Wall clock time and date at job start Tue Mar 31 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99801 * 2 1 4 4 H 1.48506 * 109.46960 * 269.99476 * 3 2 1 5 5 H 1.48503 * 109.47462 * 29.99501 * 3 2 1 6 6 H 1.48509 * 109.47272 * 149.99887 * 3 2 1 7 7 C 1.38948 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99736 * 164.49146 * 7 2 1 9 9 N 1.37103 * 120.00454 * 344.49457 * 7 2 1 10 10 C 1.34781 * 119.99514 * 306.51936 * 9 7 2 11 11 O 1.21288 * 119.99558 * 174.39486 * 10 9 7 12 12 C 1.50698 * 120.00010 * 354.39223 * 10 9 7 13 13 H 1.09003 * 109.29941 * 43.19057 * 12 10 9 14 14 C 1.52921 * 109.30172 * 283.60451 * 12 10 9 15 15 C 1.53345 * 108.67331 * 188.93513 * 14 12 10 16 16 C 1.53073 * 108.42542 * 67.53073 * 15 14 12 17 17 C 1.50175 * 109.89030 * 311.10029 * 16 15 14 18 18 O 1.21284 * 118.24665 * 197.55577 * 17 16 15 19 19 N 1.33351 * 123.50909 * 17.57769 * 17 16 15 20 20 C 1.46498 * 120.00033 * 126.51633 * 9 7 2 21 21 C 1.54883 * 110.59952 * 54.84347 * 20 9 7 22 22 C 1.54893 * 102.74648 * 203.32361 * 21 20 9 23 23 C 1.54267 * 104.19644 * 37.94171 * 22 21 20 24 24 C 1.53874 * 106.59789 * 336.39217 * 23 22 21 25 25 H 0.96998 * 120.00241 * 5.09621 * 1 2 3 26 26 H 1.09004 * 109.60189 * 308.68971 * 14 12 10 27 27 H 1.08994 * 109.60708 * 69.01853 * 14 12 10 28 28 H 1.08999 * 109.67872 * 187.26321 * 15 14 12 29 29 H 1.08999 * 109.67604 * 307.76184 * 15 14 12 30 30 H 1.08999 * 109.40273 * 71.22302 * 16 15 14 31 31 H 1.08997 * 109.40517 * 190.97060 * 16 15 14 32 32 H 0.97006 * 117.94909 * 177.77203 * 19 17 16 33 33 H 1.08998 * 110.43139 * 177.46037 * 20 9 7 34 34 H 1.08999 * 110.75815 * 85.00645 * 21 20 9 35 35 H 1.09000 * 110.75553 * 321.63530 * 21 20 9 36 36 H 1.09000 * 110.48159 * 279.26004 * 22 21 20 37 37 H 1.08996 * 110.48683 * 156.62449 * 22 21 20 38 38 H 1.08993 * 110.03051 * 95.67437 * 23 22 21 39 39 H 1.09001 * 110.02705 * 217.05702 * 23 22 21 40 40 H 1.08998 * 110.03245 * 119.28416 * 24 23 22 41 41 H 1.09005 * 110.03179 * 240.66627 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0594 -1.2204 -0.2495 9 7 1.3609 -2.3690 0.3185 10 6 0.6689 -2.4624 1.4713 11 8 0.0127 -3.4551 1.7059 12 6 0.7107 -1.3336 2.4688 13 1 0.6191 -0.3837 1.9420 14 6 2.0436 -1.3698 3.2176 15 6 1.9841 -0.3652 4.3746 16 6 0.9677 -0.8699 5.4019 17 6 -0.3112 -1.2486 4.7118 18 8 -1.3153 -1.3572 5.3832 19 7 -0.4017 -1.4724 3.4003 20 6 1.4205 -3.5128 -0.5949 21 6 2.8913 -3.8855 -0.9062 22 6 2.7766 -4.6263 -2.2616 23 6 1.6884 -3.8465 -3.0281 24 6 0.8262 -3.1385 -1.9684 25 1 -0.4850 0.8367 -0.0746 26 1 2.2146 -2.3717 3.6116 27 1 2.8523 -1.1011 2.5381 28 1 2.9663 -0.2829 4.8401 29 1 1.6735 0.6096 3.9987 30 1 1.3739 -1.7415 5.9151 31 1 0.7673 -0.0836 6.1296 32 1 -1.2618 -1.7447 3.0438 33 1 0.8923 -4.3666 -0.1705 34 1 3.2935 -4.5457 -0.1379 35 1 3.5039 -2.9895 -1.0064 36 1 2.4674 -5.6600 -2.1063 37 1 3.7240 -4.5873 -2.7991 38 1 2.1501 -3.1106 -3.6863 39 1 1.0756 -4.5351 -3.6100 40 1 0.8695 -2.0589 -2.1123 41 1 -0.2058 -3.4828 -2.0358 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335901115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:12 Heat of formation + Delta-G solvation = -102.171297 kcal Electronic energy + Delta-G solvation = -23636.754169 eV Core-core repulsion = 20321.967958 eV Total energy + Delta-G solvation = -3314.786211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.63350 -40.38586 -38.50300 -37.02972 -36.05000 -33.89990 -33.29349 -30.83356 -29.46360 -28.53028 -26.89212 -25.67028 -23.62565 -21.80819 -21.51101 -20.92437 -19.96108 -18.78600 -18.12878 -17.60478 -17.12025 -16.79448 -16.33872 -16.09874 -15.91315 -15.35708 -15.02884 -14.90606 -14.47475 -14.32522 -14.21401 -14.15296 -13.39864 -13.17466 -12.96807 -12.74907 -12.56868 -12.41228 -12.14689 -12.02803 -11.96785 -11.88193 -11.85215 -11.81905 -11.35154 -11.21531 -11.02543 -10.84689 -10.48620 -9.67061 -9.15296 -8.32605 -6.20063 1.45288 1.53785 1.62611 1.63547 1.99713 2.33106 2.40360 2.98594 3.01171 3.70541 3.86440 3.90387 3.94642 3.98424 4.03061 4.15876 4.44961 4.58209 4.61930 4.68729 4.70861 4.78513 4.80869 4.88344 4.92503 5.02514 5.07793 5.08652 5.17652 5.17869 5.26034 5.35523 5.43022 5.51373 5.56874 5.59467 5.68653 6.10190 6.48615 6.70599 6.99744 7.17132 7.60954 8.07312 8.72666 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.007372 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.748639 B = 3797.378253 C = 4646.568489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.016 3.984 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.340 4.340 8 H 0.099 0.901 9 N -0.442 5.442 10 C 0.491 3.509 11 O -0.644 6.644 12 C 0.127 3.873 13 H 0.118 0.882 14 C -0.118 4.118 15 C -0.113 4.113 16 C -0.125 4.125 17 C 0.507 3.493 18 O -0.621 6.621 19 N -0.695 5.695 20 C 0.119 3.881 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.119 4.119 25 H 0.272 0.728 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.385 0.615 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.874 0.562 -0.319 10.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.161 1.161 7 C -0.467 4.467 8 H 0.116 0.884 9 N -0.160 5.160 10 C 0.280 3.720 11 O -0.533 6.533 12 C 0.020 3.980 13 H 0.135 0.865 14 C -0.156 4.156 15 C -0.150 4.150 16 C -0.165 4.165 17 C 0.297 3.703 18 O -0.505 6.505 19 N -0.342 5.342 20 C 0.015 3.985 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.157 4.157 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.137 0.863 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.218 0.782 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.167 0.222 0.219 10.172 hybrid contribution -1.093 0.561 -0.632 1.382 sum 9.074 0.782 -0.413 9.117 Atomic orbital electron populations 1.70057 1.07837 1.29080 1.45765 1.26298 0.95529 1.02845 0.94042 0.85413 0.79765 0.77646 0.78872 1.20331 1.21169 1.16136 1.19460 0.94522 0.82631 1.50111 0.88391 1.43427 1.46284 1.12168 1.14126 1.20921 0.80643 0.87051 0.83359 1.90491 1.47254 1.35659 1.79872 1.21267 0.87682 1.00036 0.89051 0.86491 1.21779 0.94977 1.00583 0.98281 1.21693 1.00894 0.98118 0.94323 1.21708 0.90844 1.04841 0.99070 1.21085 0.92288 0.75570 0.81399 1.90659 1.39409 1.56618 1.63830 1.45564 1.13798 1.67105 1.07703 1.22013 0.97055 0.89329 0.90099 1.22663 0.95026 1.00362 0.97586 1.22267 0.99270 0.98602 0.94796 1.22032 0.97027 0.98960 0.96944 1.22232 0.97577 1.01029 0.94885 0.91803 0.92012 0.87791 0.86340 0.91264 0.86598 0.86359 0.78220 0.92856 0.92102 0.90489 0.91297 0.89475 0.91243 0.91210 0.92292 0.95076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.74 11.61 21.66 0.25 -43.49 16 2 C 0.02 0.72 3.42 84.93 0.29 1.01 16 3 Si 0.96 34.13 29.58 68.60 2.03 36.16 16 4 H -0.28 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.29 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.24 -7.56 7.11 99.48 0.71 -6.85 16 7 C -0.34 -14.69 6.18 84.04 0.52 -14.17 16 8 H 0.10 3.96 6.74 -2.91 -0.02 3.94 16 9 N -0.44 -20.24 2.45 -607.58 -1.49 -21.73 16 10 C 0.49 24.11 6.17 87.66 0.54 24.65 16 11 O -0.64 -35.93 15.70 -3.05 -0.05 -35.98 16 12 C 0.13 5.40 2.60 44.36 0.12 5.51 16 13 H 0.12 5.29 4.25 -2.39 -0.01 5.28 16 14 C -0.12 -3.88 5.16 30.68 0.16 -3.72 16 15 C -0.11 -2.82 6.03 30.73 0.19 -2.64 16 16 C -0.13 -3.44 6.03 29.71 0.18 -3.26 16 17 C 0.51 20.31 7.71 87.71 0.68 20.99 16 18 O -0.62 -29.16 17.78 -3.04 -0.05 -29.22 16 19 N -0.70 -30.42 4.79 -450.23 -2.16 -32.57 16 20 C 0.12 4.98 3.24 46.06 0.15 5.13 16 21 C -0.12 -3.85 6.41 31.88 0.20 -3.65 16 22 C -0.11 -2.92 6.83 31.67 0.22 -2.70 16 23 C -0.11 -3.25 6.80 31.32 0.21 -3.04 16 24 C -0.12 -4.69 6.42 31.32 0.20 -4.49 16 25 H 0.27 12.95 8.32 -92.71 -0.77 12.18 16 26 H 0.06 2.04 8.10 -2.38 -0.02 2.02 16 27 H 0.10 3.28 7.32 -2.39 -0.02 3.26 16 28 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 30 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.38 18.64 8.40 -92.70 -0.78 17.86 16 33 H 0.05 2.48 7.00 -2.39 -0.02 2.47 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 2.53 6.49 -2.39 -0.02 2.52 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 2.64 7.13 -2.39 -0.02 2.63 16 41 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -63.94 321.41 2.44 -61.50 By element: Atomic # 1 Polarization: 45.45 SS G_CDS: 0.26 Total: 45.71 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 3.65 Total: 19.62 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -3.40 Total: -97.79 kcal Atomic # 8 Polarization: -65.10 SS G_CDS: -0.10 Total: -65.20 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Total: -63.94 2.44 -61.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335901115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.674 kcal (2) G-P(sol) polarization free energy of solvation -63.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds