Wall clock time and date at job start Tue Mar 31 2020 02:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86811 * 119.99759 * 2 1 4 4 H 1.48498 * 109.46996 * 245.18649 * 3 2 1 5 5 H 1.48497 * 109.46960 * 5.18762 * 3 2 1 6 6 H 1.48496 * 109.46754 * 125.18681 * 3 2 1 7 7 C 1.38954 * 120.00744 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99415 * 21.48772 * 7 2 1 9 9 N 1.37089 * 120.00455 * 201.22831 * 7 2 1 10 10 C 1.34774 * 120.00415 * 54.47502 * 9 7 2 11 11 O 1.21292 * 120.00249 * 174.78774 * 10 9 7 12 12 C 1.50699 * 120.00064 * 354.78317 * 10 9 7 13 13 H 1.08999 * 109.60151 * 309.25800 * 12 10 9 14 14 C 1.53347 * 109.60565 * 188.92498 * 12 10 9 15 15 C 1.53076 * 108.42338 * 172.71554 * 14 12 10 16 16 C 1.50173 * 109.89107 * 48.90124 * 15 14 12 17 17 O 1.21276 * 118.24720 * 162.39529 * 16 15 14 18 18 N 1.33353 * 123.50981 * 342.41670 * 16 15 14 19 19 C 1.45818 * 124.16893 * 2.04423 * 18 16 15 20 20 C 1.46503 * 119.99855 * 234.47859 * 9 7 2 21 21 C 1.54269 * 110.03328 * 58.85591 * 20 9 7 22 22 C 1.54892 * 104.19583 * 217.10733 * 21 20 9 23 23 C 1.54889 * 102.74772 * 37.94204 * 22 21 20 24 24 C 1.53871 * 110.03220 * 301.68688 * 20 9 7 25 25 H 0.97001 * 120.00266 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.67428 * 292.45074 * 14 12 10 27 27 H 1.08997 * 109.66793 * 52.94759 * 14 12 10 28 28 H 1.08990 * 109.40026 * 169.03192 * 15 14 12 29 29 H 1.09003 * 109.39888 * 288.85672 * 15 14 12 30 30 H 0.97003 * 117.94687 * 182.22719 * 18 16 15 31 31 H 1.09000 * 109.46297 * 220.86305 * 19 18 16 32 32 H 1.08991 * 109.18126 * 101.46280 * 19 18 16 33 33 H 1.09002 * 110.01942 * 180.29416 * 20 9 7 34 34 H 1.09000 * 110.48345 * 335.77934 * 21 20 9 35 35 H 1.08996 * 110.48985 * 98.42344 * 21 20 9 36 36 H 1.08994 * 110.75430 * 279.62597 * 22 21 20 37 37 H 1.09000 * 110.75428 * 156.25315 * 22 21 20 38 38 H 1.08999 * 110.48440 * 203.37736 * 23 22 21 39 39 H 1.08997 * 110.49197 * 80.73810 * 23 22 21 40 40 H 1.08997 * 110.03636 * 238.56688 * 24 20 9 41 41 H 1.09006 * 110.03150 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.0044 1.7528 -1.2708 5 1 1.2880 2.7436 0.1266 6 1 3.1942 1.6431 1.1442 7 6 2.0090 -1.2033 -0.0005 8 1 1.5253 -2.1060 -0.3436 9 7 3.3101 -1.2437 0.4293 10 6 3.6320 -0.7694 1.6491 11 8 4.7639 -0.8905 2.0676 12 6 2.5855 -0.0883 2.4929 13 1 2.0864 0.6821 1.9053 14 6 3.2487 0.5490 3.7199 15 6 2.1993 1.3839 4.4581 16 6 0.9492 0.5753 4.6550 17 8 0.1495 0.9481 5.4870 18 7 0.6717 -0.5311 3.9641 19 6 1.5587 -1.1179 2.9666 20 6 4.3508 -1.8025 -0.4373 21 6 4.4084 -1.0204 -1.7658 22 6 4.7058 -2.1039 -2.8319 23 6 3.8719 -3.3107 -2.3346 24 6 4.0098 -3.2587 -0.7989 25 1 -0.4850 0.8400 0.0004 26 1 3.6270 -0.2317 4.3796 27 1 4.0705 1.1901 3.4011 28 1 2.5930 1.6840 5.4291 29 1 1.9656 2.2725 3.8717 30 1 -0.1753 -0.9725 4.1339 31 1 0.9713 -1.4593 2.1142 32 1 2.0784 -1.9692 3.4061 33 1 5.3174 -1.7589 0.0645 34 1 3.4510 -0.5397 -1.9673 35 1 5.2092 -0.2814 -1.7391 36 1 5.7678 -2.3486 -2.8481 37 1 4.3678 -1.7803 -3.8163 38 1 4.2813 -4.2432 -2.7230 39 1 2.8280 -3.2000 -2.6279 40 1 4.8113 -3.9218 -0.4734 41 1 3.0698 -3.5495 -0.3300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335656846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:23 Heat of formation + Delta-G solvation = -69.660352 kcal Electronic energy + Delta-G solvation = -23859.522195 eV Core-core repulsion = 20546.145764 eV Total energy + Delta-G solvation = -3313.376431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24604 -39.08913 -37.20187 -35.52722 -34.32374 -32.56959 -31.94675 -29.58584 -28.17359 -27.13195 -24.81079 -24.15057 -22.81836 -20.30690 -20.18652 -19.49008 -18.54453 -17.60253 -16.43378 -16.06229 -15.66725 -15.38442 -14.91869 -14.75576 -14.35317 -13.97939 -13.74518 -13.48867 -13.38977 -13.01448 -12.74649 -12.67998 -12.07614 -11.71783 -11.53208 -11.21121 -11.11023 -11.00533 -10.93527 -10.65712 -10.58391 -10.54396 -10.37211 -10.12864 -9.91448 -9.64227 -9.32906 -9.15109 -8.77477 -8.48327 -7.66665 -6.65561 -4.39122 2.92378 3.04539 3.07702 3.16384 3.49469 3.83153 3.94531 4.22030 4.68501 5.03567 5.14706 5.17150 5.17772 5.27118 5.39809 5.46270 5.77054 5.80497 5.89618 5.93732 6.05657 6.09729 6.11664 6.13858 6.18680 6.24413 6.31155 6.34251 6.36991 6.51515 6.61280 6.73716 6.75587 6.86426 6.96704 7.21401 7.53924 7.67715 7.80113 8.33028 8.62540 8.80600 9.12521 9.56749 10.42539 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.006984 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.473641 B = 4008.144619 C = 4278.652471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.080 3.920 3 Si 0.840 3.160 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.350 4.350 8 H 0.103 0.897 9 N -0.464 5.464 10 C 0.505 3.495 11 O -0.588 6.588 12 C -0.113 4.113 13 H 0.099 0.901 14 C -0.105 4.105 15 C -0.136 4.136 16 C 0.519 3.481 17 O -0.577 6.577 18 N -0.706 5.706 19 C 0.120 3.880 20 C 0.129 3.871 21 C -0.133 4.133 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.124 4.124 25 H 0.278 0.722 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.398 0.602 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.773 -2.282 -1.152 5.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.129 4.129 3 Si 0.665 3.335 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.477 4.477 8 H 0.120 0.880 9 N -0.185 5.185 10 C 0.293 3.707 11 O -0.471 6.471 12 C -0.134 4.134 13 H 0.117 0.883 14 C -0.143 4.143 15 C -0.176 4.176 16 C 0.306 3.694 17 O -0.459 6.459 18 N -0.356 5.356 19 C -0.004 4.004 20 C 0.025 3.975 21 C -0.171 4.171 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.163 4.163 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.233 0.767 31 H 0.141 0.859 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.951 -1.972 -0.599 5.362 hybrid contribution -0.029 0.900 -0.367 0.972 sum 4.922 -1.072 -0.966 5.129 Atomic orbital electron populations 1.69687 1.05991 1.28495 1.43931 1.25606 0.95042 0.97987 0.94229 0.87866 0.81179 0.84261 0.80199 1.19352 1.20690 1.17716 1.18781 0.84782 0.96048 1.48047 0.87997 1.43802 1.07724 1.55421 1.11590 1.20251 0.88181 0.80226 0.82040 1.90539 1.22531 1.61438 1.72618 1.21719 0.96146 0.99154 0.96398 0.88307 1.21514 0.97223 0.99584 0.96024 1.21663 0.93637 0.99180 1.03114 1.20123 0.88204 0.80998 0.80044 1.90691 1.49829 1.69577 1.35770 1.45466 1.22653 1.27158 1.40298 1.21476 0.92567 0.94099 0.92213 1.21706 0.92531 0.92418 0.90804 1.22724 1.02408 0.97471 0.94500 1.22402 0.99141 0.96042 0.98208 1.22270 1.00383 0.97109 0.95720 1.22360 1.01826 0.96367 0.95710 0.91158 0.90712 0.90489 0.88283 0.88790 0.76694 0.85935 0.92521 0.89938 0.89551 0.92928 0.92279 0.92162 0.92754 0.91320 0.92741 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.54 13.96 55.50 0.77 -19.77 16 2 C 0.08 1.85 3.63 -17.47 -0.06 1.79 16 3 Si 0.84 18.51 24.46 -169.99 -4.16 14.35 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.25 -5.49 5.19 56.52 0.29 -5.19 16 7 C -0.35 -7.77 5.82 -14.94 -0.09 -7.86 16 8 H 0.10 2.42 7.33 -52.49 -0.38 2.04 16 9 N -0.46 -9.83 1.83 -106.54 -0.19 -10.03 16 10 C 0.50 11.01 5.43 -10.99 -0.06 10.95 16 11 O -0.59 -13.79 15.38 5.55 0.09 -13.71 16 12 C -0.11 -2.26 0.80 -91.63 -0.07 -2.33 16 13 H 0.10 2.11 2.55 -51.93 -0.13 1.98 16 14 C -0.11 -1.87 4.61 -26.51 -0.12 -1.99 16 15 C -0.14 -2.24 6.03 -28.10 -0.17 -2.41 16 16 C 0.52 9.71 7.71 -11.87 -0.09 9.62 16 17 O -0.58 -12.34 17.78 5.56 0.10 -12.24 16 18 N -0.71 -12.44 5.45 -61.35 -0.33 -12.78 16 19 C 0.12 2.22 6.10 -4.45 -0.03 2.19 16 20 C 0.13 2.46 3.29 -66.81 -0.22 2.24 16 21 C -0.13 -2.36 6.41 -25.07 -0.16 -2.52 16 22 C -0.12 -1.74 6.91 -24.74 -0.17 -1.91 16 23 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 24 C -0.12 -2.06 6.26 -25.61 -0.16 -2.22 16 25 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 26 H 0.07 1.29 8.13 -51.93 -0.42 0.86 16 27 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16 28 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.40 6.45 8.80 -40.82 -0.36 6.09 16 31 H 0.12 2.48 5.93 -51.93 -0.31 2.17 16 32 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 33 H 0.08 1.64 6.95 -51.93 -0.36 1.28 16 34 H 0.09 1.74 6.38 -51.93 -0.33 1.40 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.36 6.86 -51.93 -0.36 1.00 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -26.55 310.61 -6.74 -33.30 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.12 Total: 12.53 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.58 Total: 3.66 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.25 Total: -42.57 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: 0.18 Total: -25.95 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -4.16 Total: 14.35 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.55 -6.74 -33.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335656846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.365 kcal (2) G-P(sol) polarization free energy of solvation -26.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds