Wall clock time and date at job start Tue Mar 31 2020 02:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00001 * 2 1 4 4 H 1.48496 * 109.46935 * 89.99887 * 3 2 1 5 5 H 1.48503 * 109.46842 * 209.99836 * 3 2 1 6 6 H 1.48495 * 109.46955 * 330.00205 * 3 2 1 7 7 C 1.37881 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99605 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99999 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47127 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99973 * 179.97438 * 10 9 7 12 12 O 1.21582 * 120.00248 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99632 * 179.97438 * 11 10 9 14 14 C 1.47210 * 135.97693 * 354.52359 * 13 11 10 15 15 C 1.52998 * 87.68546 * 153.59677 * 14 13 11 16 16 C 1.53662 * 115.47835 * 270.59813 * 15 14 13 17 17 C 1.55486 * 101.96331 * 206.89640 * 16 15 14 18 18 C 1.55019 * 101.04791 * 33.48960 * 17 16 15 19 19 O 1.42397 * 116.01102 * 141.96244 * 15 14 13 20 20 C 1.47212 * 135.97002 * 174.89070 * 13 11 10 21 21 H 1.09000 * 113.49652 * 91.66423 * 20 13 11 22 22 C 1.52996 * 113.50233 * 321.18712 * 20 13 11 23 23 C 1.53001 * 117.49866 * 134.99596 * 22 20 13 24 24 C 1.53006 * 117.49886 * 66.33609 * 22 20 13 25 25 H 0.96998 * 120.00066 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47265 * 300.00135 * 9 7 2 27 27 H 1.09006 * 109.47346 * 59.99996 * 9 7 2 28 28 H 0.97005 * 119.99969 * 359.97438 * 10 9 7 29 29 H 1.08997 * 113.49732 * 268.27016 * 14 13 11 30 30 H 1.09000 * 113.49858 * 38.80641 * 14 13 11 31 31 H 1.08996 * 110.93209 * 325.06909 * 16 15 14 32 32 H 1.08997 * 110.92652 * 88.73402 * 16 15 14 33 33 H 1.09001 * 111.11055 * 275.54209 * 17 16 15 34 34 H 1.09003 * 111.13968 * 151.44416 * 17 16 15 35 35 H 1.08994 * 110.30155 * 205.04419 * 18 17 16 36 36 H 1.09001 * 110.38092 * 82.93914 * 18 17 16 37 37 H 1.09000 * 115.55051 * 280.67008 * 22 20 13 38 38 H 1.08999 * 117.50042 * 359.97438 * 23 22 20 39 39 H 1.09002 * 117.50011 * 145.02555 * 23 22 20 40 40 H 1.09000 * 117.50415 * 214.98223 * 24 22 20 41 41 H 1.08999 * 117.49586 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 5.3249 -2.8215 0.0009 12 8 6.1150 -1.8975 0.0014 13 7 5.7741 -4.0923 0.0013 14 6 5.1668 -5.4296 0.0995 15 6 6.3722 -5.9659 -0.6752 16 6 6.2274 -5.9672 -2.2050 17 6 7.1762 -7.1279 -2.6175 18 6 7.0062 -8.0920 -1.4156 19 8 6.8616 -7.2389 -0.2657 20 6 7.0877 -4.7505 -0.0897 21 1 7.5466 -4.9408 0.8805 22 6 8.0430 -4.0725 -1.0737 23 6 9.4870 -3.8520 -0.6183 24 6 8.5291 -2.6632 -0.7292 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 -0.8888 27 1 3.8745 -0.6800 0.8912 28 1 3.3695 -3.3126 0.0010 29 1 5.1048 -5.8049 1.1210 30 1 4.2249 -5.5200 -0.4416 31 1 5.1998 -6.1811 -2.4987 32 1 6.5631 -5.0206 -2.6286 33 1 8.2066 -6.7820 -2.7005 34 1 6.8456 -7.5950 -3.5452 35 1 7.8883 -8.7234 -1.3095 36 1 6.1153 -8.7066 -1.5450 37 1 7.8769 -4.3044 -2.1257 38 1 9.7562 -4.1897 0.3825 39 1 10.2708 -3.9385 -1.3708 40 1 8.6831 -1.9680 -1.5545 41 1 8.1678 -2.2190 0.1983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334703051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:15 Heat of formation + Delta-G solvation = -19.855230 kcal Electronic energy + Delta-G solvation = -22725.432093 eV Core-core repulsion = 19414.215374 eV Total energy + Delta-G solvation = -3311.216719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.38479 -40.16701 -38.35660 -37.08449 -36.05968 -34.36417 -33.09836 -31.16888 -29.34027 -27.65593 -26.73232 -24.00082 -23.20758 -22.96141 -22.05284 -21.70595 -20.29031 -19.25525 -18.48491 -17.59071 -17.22514 -17.01510 -16.84629 -16.40822 -15.79593 -15.58685 -15.26289 -14.82771 -14.66191 -14.56192 -14.32332 -14.09353 -13.75375 -13.40543 -13.04618 -12.75789 -12.70812 -12.59767 -12.39171 -12.17846 -12.06480 -11.92483 -11.66905 -11.53655 -11.40215 -11.11952 -10.92346 -10.81850 -10.30093 -10.11209 -9.51456 -8.40436 -6.47299 1.32576 1.33908 1.43963 1.48392 2.17210 2.28204 2.78450 2.89313 2.95351 3.12706 3.23430 3.49994 3.62601 3.80652 4.03715 4.10754 4.14632 4.16630 4.32642 4.41507 4.49224 4.55730 4.64043 4.75943 4.79949 4.81722 4.86278 4.88336 4.96488 5.03789 5.05442 5.11032 5.25500 5.25903 5.28013 5.37422 5.59068 6.04756 6.07967 6.36615 6.55112 7.12286 7.19240 7.68666 8.74440 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.004489 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.525434 B = 6236.598552 C = 7005.099909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.029 3.971 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.261 1.261 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.256 3.744 10 N -0.721 5.721 11 C 0.729 3.271 12 O -0.619 6.619 13 N -0.659 5.659 14 C 0.089 3.911 15 C 0.097 3.903 16 C -0.133 4.133 17 C -0.145 4.145 18 C 0.043 3.957 19 O -0.370 6.370 20 C 0.177 3.823 21 H 0.089 0.911 22 C -0.172 4.172 23 C -0.153 4.153 24 C -0.166 4.166 25 H 0.273 0.727 26 H 0.011 0.989 27 H 0.008 0.992 28 H 0.400 0.600 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.185 -17.694 -5.166 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.172 4.172 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.132 3.868 10 N -0.374 5.374 11 C 0.432 3.568 12 O -0.500 6.500 13 N -0.400 5.400 14 C -0.034 4.034 15 C 0.056 3.944 16 C -0.170 4.170 17 C -0.183 4.183 18 C -0.032 4.032 19 O -0.288 6.288 20 C 0.073 3.927 21 H 0.107 0.893 22 C -0.190 4.190 23 C -0.190 4.190 24 C -0.204 4.204 25 H 0.082 0.918 26 H 0.029 0.971 27 H 0.026 0.974 28 H 0.234 0.766 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.524 -16.733 -4.950 24.730 hybrid contribution -0.660 0.848 0.170 1.088 sum 16.864 -15.885 -4.779 23.655 Atomic orbital electron populations 1.69974 1.07664 1.28643 1.50676 1.25559 0.95523 1.02573 0.93500 0.85852 0.79266 0.79284 0.79445 1.19065 1.18489 1.19637 1.21251 0.89858 0.94521 1.52733 0.92527 1.18927 0.92988 0.79467 0.95418 1.45102 1.04395 1.09757 1.78188 1.15344 0.82611 0.81214 0.77679 1.90818 1.55541 1.43289 1.60385 1.48334 1.11400 1.02598 1.77687 1.23485 0.98461 0.79464 1.02019 1.22905 0.92764 0.83623 0.95151 1.22858 1.02100 1.00986 0.91052 1.23298 1.00423 0.94919 0.99619 1.23724 1.02898 0.92877 0.83747 1.88315 1.85337 1.22213 1.32941 1.22363 0.84087 0.88236 0.98017 0.89341 1.22604 0.96281 1.00280 0.99873 1.23103 0.91539 1.01171 1.03205 1.22785 1.03497 0.90895 1.03182 0.91794 0.97105 0.97444 0.76606 0.88679 0.88955 0.89117 0.89849 0.89757 0.87674 0.87872 0.90688 0.86230 0.88411 0.86720 0.90053 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.96 21.45 0.30 -55.83 16 2 C 0.03 1.65 5.47 84.66 0.46 2.12 16 3 Si 0.94 44.82 27.47 68.60 1.88 46.70 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.55 -30.86 9.83 25.60 0.25 -30.61 16 8 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 9 C 0.26 13.08 4.50 85.63 0.38 13.46 16 10 N -0.72 -31.25 5.55 -482.29 -2.68 -33.93 16 11 C 0.73 30.09 8.67 179.05 1.55 31.64 16 12 O -0.62 -29.39 13.30 -3.97 -0.05 -29.44 16 13 N -0.66 -20.75 3.51 -852.29 -2.99 -23.75 16 14 C 0.09 2.11 7.85 83.48 0.66 2.77 16 15 C 0.10 2.02 1.70 -10.67 -0.02 2.00 16 16 C -0.13 -2.27 5.81 31.67 0.18 -2.09 16 17 C -0.15 -1.63 7.16 32.14 0.23 -1.40 16 18 C 0.04 0.53 7.79 72.67 0.57 1.10 16 19 O -0.37 -7.21 11.17 -148.98 -1.66 -8.87 16 20 C 0.18 4.59 4.02 41.99 0.17 4.76 16 21 H 0.09 2.34 8.07 -2.39 -0.02 2.32 16 22 C -0.17 -4.28 5.20 -10.79 -0.06 -4.33 16 23 C -0.15 -3.22 10.22 30.62 0.31 -2.91 16 24 C -0.17 -4.96 8.48 30.62 0.26 -4.70 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 26 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 27 H 0.01 0.41 7.57 -2.38 -0.02 0.39 16 28 H 0.40 15.66 8.04 -92.70 -0.75 14.91 16 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 31 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 32 H 0.08 1.66 5.50 -2.39 -0.01 1.65 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.12 2.70 5.49 -2.39 -0.01 2.69 16 38 H 0.10 1.94 8.13 -2.39 -0.02 1.92 16 39 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.08 2.96 6.35 -2.39 -0.02 2.95 16 Total: -1.00 -69.95 328.08 -0.01 -69.96 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.24 Total: 23.37 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 4.95 Total: 11.79 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -5.37 Total: -113.51 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.72 Total: -38.32 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -69.95 -0.01 -69.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334703051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.108 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds