1.22396 0.95305 0.99950 0.97587 1.22492 0.97977 0.98197 0.97344 1.22362 0.96791 0.98222 0.98720 1.22176 0.93937 1.03995 0.95639 0.92028 0.77706 0.90059 0.89499 0.90093 0.90542 0.91415 0.91805 0.89187 0.90718 0.91213 0.91565 0.91553 0.91822 0.91364 0.91825 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.73 13.05 55.50 0.72 -25.00 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.29 -8.57 9.68 -14.94 -0.14 -8.72 16 8 H 0.10 3.13 7.16 -52.49 -0.38 2.75 16 9 N -0.56 -15.28 5.29 -10.97 -0.06 -15.34 16 10 C 0.45 11.51 5.69 -10.99 -0.06 11.45 16 11 O -0.57 -16.67 14.33 -16.91 -0.24 -16.91 16 12 C 0.12 2.34 3.56 -67.57 -0.24 2.10 16 13 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.12 -1.75 6.49 -24.59 -0.16 -1.91 16 15 C -0.13 -1.37 6.95 -24.89 -0.17 -1.54 16 16 C 0.10 1.21 5.93 -3.06 -0.02 1.20 16 17 N -0.60 -10.43 3.12 -164.35 -0.51 -10.94 16 18 C 0.53 10.14 6.50 -10.99 -0.07 10.07 16 19 O -0.50 -12.34 12.86 -16.90 -0.22 -12.56 16 20 C -0.10 -1.45 2.82 -90.65 -0.26 -1.71 16 21 C -0.11 -1.37 4.80 -25.07 -0.12 -1.49 16 22 C -0.12 -1.27 6.91 -24.74 -0.17 -1.44 16 23 C -0.12 -1.49 6.83 -25.05 -0.17 -1.66 16 24 C -0.12 -1.67 6.40 -25.59 -0.16 -1.84 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.39 10.10 7.90 -40.82 -0.32 9.78 16 27 H 0.08 1.32 8.05 -51.93 -0.42 0.91 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.74 6.32 -51.93 -0.33 0.41 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 35 H 0.07 0.66 7.17 -51.93 -0.37 0.28 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.62 6.39 -51.93 -0.33 1.29 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -36.04 326.28 -8.60 -44.64 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.34 Total: 9.02 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -1.85 Total: 4.99 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.15 Total: -51.29 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.46 Total: -29.47 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.04 -8.60 -44.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334476815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.436 kcal (2) G-P(sol) polarization free energy of solvation -36.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds