Wall clock time and date at job start Tue Mar 31 2020 02:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86811 * 119.99759 * 2 1 4 4 H 1.48498 * 109.46996 * 245.18649 * 3 2 1 5 5 H 1.48497 * 109.46960 * 5.18762 * 3 2 1 6 6 H 1.48496 * 109.46754 * 125.18681 * 3 2 1 7 7 C 1.38954 * 120.00744 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99415 * 21.48772 * 7 2 1 9 9 N 1.37089 * 120.00455 * 201.22831 * 7 2 1 10 10 C 1.34774 * 120.00415 * 54.47502 * 9 7 2 11 11 O 1.21292 * 120.00249 * 174.78774 * 10 9 7 12 12 C 1.50699 * 120.00064 * 354.78317 * 10 9 7 13 13 H 1.08999 * 109.60151 * 309.25800 * 12 10 9 14 14 C 1.53347 * 109.60565 * 188.92498 * 12 10 9 15 15 C 1.53076 * 108.42338 * 172.71554 * 14 12 10 16 16 C 1.50173 * 109.89107 * 48.90124 * 15 14 12 17 17 O 1.21276 * 118.24720 * 162.39529 * 16 15 14 18 18 N 1.33353 * 123.50981 * 342.41670 * 16 15 14 19 19 C 1.45818 * 124.16893 * 2.04423 * 18 16 15 20 20 C 1.46503 * 119.99855 * 234.47859 * 9 7 2 21 21 C 1.54269 * 110.03328 * 58.85591 * 20 9 7 22 22 C 1.54892 * 104.19583 * 217.10733 * 21 20 9 23 23 C 1.54889 * 102.74772 * 37.94204 * 22 21 20 24 24 C 1.53871 * 110.03220 * 301.68688 * 20 9 7 25 25 H 0.97001 * 120.00266 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.67428 * 292.45074 * 14 12 10 27 27 H 1.08997 * 109.66793 * 52.94759 * 14 12 10 28 28 H 1.08990 * 109.40026 * 169.03192 * 15 14 12 29 29 H 1.09003 * 109.39888 * 288.85672 * 15 14 12 30 30 H 0.97003 * 117.94687 * 182.22719 * 18 16 15 31 31 H 1.09000 * 109.46297 * 220.86305 * 19 18 16 32 32 H 1.08991 * 109.18126 * 101.46280 * 19 18 16 33 33 H 1.09002 * 110.01942 * 180.29416 * 20 9 7 34 34 H 1.09000 * 110.48345 * 335.77934 * 21 20 9 35 35 H 1.08996 * 110.48985 * 98.42344 * 21 20 9 36 36 H 1.08994 * 110.75430 * 279.62597 * 22 21 20 37 37 H 1.09000 * 110.75428 * 156.25315 * 22 21 20 38 38 H 1.08999 * 110.48440 * 203.37736 * 23 22 21 39 39 H 1.08997 * 110.49197 * 80.73810 * 23 22 21 40 40 H 1.08997 * 110.03636 * 238.56688 * 24 20 9 41 41 H 1.09006 * 110.03150 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.0044 1.7528 -1.2708 5 1 1.2880 2.7436 0.1266 6 1 3.1942 1.6431 1.1442 7 6 2.0090 -1.2033 -0.0005 8 1 1.5253 -2.1060 -0.3436 9 7 3.3101 -1.2437 0.4293 10 6 3.6320 -0.7694 1.6491 11 8 4.7639 -0.8905 2.0676 12 6 2.5855 -0.0883 2.4929 13 1 2.0864 0.6821 1.9053 14 6 3.2487 0.5490 3.7199 15 6 2.1993 1.3839 4.4581 16 6 0.9492 0.5753 4.6550 17 8 0.1495 0.9481 5.4870 18 7 0.6717 -0.5311 3.9641 19 6 1.5587 -1.1179 2.9666 20 6 4.3508 -1.8025 -0.4373 21 6 4.4084 -1.0204 -1.7658 22 6 4.7058 -2.1039 -2.8319 23 6 3.8719 -3.3107 -2.3346 24 6 4.0098 -3.2587 -0.7989 25 1 -0.4850 0.8400 0.0004 26 1 3.6270 -0.2317 4.3796 27 1 4.0705 1.1901 3.4011 28 1 2.5930 1.6840 5.4291 29 1 1.9656 2.2725 3.8717 30 1 -0.1753 -0.9725 4.1339 31 1 0.9713 -1.4593 2.1142 32 1 2.0784 -1.9692 3.4061 33 1 5.3174 -1.7589 0.0645 34 1 3.4510 -0.5397 -1.9673 35 1 5.2092 -0.2814 -1.7391 36 1 5.7678 -2.3486 -2.8481 37 1 4.3678 -1.7803 -3.8163 38 1 4.2813 -4.2432 -2.7230 39 1 2.8280 -3.2000 -2.6279 40 1 4.8113 -3.9218 -0.4734 41 1 3.0698 -3.5495 -0.3300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335656846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:23 Heat of formation + Delta-G solvation = -86.296866 kcal Electronic energy + Delta-G solvation = -23860.243608 eV Core-core repulsion = 20546.145764 eV Total energy + Delta-G solvation = -3314.097844 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82802 -40.65400 -38.66940 -37.13802 -35.97770 -34.02886 -33.69458 -31.08724 -29.50062 -28.58614 -26.56481 -25.63547 -24.32412 -21.84838 -21.42605 -21.09710 -20.10682 -19.22219 -18.02203 -17.64329 -17.23267 -16.93427 -16.46738 -16.14048 -15.93522 -15.66424 -15.20935 -15.06766 -14.92603 -14.55736 -14.29087 -14.10732 -13.70156 -13.28948 -13.03412 -12.89338 -12.61669 -12.59889 -12.36938 -12.12058 -12.01297 -11.86194 -11.82715 -11.41650 -11.39161 -11.26908 -10.95245 -10.82411 -10.50363 -10.01532 -9.39275 -8.49726 -6.21870 1.13950 1.28836 1.35384 1.56717 1.79226 2.13733 2.35103 2.62588 2.88943 3.58886 3.72590 3.77021 3.83214 3.89031 3.92433 4.18563 4.29224 4.36562 4.41131 4.62730 4.68313 4.75609 4.76396 4.77136 4.79508 4.84262 4.92487 5.04880 5.11709 5.14885 5.21600 5.26819 5.40511 5.49162 5.60227 5.72890 5.78326 5.97417 6.32744 6.50422 6.99193 7.16122 7.36868 7.81608 8.60337 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.006984 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.473641 B = 4008.144619 C = 4278.652471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.064 3.936 3 Si 0.866 3.134 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.330 4.330 8 H 0.086 0.914 9 N -0.467 5.467 10 C 0.498 3.502 11 O -0.606 6.606 12 C -0.118 4.118 13 H 0.086 0.914 14 C -0.099 4.099 15 C -0.130 4.130 16 C 0.516 3.484 17 O -0.606 6.606 18 N -0.700 5.700 19 C 0.132 3.868 20 C 0.119 3.881 21 C -0.134 4.134 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.120 4.120 25 H 0.276 0.724 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.126 0.874 29 H 0.101 0.899 30 H 0.404 0.596 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 -2.673 -1.395 6.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.143 4.143 3 Si 0.692 3.308 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.457 4.457 8 H 0.103 0.897 9 N -0.188 5.188 10 C 0.287 3.713 11 O -0.491 6.491 12 C -0.139 4.139 13 H 0.104 0.896 14 C -0.137 4.137 15 C -0.170 4.170 16 C 0.304 3.696 17 O -0.489 6.489 18 N -0.349 5.349 19 C 0.008 3.992 20 C 0.016 3.984 21 C -0.173 4.173 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.159 4.159 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.144 0.856 29 H 0.119 0.881 30 H 0.240 0.760 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.160 -2.378 -0.863 6.659 hybrid contribution -0.377 0.960 -0.313 1.078 sum 5.783 -1.418 -1.176 6.070 Atomic orbital electron populations 1.69737 1.06708 1.28642 1.45615 1.25779 0.95088 0.99079 0.94309 0.87454 0.80576 0.82873 0.79922 1.19970 1.21008 1.17224 1.18505 0.85155 0.95186 1.46894 0.89691 1.43914 1.07804 1.55212 1.11885 1.20572 0.88325 0.80173 0.82257 1.90521 1.23258 1.62310 1.72983 1.21750 0.96094 0.99067 0.97029 0.89642 1.21479 0.97346 0.99801 0.95120 1.21693 0.92114 0.98645 1.04516 1.20515 0.88615 0.80960 0.79492 1.90682 1.50949 1.70245 1.37040 1.45418 1.22805 1.27046 1.39661 1.21268 0.92065 0.94059 0.91798 1.21936 0.91439 0.94134 0.90887 1.22701 1.01061 0.98397 0.95109 1.22396 1.00489 0.94411 0.97551 1.22244 0.99967 0.98655 0.94063 1.22324 1.01451 0.94842 0.97255 0.91326 0.90075 0.90488 0.85588 0.88098 0.75997 0.87777 0.91336 0.90774 0.92190 0.92766 0.90092 0.90841 0.89826 0.92614 0.90994 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.57 13.96 21.66 0.30 -42.27 16 2 C 0.06 2.97 3.63 84.93 0.31 3.27 16 3 Si 0.87 37.70 24.46 68.60 1.68 39.38 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.25 -10.52 5.19 99.48 0.52 -10.00 16 7 C -0.33 -14.74 5.82 84.04 0.49 -14.26 16 8 H 0.09 4.11 7.33 -2.91 -0.02 4.09 16 9 N -0.47 -19.66 1.83 -609.38 -1.11 -20.78 16 10 C 0.50 21.38 5.43 87.66 0.48 21.86 16 11 O -0.61 -27.88 15.38 -3.07 -0.05 -27.92 16 12 C -0.12 -4.61 0.80 -11.45 -0.01 -4.62 16 13 H 0.09 3.59 2.55 -2.39 -0.01 3.59 16 14 C -0.10 -3.35 4.61 30.74 0.14 -3.21 16 15 C -0.13 -4.01 6.03 29.71 0.18 -3.83 16 16 C 0.52 18.58 7.71 87.71 0.68 19.25 16 17 O -0.61 -25.20 17.78 -3.02 -0.05 -25.25 16 18 N -0.70 -24.02 5.45 -467.19 -2.55 -26.57 16 19 C 0.13 4.79 6.10 86.48 0.53 5.32 16 20 C 0.12 4.43 3.29 45.71 0.15 4.58 16 21 C -0.13 -4.63 6.41 31.67 0.20 -4.43 16 22 C -0.11 -2.91 6.91 31.89 0.22 -2.69 16 23 C -0.11 -3.00 6.83 31.67 0.22 -2.78 16 24 C -0.12 -3.81 6.26 31.32 0.20 -3.61 16 25 H 0.28 13.19 8.31 -92.71 -0.77 12.42 16 26 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16 27 H 0.08 2.61 8.04 -2.39 -0.02 2.59 16 28 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.40 12.83 8.80 -92.71 -0.82 12.01 16 31 H 0.10 4.22 5.93 -2.39 -0.01 4.20 16 32 H 0.07 2.32 8.11 -2.39 -0.02 2.30 16 33 H 0.07 2.88 6.95 -2.39 -0.02 2.87 16 34 H 0.06 2.39 6.38 -2.39 -0.02 2.37 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 2.05 6.86 -2.38 -0.02 2.03 16 Total: -1.00 -55.72 310.61 2.04 -53.68 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.04 Total: 34.87 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 3.78 Total: 14.86 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -3.36 Total: -89.61 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.10 Total: -53.17 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 1.68 Total: 39.38 kcal Total: -55.72 2.04 -53.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335656846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.614 kcal (2) G-P(sol) polarization free energy of solvation -55.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds