Wall clock time and date at job start Tue Mar 31 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99861 * 2 1 4 4 H 1.48506 * 109.46760 * 239.99408 * 3 2 1 5 5 H 1.48498 * 109.47555 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47681 * 119.99787 * 3 2 1 7 7 C 1.37876 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99595 * 0.02562 * 7 2 1 10 10 N 1.46510 * 109.46734 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99506 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00312 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99272 * 180.02562 * 11 10 9 14 14 C 1.47211 * 135.97872 * 359.97438 * 13 11 10 15 15 C 1.52905 * 87.79002 * 153.55153 * 14 13 11 16 16 C 1.53653 * 115.26479 * 270.41417 * 15 14 13 17 17 C 1.55482 * 101.97119 * 206.81790 * 16 15 14 18 18 C 1.55017 * 101.04308 * 33.48260 * 17 16 15 19 19 O 1.42394 * 116.20486 * 141.80010 * 15 14 13 20 20 C 1.47218 * 135.97006 * 180.02562 * 13 11 10 21 21 H 1.08996 * 113.50002 * 321.24851 * 20 13 11 22 22 C 1.52999 * 113.49635 * 91.72224 * 20 13 11 23 23 C 1.53002 * 117.49968 * 279.48799 * 22 20 13 24 24 C 1.53000 * 60.02940 * 107.50530 * 23 22 20 25 25 H 0.97001 * 119.99563 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47146 * 60.00166 * 9 7 2 27 27 H 1.08997 * 109.47286 * 299.99678 * 9 7 2 28 28 H 0.96996 * 119.99629 * 359.97438 * 10 9 7 29 29 H 1.08999 * 113.50312 * 268.28149 * 14 13 11 30 30 H 1.09005 * 113.49230 * 38.75588 * 14 13 11 31 31 H 1.09001 * 110.93077 * 324.98900 * 16 15 14 32 32 H 1.08999 * 110.93531 * 88.64618 * 16 15 14 33 33 H 1.09002 * 111.10924 * 275.54066 * 17 16 15 34 34 H 1.09001 * 111.14407 * 151.43695 * 17 16 15 35 35 H 1.09005 * 110.30246 * 205.04745 * 18 17 16 36 36 H 1.08996 * 110.38446 * 82.94629 * 18 17 16 37 37 H 1.08999 * 115.55899 * 133.80605 * 22 20 13 38 38 H 1.09002 * 117.49918 * 0.02562 * 23 22 20 39 39 H 1.09002 * 117.49754 * 215.00713 * 23 22 20 40 40 H 1.09008 * 117.49673 * 107.47884 * 24 23 22 41 41 H 1.08999 * 117.49942 * 252.47315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5584 -5.1055 0.0000 13 7 2.6296 -5.9077 0.0005 14 6 4.0951 -6.0474 0.0012 15 6 3.9063 -7.4036 0.6818 16 6 3.8735 -7.3676 2.2176 17 6 4.3755 -8.7928 2.5843 18 6 5.3766 -9.0607 1.4315 19 8 4.7909 -8.4414 0.2721 20 6 2.5398 -7.3771 -0.0002 21 1 1.7345 -7.7637 0.6244 22 6 2.5462 -7.9880 -1.4030 23 6 1.2290 -7.9837 -2.1814 24 6 2.3607 -7.0380 -2.5888 25 1 -0.4849 0.8401 -0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 3.1567 -3.4354 0.0002 29 1 4.5254 -6.1187 -0.9977 30 1 4.6014 -5.3125 0.6271 31 1 4.5500 -6.6051 2.6037 32 1 2.8589 -7.2064 2.5819 33 1 3.5575 -9.5131 2.5691 34 1 4.8798 -8.7955 3.5506 35 1 5.4902 -10.1329 1.2708 36 1 6.3427 -8.6080 1.6547 37 1 3.2097 -8.8417 -1.5411 38 1 0.3580 -7.5453 -1.6943 39 1 1.0258 -8.8348 -2.8314 40 1 2.9022 -7.2672 -3.5067 41 1 2.2339 -5.9778 -2.3700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334703048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:08 Heat of formation + Delta-G solvation = -6.661546 kcal Electronic energy + Delta-G solvation = -22640.215384 eV Core-core repulsion = 19329.570786 eV Total energy + Delta-G solvation = -3310.644597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33463 -38.74937 -37.38885 -35.50532 -34.08897 -32.33786 -32.24029 -29.65235 -27.23974 -26.41333 -25.62213 -22.59349 -22.35236 -22.02472 -20.95688 -20.35134 -18.73599 -17.60071 -16.91798 -16.32836 -15.92304 -15.73649 -15.30303 -14.91895 -14.63307 -14.14189 -13.85598 -13.76317 -13.31841 -13.26881 -12.74716 -12.13285 -11.96365 -11.90826 -11.84507 -11.65582 -11.53771 -11.33489 -11.16782 -10.98813 -10.95821 -10.86217 -10.29833 -10.21812 -10.07505 -9.44340 -9.38551 -9.33600 -8.72187 -8.46258 -7.73674 -6.14402 -4.21089 2.87050 3.26455 3.31286 3.33034 3.53602 3.88806 4.00208 4.17670 4.26319 4.34304 4.35014 4.68274 4.81504 4.89749 5.01773 5.09557 5.17756 5.21575 5.33203 5.37226 5.42025 5.48644 5.53257 5.61198 5.72352 5.75834 5.79790 5.83469 5.89512 5.96838 6.07603 6.38716 6.39769 6.85637 7.25496 7.51404 7.57190 7.63962 7.95223 8.08667 8.77292 8.91457 9.33777 9.49043 10.95801 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.004262 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.900382 B = 6567.387454 C = 7224.400955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.725 5.725 11 C 0.729 3.271 12 O -0.592 6.592 13 N -0.657 5.657 14 C 0.100 3.900 15 C 0.080 3.920 16 C -0.124 4.124 17 C -0.156 4.156 18 C 0.049 3.951 19 O -0.353 6.353 20 C 0.183 3.817 21 H 0.088 0.912 22 C -0.155 4.155 23 C -0.174 4.174 24 C -0.168 4.168 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.783 -18.553 2.238 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.148 3.852 10 N -0.376 5.376 11 C 0.432 3.568 12 O -0.471 6.471 13 N -0.400 5.400 14 C -0.025 4.025 15 C 0.039 3.961 16 C -0.162 4.162 17 C -0.193 4.193 18 C -0.028 4.028 19 O -0.270 6.270 20 C 0.077 3.923 21 H 0.106 0.894 22 C -0.174 4.174 23 C -0.211 4.211 24 C -0.205 4.205 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.218 0.782 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.557 -18.369 2.038 21.285 hybrid contribution 0.876 1.129 0.092 1.432 sum 11.433 -17.240 2.130 20.796 Atomic orbital electron populations 1.69973 1.06086 1.27380 1.48848 1.24935 0.94906 0.99356 0.94744 0.86470 0.79402 0.82327 0.78660 1.20084 1.21058 1.20100 1.21172 0.93202 0.90396 1.53257 0.92047 1.18996 0.87714 0.80934 0.97600 1.45692 1.10876 1.03964 1.77104 1.15390 0.83621 0.79814 0.78013 1.90886 1.13403 1.83564 1.59237 1.48519 1.06353 1.05452 1.79676 1.23198 0.83143 0.95018 1.01107 1.23066 0.90670 0.88422 0.93983 1.22717 1.03709 0.97442 0.92333 1.23307 0.99610 0.97044 0.99378 1.23469 0.96060 0.98292 0.84968 1.88334 1.59696 1.49010 1.30009 1.21885 0.96056 0.79790 0.94564 0.89431 1.22387 1.01252 1.02227 0.91538 1.22966 0.92988 1.01834 1.03318 1.22902 1.02390 0.97635 0.97574 0.92401 0.95734 0.95743 0.78197 0.89478 0.90519 0.89682 0.89296 0.90186 0.89773 0.89646 0.91917 0.86255 0.88340 0.89129 0.89202 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 10 N -0.72 -16.15 5.55 -66.41 -0.37 -16.52 16 11 C 0.73 15.76 8.08 -86.92 -0.70 15.06 16 12 O -0.59 -15.29 17.12 5.29 0.09 -15.20 16 13 N -0.66 -10.77 2.38 -182.81 -0.43 -11.21 16 14 C 0.10 1.27 7.38 -7.96 -0.06 1.21 16 15 C 0.08 0.91 1.64 -90.46 -0.15 0.76 16 16 C -0.12 -1.22 6.33 -25.07 -0.16 -1.38 16 17 C -0.16 -1.14 7.16 -24.35 -0.17 -1.32 16 18 C 0.05 0.37 7.79 38.22 0.30 0.67 16 19 O -0.35 -3.80 10.08 -35.23 -0.36 -4.15 16 20 C 0.18 2.55 4.17 -71.93 -0.30 2.25 16 21 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 22 C -0.15 -2.02 5.24 -90.58 -0.47 -2.49 16 23 C -0.17 -2.40 10.25 -26.73 -0.27 -2.67 16 24 C -0.17 -2.39 9.58 -26.70 -0.26 -2.64 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.39 7.57 8.03 -40.82 -0.33 7.24 16 29 H 0.09 1.09 7.81 -51.93 -0.41 0.68 16 30 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.12 1.42 7.45 -51.93 -0.39 1.03 16 38 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 41 H 0.10 1.67 6.66 -51.93 -0.35 1.33 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -32.62 338.25 -9.42 -42.04 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.47 Total: 6.37 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -2.69 Total: 3.19 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.07 Total: -53.35 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.26 Total: -19.35 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.62 -9.42 -42.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334703048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.381 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds