Wall clock time and date at job start Tue Mar 31 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99861 * 2 1 4 4 H 1.48506 * 109.46760 * 239.99408 * 3 2 1 5 5 H 1.48498 * 109.47555 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47681 * 119.99787 * 3 2 1 7 7 C 1.37876 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99595 * 0.02562 * 7 2 1 10 10 N 1.46510 * 109.46734 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99506 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00312 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99272 * 180.02562 * 11 10 9 14 14 C 1.47211 * 135.97872 * 359.97438 * 13 11 10 15 15 C 1.52905 * 87.79002 * 153.55153 * 14 13 11 16 16 C 1.53653 * 115.26479 * 270.41417 * 15 14 13 17 17 C 1.55482 * 101.97119 * 206.81790 * 16 15 14 18 18 C 1.55017 * 101.04308 * 33.48260 * 17 16 15 19 19 O 1.42394 * 116.20486 * 141.80010 * 15 14 13 20 20 C 1.47218 * 135.97006 * 180.02562 * 13 11 10 21 21 H 1.08996 * 113.50002 * 321.24851 * 20 13 11 22 22 C 1.52999 * 113.49635 * 91.72224 * 20 13 11 23 23 C 1.53002 * 117.49968 * 279.48799 * 22 20 13 24 24 C 1.53000 * 60.02940 * 107.50530 * 23 22 20 25 25 H 0.97001 * 119.99563 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47146 * 60.00166 * 9 7 2 27 27 H 1.08997 * 109.47286 * 299.99678 * 9 7 2 28 28 H 0.96996 * 119.99629 * 359.97438 * 10 9 7 29 29 H 1.08999 * 113.50312 * 268.28149 * 14 13 11 30 30 H 1.09005 * 113.49230 * 38.75588 * 14 13 11 31 31 H 1.09001 * 110.93077 * 324.98900 * 16 15 14 32 32 H 1.08999 * 110.93531 * 88.64618 * 16 15 14 33 33 H 1.09002 * 111.10924 * 275.54066 * 17 16 15 34 34 H 1.09001 * 111.14407 * 151.43695 * 17 16 15 35 35 H 1.09005 * 110.30246 * 205.04745 * 18 17 16 36 36 H 1.08996 * 110.38446 * 82.94629 * 18 17 16 37 37 H 1.08999 * 115.55899 * 133.80605 * 22 20 13 38 38 H 1.09002 * 117.49918 * 0.02562 * 23 22 20 39 39 H 1.09002 * 117.49754 * 215.00713 * 23 22 20 40 40 H 1.09008 * 117.49673 * 107.47884 * 24 23 22 41 41 H 1.08999 * 117.49942 * 252.47315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5584 -5.1055 0.0000 13 7 2.6296 -5.9077 0.0005 14 6 4.0951 -6.0474 0.0012 15 6 3.9063 -7.4036 0.6818 16 6 3.8735 -7.3676 2.2176 17 6 4.3755 -8.7928 2.5843 18 6 5.3766 -9.0607 1.4315 19 8 4.7909 -8.4414 0.2721 20 6 2.5398 -7.3771 -0.0002 21 1 1.7345 -7.7637 0.6244 22 6 2.5462 -7.9880 -1.4030 23 6 1.2290 -7.9837 -2.1814 24 6 2.3607 -7.0380 -2.5888 25 1 -0.4849 0.8401 -0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 3.1567 -3.4354 0.0002 29 1 4.5254 -6.1187 -0.9977 30 1 4.6014 -5.3125 0.6271 31 1 4.5500 -6.6051 2.6037 32 1 2.8589 -7.2064 2.5819 33 1 3.5575 -9.5131 2.5691 34 1 4.8798 -8.7955 3.5506 35 1 5.4902 -10.1329 1.2708 36 1 6.3427 -8.6080 1.6547 37 1 3.2097 -8.8417 -1.5411 38 1 0.3580 -7.5453 -1.6943 39 1 1.0258 -8.8348 -2.8314 40 1 2.9022 -7.2672 -3.5067 41 1 2.2339 -5.9778 -2.3700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334703048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:08 Heat of formation + Delta-G solvation = -28.566706 kcal Electronic energy + Delta-G solvation = -22641.165263 eV Core-core repulsion = 19329.570786 eV Total energy + Delta-G solvation = -3311.594476 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.45880 -40.19785 -38.60438 -36.67794 -36.13183 -34.34587 -33.03061 -31.04488 -28.95539 -27.62689 -26.78225 -24.55729 -23.37653 -22.93009 -22.03881 -21.73851 -20.29684 -18.98436 -18.14569 -17.82237 -17.36640 -16.97556 -16.63027 -16.48076 -15.88675 -15.63825 -15.17493 -14.91257 -14.69105 -14.43351 -14.05359 -13.97524 -13.83255 -13.13057 -12.89609 -12.74553 -12.69497 -12.65673 -12.52607 -12.32481 -12.24101 -12.03911 -11.76786 -11.52455 -11.37847 -11.16186 -11.10999 -10.81091 -10.31885 -10.13235 -9.50553 -8.29688 -6.46892 1.39027 1.45814 1.47159 1.56115 2.12929 2.37105 2.74449 2.86676 3.05048 3.05582 3.22679 3.40467 3.63554 3.87591 3.95879 4.04342 4.14541 4.21090 4.33728 4.46537 4.52227 4.56307 4.67906 4.71185 4.72804 4.80641 4.86857 4.93448 4.98882 5.06312 5.09607 5.20512 5.22633 5.24781 5.27684 5.46108 5.67813 5.82353 6.05270 6.37150 6.64625 7.14011 7.23155 7.66146 8.82572 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.004262 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.900382 B = 6567.387454 C = 7224.400955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.289 3.711 10 N -0.719 5.719 11 C 0.728 3.272 12 O -0.644 6.644 13 N -0.655 5.655 14 C 0.096 3.904 15 C 0.102 3.898 16 C -0.130 4.130 17 C -0.147 4.147 18 C 0.043 3.957 19 O -0.361 6.361 20 C 0.169 3.831 21 H 0.075 0.925 22 C -0.137 4.137 23 C -0.178 4.178 24 C -0.173 4.173 25 H 0.269 0.731 26 H -0.017 1.017 27 H -0.014 1.014 28 H 0.401 0.599 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.062 0.938 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.370 -19.484 2.530 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.594 4.594 8 H 0.100 0.900 9 C 0.166 3.834 10 N -0.372 5.372 11 C 0.431 3.569 12 O -0.527 6.527 13 N -0.395 5.395 14 C -0.027 4.027 15 C 0.061 3.939 16 C -0.167 4.167 17 C -0.184 4.184 18 C -0.032 4.032 19 O -0.278 6.278 20 C 0.064 3.936 21 H 0.093 0.907 22 C -0.156 4.156 23 C -0.215 4.215 24 C -0.211 4.211 25 H 0.078 0.922 26 H 0.001 0.999 27 H 0.004 0.996 28 H 0.236 0.764 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.231 -19.370 2.335 24.149 hybrid contribution -0.247 1.280 0.005 1.304 sum 13.984 -18.089 2.340 22.984 Atomic orbital electron populations 1.70145 1.08313 1.28701 1.49739 1.26072 0.95779 1.03865 0.93707 0.85173 0.77891 0.76412 0.79516 1.18706 1.20948 1.18530 1.21525 0.94200 0.90359 1.53278 0.89978 1.18416 0.87972 0.83187 0.93843 1.45265 1.10808 1.03467 1.77676 1.15434 0.83547 0.80367 0.77558 1.90837 1.16096 1.84464 1.61303 1.48333 1.07927 1.05534 1.77718 1.23482 0.80395 0.96531 1.02297 1.22720 0.88804 0.87878 0.94546 1.22770 1.03160 0.99753 0.91051 1.23305 0.99678 0.94994 1.00456 1.23737 0.96336 0.99347 0.83823 1.88318 1.59302 1.48536 1.31665 1.22239 0.97739 0.77964 0.95651 0.90740 1.22433 1.00779 1.02121 0.90303 1.22956 0.92030 1.02537 1.04017 1.22846 1.03287 0.95682 0.99248 0.92170 0.99885 0.99641 0.76382 0.88586 0.88882 0.88615 0.91089 0.90133 0.87597 0.87723 0.90444 0.83778 0.91878 0.86206 0.86667 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.99 42.81 29.54 68.60 2.03 44.83 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.56 -31.09 9.28 25.60 0.24 -30.85 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.29 16.67 5.43 85.63 0.46 17.13 16 10 N -0.72 -33.38 5.55 -482.28 -2.68 -36.06 16 11 C 0.73 33.17 8.08 179.05 1.45 34.62 16 12 O -0.64 -35.78 17.12 -3.99 -0.07 -35.85 16 13 N -0.65 -21.87 2.38 -851.51 -2.03 -23.90 16 14 C 0.10 2.30 7.38 83.45 0.62 2.91 16 15 C 0.10 2.14 1.64 -10.69 -0.02 2.13 16 16 C -0.13 -2.30 6.33 31.67 0.20 -2.10 16 17 C -0.15 -1.69 7.16 32.14 0.23 -1.46 16 18 C 0.04 0.49 7.79 72.67 0.57 1.06 16 19 O -0.36 -6.54 10.08 -148.98 -1.50 -8.05 16 20 C 0.17 4.68 4.17 42.01 0.17 4.85 16 21 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 22 C -0.14 -3.43 5.24 -10.77 -0.06 -3.49 16 23 C -0.18 -4.93 10.25 30.60 0.31 -4.62 16 24 C -0.17 -4.89 9.58 30.62 0.29 -4.59 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 26 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 27 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.40 15.84 8.03 -92.71 -0.74 15.09 16 29 H 0.10 2.19 7.81 -2.39 -0.02 2.18 16 30 H 0.09 1.96 8.07 -2.38 -0.02 1.94 16 31 H 0.10 1.51 8.07 -2.39 -0.02 1.49 16 32 H 0.07 1.53 7.88 -2.39 -0.02 1.52 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.14 2.97 7.45 -2.39 -0.02 2.95 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 41 H 0.06 2.13 6.66 -2.39 -0.02 2.12 16 Total: -1.00 -75.41 338.25 1.25 -74.16 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.28 Total: 25.33 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 4.93 Total: 16.36 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -4.42 Total: -116.79 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.57 Total: -43.90 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.41 1.25 -74.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334703048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.595 kcal (2) G-P(sol) polarization free energy of solvation -75.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds