Wall clock time and date at job start Tue Mar 31 2020 02:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48500 * 109.46982 * 239.99709 * 3 2 1 5 5 H 1.48497 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46872 * 120.00174 * 3 2 1 7 7 C 1.38940 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00057 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00394 * 359.72169 * 7 2 1 10 10 C 1.34771 * 120.00645 * 180.27528 * 9 7 2 11 11 O 1.21298 * 119.99684 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00703 * 179.97438 * 10 9 7 13 13 H 1.09007 * 110.32107 * 28.52133 * 12 10 9 14 14 C 1.54902 * 110.36999 * 266.28721 * 12 10 9 15 15 C 1.55153 * 101.58636 * 204.14699 * 14 12 10 16 16 C 1.54332 * 102.93841 * 35.50020 * 15 14 12 17 17 N 1.47019 * 107.27184 * 337.81002 * 16 15 14 18 18 C 1.34777 * 125.64803 * 178.97623 * 17 16 15 19 19 O 1.21281 * 120.00010 * 184.48072 * 18 17 16 20 20 C 1.50699 * 119.99875 * 4.48220 * 18 17 16 21 21 C 1.54267 * 110.03235 * 297.16328 * 20 18 17 22 22 C 1.54886 * 104.19654 * 217.10593 * 21 20 18 23 23 C 1.54888 * 102.74566 * 37.94628 * 22 21 20 24 24 C 1.53876 * 110.03011 * 179.97438 * 20 18 17 25 25 H 0.97003 * 120.00086 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00055 * 0.27822 * 9 7 2 27 27 H 1.09001 * 111.00770 * 322.22480 * 14 12 10 28 28 H 1.09000 * 111.00802 * 86.03169 * 14 12 10 29 29 H 1.09004 * 110.72566 * 153.86233 * 15 14 12 30 30 H 1.08996 * 110.72140 * 276.96428 * 15 14 12 31 31 H 1.08998 * 109.87921 * 97.22913 * 16 15 14 32 32 H 1.08995 * 109.88322 * 218.38749 * 16 15 14 33 33 H 1.08998 * 110.01848 * 58.60858 * 20 18 17 34 34 H 1.08993 * 110.48610 * 335.78857 * 21 20 18 35 35 H 1.08999 * 110.48153 * 98.42802 * 21 20 18 36 36 H 1.09002 * 110.75958 * 279.63288 * 22 21 20 37 37 H 1.08999 * 110.75531 * 156.25856 * 22 21 20 38 38 H 1.09006 * 110.48491 * 203.38114 * 23 22 21 39 39 H 1.09000 * 110.48969 * 80.74006 * 23 22 21 40 40 H 1.08999 * 110.03567 * 238.56798 * 24 20 18 41 41 H 1.09005 * 110.03450 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 0.0047 10 6 1.9972 -3.5578 0.0098 11 8 3.2102 -3.5578 0.0102 12 6 1.2438 -4.8629 0.0161 13 1 0.2764 -4.7440 -0.4721 14 6 1.0563 -5.3702 1.4677 15 6 0.8786 -6.8952 1.2443 16 6 1.8249 -7.1835 0.0597 17 7 2.0325 -5.9140 -0.6521 18 6 2.8140 -5.7401 -1.7363 19 8 2.9760 -4.6291 -2.1951 20 6 3.4863 -6.9260 -2.3786 21 6 4.4741 -7.5746 -1.3869 22 6 5.6670 -8.0141 -2.2716 23 6 5.7804 -6.8551 -3.2928 24 6 4.3164 -6.4686 -3.5908 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 0.0047 27 1 1.9404 -5.1641 2.0709 28 1 0.1661 -4.9350 1.9218 29 1 1.1867 -7.4531 2.1286 30 1 -0.1534 -7.1290 0.9827 31 1 2.7779 -7.5611 0.4300 32 1 1.3694 -7.9135 -0.6095 33 1 2.7385 -7.6544 -2.6921 34 1 4.7988 -6.8482 -0.6420 35 1 4.0179 -8.4391 -0.9046 36 1 5.4471 -8.9544 -2.7773 37 1 6.5778 -8.0970 -1.6786 38 1 6.2776 -7.1946 -4.2015 39 1 6.3162 -6.0125 -2.8557 40 1 3.9721 -6.9758 -4.4921 41 1 4.2333 -5.3888 -3.7143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334476815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:36 Heat of formation + Delta-G solvation = -105.259198 kcal Electronic energy + Delta-G solvation = -23017.524052 eV Core-core repulsion = 19702.603940 eV Total energy + Delta-G solvation = -3314.920112 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65533 -39.90845 -38.34593 -37.65929 -35.92297 -33.35433 -32.74728 -30.79692 -29.75122 -29.44207 -27.01064 -25.05619 -22.77613 -22.22228 -21.68914 -20.93517 -20.13925 -19.35346 -18.38565 -18.10724 -16.85844 -16.70717 -16.37264 -15.89601 -15.68215 -15.61437 -15.30505 -14.62966 -14.39733 -14.21677 -14.12820 -14.04169 -13.53755 -13.21187 -13.01105 -12.69833 -12.48225 -12.46598 -12.29953 -12.20216 -12.15184 -12.03807 -11.85102 -11.67425 -11.59958 -11.51220 -11.43949 -10.59704 -10.37744 -10.01109 -9.50626 -8.48296 -5.96457 1.34169 1.35039 1.46714 1.75315 1.90393 2.21959 2.29170 3.12128 3.19393 3.49506 3.62862 3.68759 3.73126 3.85618 4.08115 4.22300 4.26405 4.39826 4.44907 4.49580 4.54962 4.57773 4.65537 4.76740 4.83162 4.91233 4.91437 4.98016 5.06026 5.11262 5.19582 5.24388 5.27566 5.34688 5.37297 5.46381 5.49215 5.97360 6.57075 6.66704 7.11374 7.37484 7.54666 8.13558 8.69489 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.005288 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.294123 B = 5293.891638 C = 6322.649328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.279 1.279 5 H -0.263 1.263 6 H -0.269 1.269 7 C -0.330 4.330 8 H 0.067 0.933 9 N -0.575 5.575 10 C 0.447 3.553 11 O -0.617 6.617 12 C 0.120 3.880 13 H 0.089 0.911 14 C -0.116 4.116 15 C -0.113 4.113 16 C 0.091 3.909 17 N -0.607 5.607 18 C 0.512 3.488 19 O -0.574 6.574 20 C -0.096 4.096 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.126 4.126 24 C -0.124 4.124 25 H 0.278 0.722 26 H 0.393 0.607 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.036 0.964 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.090 0.910 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 -21.961 -0.322 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.205 1.205 5 H -0.187 1.187 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.085 0.915 9 N -0.212 5.212 10 C 0.234 3.766 11 O -0.502 6.502 12 C 0.013 3.987 13 H 0.106 0.894 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.030 4.030 17 N -0.342 5.342 18 C 0.302 3.698 19 O -0.452 6.452 20 C -0.117 4.117 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.163 4.163 24 C -0.162 4.162 25 H 0.087 0.913 26 H 0.227 0.773 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.055 0.945 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.109 0.891 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.806 -21.212 -0.637 21.298 hybrid contribution -0.057 1.816 -0.114 1.821 sum 1.749 -19.396 -0.752 19.489 Atomic orbital electron populations 1.69663 1.06656 1.29271 1.50654 1.26002 0.96638 1.02192 0.96397 0.85023 0.77863 0.76833 0.78745 1.20505 1.18667 1.19423 1.19498 0.92225 0.84303 1.49910 0.91460 1.41832 1.08941 1.04682 1.65753 1.20770 0.88225 0.86100 0.81472 1.90468 1.16063 1.87804 1.55878 1.21788 0.93675 0.86545 0.96736 0.89355 1.22723 1.03028 0.98272 0.91468 1.22689 1.01064 0.92894 0.98397 1.22499 1.01043 0.84630 0.94789 1.48399 1.46581 1.10527 1.28673 1.21219 0.77762 0.91254 0.79593 1.90756 1.61721 1.28573 1.64119 1.21970 0.98988 0.94161 0.96603 1.22405 0.95649 1.00048 0.96671 1.22498 0.97602 0.98359 0.96469 1.22380 0.95335 0.98222 1.00385 1.22201 0.95641 1.01161 0.97213 0.91256 0.77312 0.92396 0.87972 0.86994 0.87873 0.90243 0.87936 0.85344 0.94529 0.87324 0.88247 0.90769 0.89478 0.94552 0.89133 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.00 13.05 21.66 0.28 -52.72 16 2 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 3 Si 0.99 46.55 29.55 68.60 2.03 48.58 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.33 -20.75 9.68 84.04 0.81 -19.93 16 8 H 0.07 4.58 7.16 -2.91 -0.02 4.56 16 9 N -0.57 -33.09 5.29 -306.99 -1.62 -34.71 16 10 C 0.45 24.16 5.69 87.66 0.50 24.66 16 11 O -0.62 -38.83 14.33 18.38 0.26 -38.57 16 12 C 0.12 4.62 3.56 44.72 0.16 4.78 16 13 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 14 C -0.12 -3.26 6.49 31.98 0.21 -3.05 16 15 C -0.11 -1.87 6.95 31.78 0.22 -1.64 16 16 C 0.09 1.80 5.93 86.73 0.51 2.32 16 17 N -0.61 -20.61 3.12 -792.27 -2.47 -23.08 16 18 C 0.51 20.22 6.50 87.66 0.57 20.79 16 19 O -0.57 -30.80 12.86 18.44 0.24 -30.57 16 20 C -0.10 -2.54 2.82 -10.81 -0.03 -2.57 16 21 C -0.11 -2.37 4.80 31.67 0.15 -2.21 16 22 C -0.11 -1.98 6.91 31.88 0.22 -1.76 16 23 C -0.13 -2.98 6.83 31.69 0.22 -2.76 16 24 C -0.12 -3.49 6.40 31.34 0.20 -3.29 16 25 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 26 H 0.39 21.41 7.90 -92.71 -0.73 20.67 16 27 H 0.06 1.89 8.05 -2.39 -0.02 1.87 16 28 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.41 6.32 -2.39 -0.02 1.40 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.04 1.07 7.85 -2.39 -0.02 1.05 16 35 H 0.11 1.49 7.17 -2.39 -0.02 1.47 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.62 6.39 -2.38 -0.02 1.60 16 Total: -1.00 -88.49 326.28 3.23 -85.26 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.30 Total: 30.79 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 4.21 Total: 15.02 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -3.81 Total: -110.51 kcal Atomic # 8 Polarization: -69.63 SS G_CDS: 0.50 Total: -69.13 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -88.49 3.23 -85.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334476815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.995 kcal (2) G-P(sol) polarization free energy of solvation -88.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds