Wall clock time and date at job start Tue Mar 31 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.47049 * 121.51533 * 359.71785 * 13 11 10 15 15 C 1.50786 * 109.02120 * 137.50095 * 14 13 11 16 16 O 1.21278 * 118.51856 * 192.25827 * 15 14 13 17 17 N 1.33629 * 122.95524 * 12.48030 * 15 14 13 18 18 C 1.45254 * 123.98752 * 355.24903 * 17 15 14 19 19 H 1.08997 * 107.06316 * 266.01378 * 18 17 15 20 20 C 1.52250 * 111.56604 * 148.32024 * 18 17 15 21 21 C 1.52976 * 110.14230 * 292.58539 * 20 18 17 22 22 C 1.53107 * 109.01224 * 300.51964 * 21 20 18 23 23 C 1.53084 * 109.95819 * 60.85248 * 22 21 20 24 24 C 1.47720 * 121.52137 * 180.02562 * 13 11 10 25 25 H 1.09003 * 110.25777 * 2.11941 * 24 13 11 26 26 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 28 28 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 29 29 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 30 30 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 31 31 H 1.09001 * 109.51046 * 257.53129 * 14 13 11 32 32 H 1.09002 * 109.51353 * 17.68741 * 14 13 11 33 33 H 0.96995 * 118.01044 * 175.27584 * 17 15 14 34 34 H 1.08994 * 109.36185 * 52.79003 * 20 18 17 35 35 H 1.09000 * 109.35945 * 172.38032 * 20 18 17 36 36 H 1.08995 * 109.54650 * 60.37695 * 21 20 18 37 37 H 1.08998 * 109.54660 * 180.66246 * 21 20 18 38 38 H 1.09002 * 109.51692 * 181.20342 * 22 21 20 39 39 H 1.09000 * 109.51975 * 301.32302 * 22 21 20 40 40 H 1.08996 * 110.25506 * 179.97438 * 23 22 21 41 41 H 1.08997 * 108.65818 * 60.16617 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 0.0001 12 8 0.2791 -4.9672 0.0000 13 7 2.1658 -6.1344 -0.0003 14 6 3.6357 -6.1733 -0.0075 15 6 4.1040 -7.2345 0.9559 16 8 5.2783 -7.2653 1.2574 17 7 3.2841 -8.1452 1.4889 18 6 1.8459 -8.1608 1.2858 19 1 1.3992 -7.6205 2.1204 20 6 1.2939 -9.5796 1.3017 21 6 1.7970 -10.3543 0.0823 22 6 1.3400 -9.6344 -1.1893 23 6 1.9254 -8.2204 -1.2284 24 6 1.4614 -7.4328 -0.0003 25 1 0.3831 -7.2773 -0.0377 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 -0.8905 30 1 2.8720 -3.6043 0.8894 31 1 3.9887 -6.4072 -1.0119 32 1 4.0271 -5.2037 0.3002 33 1 3.6730 -8.8378 2.0457 34 1 1.6210 -10.0845 2.2106 35 1 0.2046 -9.5437 1.2827 36 1 2.8858 -10.4009 0.1037 37 1 1.3869 -11.3641 0.0971 38 1 1.6762 -10.1914 -2.0639 39 1 0.2523 -9.5650 -1.1976 40 1 1.6034 -7.7035 -2.1323 41 1 3.0130 -8.2930 -1.2222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336035847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:09 Heat of formation + Delta-G solvation = -86.961172 kcal Electronic energy + Delta-G solvation = -22719.550326 eV Core-core repulsion = 19405.423675 eV Total energy + Delta-G solvation = -3314.126651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.27595 -38.90903 -38.14934 -35.08144 -34.19526 -33.52790 -31.31288 -30.37254 -29.76293 -27.50375 -25.71313 -23.39300 -23.08500 -21.58582 -21.07669 -19.33115 -18.64719 -17.29367 -17.04903 -16.47908 -16.18275 -15.86458 -15.51201 -15.11028 -14.50056 -14.42808 -14.31413 -13.88441 -13.60202 -13.25322 -12.98636 -12.74973 -12.31667 -12.29837 -12.19797 -12.12992 -11.56761 -11.16717 -11.03659 -10.92971 -10.89119 -10.67587 -10.61174 -10.38767 -10.00030 -9.67541 -9.30018 -9.23451 -9.06197 -8.61156 -8.33133 -5.97487 -4.02074 2.40888 2.79704 3.00198 3.15560 3.34728 3.39360 3.41360 4.18073 4.24641 4.44871 4.46673 4.50681 4.69221 4.80183 5.00409 5.01792 5.11609 5.18843 5.22864 5.26802 5.37658 5.38066 5.51577 5.63871 5.67967 5.77359 5.82799 5.93755 6.03581 6.11498 6.13789 6.33440 6.60757 6.80770 7.08196 7.47821 7.71655 7.81605 7.98864 8.03945 8.34512 8.56530 9.05589 9.61771 11.13369 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.004000 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.411926 B = 6998.561655 C = 7553.688101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.131 4.131 11 C 0.520 3.480 12 O -0.525 6.525 13 N -0.630 5.630 14 C 0.097 3.903 15 C 0.516 3.484 16 O -0.550 6.550 17 N -0.707 5.707 18 C 0.132 3.868 19 H 0.072 0.928 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.129 4.129 24 C 0.133 3.867 25 H 0.119 0.881 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.397 0.603 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.050 -22.284 -0.187 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.171 4.171 11 C 0.311 3.689 12 O -0.399 6.399 13 N -0.368 5.368 14 C -0.029 4.029 15 C 0.302 3.698 16 O -0.428 6.428 17 N -0.360 5.360 18 C 0.026 3.974 19 H 0.090 0.910 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.168 4.168 24 C 0.030 3.970 25 H 0.137 0.863 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.143 0.857 33 H 0.233 0.767 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.713 -21.919 -0.164 22.231 hybrid contribution 0.622 0.620 0.240 0.911 sum 4.335 -21.298 0.076 21.735 Atomic orbital electron populations 1.69982 1.06062 1.26744 1.50056 1.25010 0.94818 0.99220 0.95209 0.86648 0.79553 0.83116 0.78609 1.20206 1.21283 1.20220 1.21173 0.92934 0.90955 1.51638 0.92594 1.18904 0.93091 0.89290 0.98645 1.21953 1.00912 0.91669 1.02576 1.21639 0.88445 0.85010 0.73801 1.90672 1.14159 1.86848 1.48205 1.48730 1.05548 1.05999 1.76496 1.21885 0.81342 1.00215 0.99422 1.20531 0.85746 0.82456 0.81096 1.90789 1.17016 1.73830 1.61126 1.45434 1.07777 1.31057 1.51705 1.20954 0.80599 0.97172 0.98693 0.91018 1.21694 1.01876 0.93638 0.99164 1.21543 1.01216 0.98746 0.94220 1.21524 1.01149 0.94943 0.97871 1.21912 1.01210 0.95634 0.98007 1.21536 0.99893 0.82478 0.93139 0.86267 0.92874 0.95745 0.95816 0.89926 0.90070 0.87974 0.85688 0.76683 0.90908 0.89649 0.91767 0.91386 0.91467 0.91430 0.90612 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.61 4.09 -27.88 -0.11 -2.72 16 11 C 0.52 9.61 7.73 -10.98 -0.08 9.53 16 12 O -0.52 -11.66 15.51 5.56 0.09 -11.57 16 13 N -0.63 -8.71 2.72 -166.17 -0.45 -9.16 16 14 C 0.10 1.18 5.56 -4.85 -0.03 1.15 16 15 C 0.52 6.52 7.22 -11.45 -0.08 6.44 16 16 O -0.55 -8.76 17.81 5.56 0.10 -8.66 16 17 N -0.71 -7.09 4.86 -55.36 -0.27 -7.36 16 18 C 0.13 1.23 2.96 -69.13 -0.20 1.03 16 19 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.13 -0.80 5.51 -27.13 -0.15 -0.95 16 21 C -0.12 -0.74 5.90 -26.69 -0.16 -0.90 16 22 C -0.12 -0.82 5.89 -26.63 -0.16 -0.98 16 23 C -0.13 -1.19 5.08 -26.64 -0.14 -1.33 16 24 C 0.13 1.50 2.76 -67.36 -0.19 1.31 16 25 H 0.12 1.52 7.13 -51.93 -0.37 1.15 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.08 1.49 8.13 -51.93 -0.42 1.06 16 30 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 31 H 0.10 1.04 7.56 -51.93 -0.39 0.65 16 32 H 0.13 1.54 6.29 -51.93 -0.33 1.22 16 33 H 0.40 3.43 8.64 -40.82 -0.35 3.08 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.44 7.97 -51.93 -0.41 0.02 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.59 6.30 -51.93 -0.33 0.27 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -34.44 325.40 -8.08 -42.52 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.34 Total: -0.72 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.83 Total: -0.09 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.02 Total: -42.97 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.19 Total: -20.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.44 -8.08 -42.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.439 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds