Wall clock time and date at job start Tue Mar 31 2020 02:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99801 * 2 1 4 4 H 1.48506 * 109.46960 * 269.99476 * 3 2 1 5 5 H 1.48503 * 109.47462 * 29.99501 * 3 2 1 6 6 H 1.48509 * 109.47272 * 149.99887 * 3 2 1 7 7 C 1.38948 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99736 * 164.49146 * 7 2 1 9 9 N 1.37103 * 120.00454 * 344.49457 * 7 2 1 10 10 C 1.34781 * 119.99514 * 306.51936 * 9 7 2 11 11 O 1.21288 * 119.99558 * 174.39486 * 10 9 7 12 12 C 1.50698 * 120.00010 * 354.39223 * 10 9 7 13 13 H 1.09003 * 109.29941 * 43.19057 * 12 10 9 14 14 C 1.52921 * 109.30172 * 283.60451 * 12 10 9 15 15 C 1.53345 * 108.67331 * 188.93513 * 14 12 10 16 16 C 1.53073 * 108.42542 * 67.53073 * 15 14 12 17 17 C 1.50175 * 109.89030 * 311.10029 * 16 15 14 18 18 O 1.21284 * 118.24665 * 197.55577 * 17 16 15 19 19 N 1.33351 * 123.50909 * 17.57769 * 17 16 15 20 20 C 1.46498 * 120.00033 * 126.51633 * 9 7 2 21 21 C 1.54883 * 110.59952 * 54.84347 * 20 9 7 22 22 C 1.54893 * 102.74648 * 203.32361 * 21 20 9 23 23 C 1.54267 * 104.19644 * 37.94171 * 22 21 20 24 24 C 1.53874 * 106.59789 * 336.39217 * 23 22 21 25 25 H 0.96998 * 120.00241 * 5.09621 * 1 2 3 26 26 H 1.09004 * 109.60189 * 308.68971 * 14 12 10 27 27 H 1.08994 * 109.60708 * 69.01853 * 14 12 10 28 28 H 1.08999 * 109.67872 * 187.26321 * 15 14 12 29 29 H 1.08999 * 109.67604 * 307.76184 * 15 14 12 30 30 H 1.08999 * 109.40273 * 71.22302 * 16 15 14 31 31 H 1.08997 * 109.40517 * 190.97060 * 16 15 14 32 32 H 0.97006 * 117.94909 * 177.77203 * 19 17 16 33 33 H 1.08998 * 110.43139 * 177.46037 * 20 9 7 34 34 H 1.08999 * 110.75815 * 85.00645 * 21 20 9 35 35 H 1.09000 * 110.75553 * 321.63530 * 21 20 9 36 36 H 1.09000 * 110.48159 * 279.26004 * 22 21 20 37 37 H 1.08996 * 110.48683 * 156.62449 * 22 21 20 38 38 H 1.08993 * 110.03051 * 95.67437 * 23 22 21 39 39 H 1.09001 * 110.02705 * 217.05702 * 23 22 21 40 40 H 1.08998 * 110.03245 * 119.28416 * 24 23 22 41 41 H 1.09005 * 110.03179 * 240.66627 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0594 -1.2204 -0.2495 9 7 1.3609 -2.3690 0.3185 10 6 0.6689 -2.4624 1.4713 11 8 0.0127 -3.4551 1.7059 12 6 0.7107 -1.3336 2.4688 13 1 0.6191 -0.3837 1.9420 14 6 2.0436 -1.3698 3.2176 15 6 1.9841 -0.3652 4.3746 16 6 0.9677 -0.8699 5.4019 17 6 -0.3112 -1.2486 4.7118 18 8 -1.3153 -1.3572 5.3832 19 7 -0.4017 -1.4724 3.4003 20 6 1.4205 -3.5128 -0.5949 21 6 2.8913 -3.8855 -0.9062 22 6 2.7766 -4.6263 -2.2616 23 6 1.6884 -3.8465 -3.0281 24 6 0.8262 -3.1385 -1.9684 25 1 -0.4850 0.8367 -0.0746 26 1 2.2146 -2.3717 3.6116 27 1 2.8523 -1.1011 2.5381 28 1 2.9663 -0.2829 4.8401 29 1 1.6735 0.6096 3.9987 30 1 1.3739 -1.7415 5.9151 31 1 0.7673 -0.0836 6.1296 32 1 -1.2618 -1.7447 3.0438 33 1 0.8923 -4.3666 -0.1705 34 1 3.2935 -4.5457 -0.1379 35 1 3.5039 -2.9895 -1.0064 36 1 2.4674 -5.6600 -2.1063 37 1 3.7240 -4.5873 -2.7991 38 1 2.1501 -3.1106 -3.6863 39 1 1.0756 -4.5351 -3.6100 40 1 0.8695 -2.0589 -2.1123 41 1 -0.2058 -3.4828 -2.0358 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335901115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:13 Heat of formation + Delta-G solvation = -84.795576 kcal Electronic energy + Delta-G solvation = -23636.000701 eV Core-core repulsion = 20321.967958 eV Total energy + Delta-G solvation = -3314.032743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00708 -38.72972 -36.93094 -35.40593 -34.35658 -32.45861 -31.57465 -29.31390 -28.04357 -27.04136 -25.17931 -24.19230 -22.20970 -20.14592 -20.06897 -19.39067 -18.52266 -17.11705 -16.44444 -15.98675 -15.44465 -15.26245 -14.81630 -14.59863 -14.38251 -13.71464 -13.52970 -13.38818 -13.19829 -12.81219 -12.73994 -12.55586 -11.81553 -11.62690 -11.36536 -11.24053 -11.07244 -10.88507 -10.70417 -10.66669 -10.60726 -10.55979 -10.47431 -10.43679 -9.95443 -9.69351 -9.37265 -9.14246 -8.76840 -7.91661 -7.38642 -6.59936 -4.41582 2.97606 3.09062 3.10462 3.19855 3.72124 3.96190 4.01593 4.61599 4.69792 5.09533 5.15343 5.19855 5.27042 5.30744 5.42941 5.46602 5.81013 5.92395 6.03078 6.06423 6.09356 6.12945 6.14092 6.19626 6.26146 6.32197 6.39324 6.43587 6.46712 6.56637 6.63612 6.84496 6.87859 6.98036 7.19736 7.29306 7.42312 7.83736 8.07098 8.47662 8.72826 8.81298 9.40722 9.84107 10.44773 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.007372 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.748639 B = 3797.378253 C = 4646.568489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.047 3.953 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.442 5.442 10 C 0.510 3.490 11 O -0.602 6.602 12 C 0.123 3.877 13 H 0.131 0.869 14 C -0.121 4.121 15 C -0.122 4.122 16 C -0.133 4.133 17 C 0.516 3.484 18 O -0.582 6.582 19 N -0.687 5.687 20 C 0.134 3.866 21 C -0.128 4.128 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.123 4.123 25 H 0.275 0.725 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.658 -0.149 -0.337 7.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.159 4.159 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.161 5.161 10 C 0.298 3.702 11 O -0.487 6.487 12 C 0.015 3.985 13 H 0.147 0.853 14 C -0.159 4.159 15 C -0.160 4.160 16 C -0.173 4.173 17 C 0.303 3.697 18 O -0.464 6.464 19 N -0.336 5.336 20 C 0.030 3.970 21 C -0.166 4.166 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.162 4.162 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.237 0.763 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.890 -0.491 0.224 6.911 hybrid contribution -0.002 0.828 -0.557 0.998 sum 6.888 0.337 -0.334 6.904 Atomic orbital electron populations 1.69925 1.06051 1.28598 1.44473 1.25639 0.95269 1.00135 0.94887 0.86306 0.80122 0.81715 0.79137 1.19931 1.20373 1.18634 1.19177 0.94068 0.82807 1.50579 0.89654 1.43210 1.47092 1.11464 1.14347 1.20304 0.80724 0.86687 0.82469 1.90535 1.45378 1.33859 1.78914 1.21287 0.85868 1.02132 0.89182 0.85261 1.21741 0.97425 0.99454 0.97302 1.21674 0.98949 0.99546 0.95821 1.21621 0.93615 1.03171 0.98916 1.20045 0.90734 0.76775 0.82139 1.90687 1.37485 1.54954 1.63299 1.45363 1.14303 1.67099 1.06842 1.21787 0.94444 0.90593 0.90182 1.22740 0.98122 0.99988 0.95750 1.22274 0.98328 0.98725 0.96574 1.22070 0.97127 0.98572 0.97959 1.22324 0.97569 1.02499 0.93791 0.91427 0.91835 0.88358 0.90735 0.91194 0.88719 0.88801 0.76298 0.90225 0.92663 0.90370 0.92350 0.92387 0.92377 0.92961 0.89493 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.43 11.61 55.50 0.64 -19.79 16 2 C 0.05 1.04 3.42 -17.47 -0.06 0.98 16 3 Si 0.90 17.19 29.58 -169.99 -5.03 12.16 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 7 C -0.34 -7.38 6.18 -14.93 -0.09 -7.47 16 8 H 0.09 1.80 6.74 -52.49 -0.35 1.45 16 9 N -0.44 -9.90 2.45 -105.98 -0.26 -10.16 16 10 C 0.51 12.09 6.17 -10.98 -0.07 12.02 16 11 O -0.60 -15.91 15.70 5.55 0.09 -15.83 16 12 C 0.12 2.58 2.60 -69.53 -0.18 2.39 16 13 H 0.13 2.89 4.25 -51.93 -0.22 2.67 16 14 C -0.12 -2.09 5.16 -26.59 -0.14 -2.23 16 15 C -0.12 -1.74 6.03 -26.51 -0.16 -1.90 16 16 C -0.13 -2.02 6.03 -28.10 -0.17 -2.18 16 17 C 0.52 10.35 7.71 -11.87 -0.09 10.25 16 18 O -0.58 -13.47 17.78 5.55 0.10 -13.37 16 19 N -0.69 -14.57 4.79 -55.99 -0.27 -14.84 16 20 C 0.13 2.75 3.24 -66.28 -0.21 2.54 16 21 C -0.13 -2.17 6.41 -24.74 -0.16 -2.33 16 22 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 23 C -0.12 -1.85 6.80 -25.61 -0.17 -2.02 16 24 C -0.12 -2.39 6.42 -25.61 -0.16 -2.55 16 25 H 0.28 6.35 8.32 -40.82 -0.34 6.01 16 26 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 27 H 0.10 1.67 7.32 -51.93 -0.38 1.29 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.40 9.11 8.40 -40.82 -0.34 8.77 16 33 H 0.08 1.77 7.00 -51.93 -0.36 1.40 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.37 6.49 -51.93 -0.34 1.03 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.90 7.13 -51.93 -0.37 1.53 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -27.84 321.41 -7.88 -35.71 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -6.15 Total: 15.69 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -1.84 Total: 5.57 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.12 Total: -44.78 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: 0.19 Total: -29.20 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.84 -7.88 -35.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335901115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.082 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds