Wall clock time and date at job start Tue Mar 31 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.47049 * 121.51533 * 359.71785 * 13 11 10 15 15 C 1.50786 * 109.02120 * 137.50095 * 14 13 11 16 16 O 1.21278 * 118.51856 * 192.25827 * 15 14 13 17 17 N 1.33629 * 122.95524 * 12.48030 * 15 14 13 18 18 C 1.45254 * 123.98752 * 355.24903 * 17 15 14 19 19 H 1.08997 * 107.06316 * 266.01378 * 18 17 15 20 20 C 1.52250 * 111.56604 * 148.32024 * 18 17 15 21 21 C 1.52976 * 110.14230 * 292.58539 * 20 18 17 22 22 C 1.53107 * 109.01224 * 300.51964 * 21 20 18 23 23 C 1.53084 * 109.95819 * 60.85248 * 22 21 20 24 24 C 1.47720 * 121.52137 * 180.02562 * 13 11 10 25 25 H 1.09003 * 110.25777 * 2.11941 * 24 13 11 26 26 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 28 28 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 29 29 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 30 30 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 31 31 H 1.09001 * 109.51046 * 257.53129 * 14 13 11 32 32 H 1.09002 * 109.51353 * 17.68741 * 14 13 11 33 33 H 0.96995 * 118.01044 * 175.27584 * 17 15 14 34 34 H 1.08994 * 109.36185 * 52.79003 * 20 18 17 35 35 H 1.09000 * 109.35945 * 172.38032 * 20 18 17 36 36 H 1.08995 * 109.54650 * 60.37695 * 21 20 18 37 37 H 1.08998 * 109.54660 * 180.66246 * 21 20 18 38 38 H 1.09002 * 109.51692 * 181.20342 * 22 21 20 39 39 H 1.09000 * 109.51975 * 301.32302 * 22 21 20 40 40 H 1.08996 * 110.25506 * 179.97438 * 23 22 21 41 41 H 1.08997 * 108.65818 * 60.16617 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 0.0001 12 8 0.2791 -4.9672 0.0000 13 7 2.1658 -6.1344 -0.0003 14 6 3.6357 -6.1733 -0.0075 15 6 4.1040 -7.2345 0.9559 16 8 5.2783 -7.2653 1.2574 17 7 3.2841 -8.1452 1.4889 18 6 1.8459 -8.1608 1.2858 19 1 1.3992 -7.6205 2.1204 20 6 1.2939 -9.5796 1.3017 21 6 1.7970 -10.3543 0.0823 22 6 1.3400 -9.6344 -1.1893 23 6 1.9254 -8.2204 -1.2284 24 6 1.4614 -7.4328 -0.0003 25 1 0.3831 -7.2773 -0.0377 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 -0.8905 30 1 2.8720 -3.6043 0.8894 31 1 3.9887 -6.4072 -1.0119 32 1 4.0271 -5.2037 0.3002 33 1 3.6730 -8.8378 2.0457 34 1 1.6210 -10.0845 2.2106 35 1 0.2046 -9.5437 1.2827 36 1 2.8858 -10.4009 0.1037 37 1 1.3869 -11.3641 0.0971 38 1 1.6762 -10.1914 -2.0639 39 1 0.2523 -9.5650 -1.1976 40 1 1.6034 -7.7035 -2.1323 41 1 3.0130 -8.2930 -1.2222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336035847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:08 Heat of formation + Delta-G solvation = -111.191003 kcal Electronic energy + Delta-G solvation = -22720.601010 eV Core-core repulsion = 19405.423675 eV Total energy + Delta-G solvation = -3315.177335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29399 -40.26578 -39.11558 -36.22421 -35.59971 -35.06112 -33.10857 -31.23075 -30.75469 -28.71800 -27.49431 -24.59838 -23.79738 -23.13893 -22.05071 -20.51924 -19.64592 -18.88534 -18.16309 -17.89525 -17.23309 -16.97338 -16.79296 -16.46263 -16.33912 -15.57906 -15.16643 -14.87885 -14.64719 -14.44695 -14.26986 -13.85110 -13.68040 -13.54460 -13.34945 -13.12613 -12.98781 -12.79060 -12.51348 -12.28228 -11.94754 -11.75008 -11.61377 -11.54826 -11.48943 -11.34433 -11.30440 -10.68288 -10.55647 -10.21002 -9.74922 -8.17930 -6.31718 1.39170 1.42620 1.46624 1.54190 1.55317 1.68135 2.17334 2.43049 3.15232 3.26520 3.42323 3.60287 3.76959 3.86218 4.04907 4.07813 4.16558 4.28611 4.39160 4.40697 4.42666 4.50110 4.51968 4.70780 4.82074 4.96335 5.00454 5.09580 5.14314 5.21403 5.29317 5.33717 5.46028 5.49378 5.61445 5.74330 5.84216 6.12700 6.14373 6.17648 6.85664 7.02604 7.11903 7.38480 8.94338 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.004000 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.411926 B = 6998.561655 C = 7553.688101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.045 3.955 10 C -0.122 4.122 11 C 0.523 3.477 12 O -0.573 6.573 13 N -0.618 5.618 14 C 0.093 3.907 15 C 0.518 3.482 16 O -0.583 6.583 17 N -0.694 5.694 18 C 0.137 3.863 19 H 0.059 0.941 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.123 4.123 24 C 0.127 3.873 25 H 0.102 0.898 26 H 0.263 0.737 27 H -0.014 1.014 28 H -0.017 1.017 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.408 0.592 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -23.746 -0.229 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.007 3.993 10 C -0.161 4.161 11 C 0.313 3.687 12 O -0.452 6.452 13 N -0.353 5.353 14 C -0.032 4.032 15 C 0.305 3.695 16 O -0.464 6.464 17 N -0.346 5.346 18 C 0.031 3.969 19 H 0.078 0.922 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.161 4.161 24 C 0.024 3.976 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.005 0.995 28 H 0.002 0.998 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.245 0.755 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.656 -23.452 -0.198 24.125 hybrid contribution -0.011 1.002 0.255 1.034 sum 5.646 -22.449 0.057 23.148 Atomic orbital electron populations 1.70157 1.08199 1.27869 1.51336 1.26079 0.95692 1.03750 0.94582 0.85415 0.78109 0.77564 0.79425 1.18691 1.21255 1.18917 1.21672 0.93954 0.91669 1.51015 0.90780 1.18670 0.93568 0.92140 0.94895 1.21707 0.99554 0.90290 1.04553 1.21260 0.87660 0.85955 0.73786 1.90656 1.16011 1.87609 1.50876 1.48575 1.06513 1.05725 1.74478 1.22092 0.79717 1.00483 1.00956 1.20483 0.85408 0.82651 0.80992 1.90785 1.18355 1.74791 1.62422 1.45353 1.07821 1.30510 1.50883 1.20966 0.80017 0.99012 0.96891 0.92246 1.21706 1.02208 0.91424 1.00432 1.21534 1.01126 0.99435 0.93165 1.21540 1.01174 0.93442 0.99089 1.21868 1.01393 0.96666 0.96208 1.21776 0.98914 0.81421 0.95474 0.87974 0.92827 0.99541 0.99840 0.87547 0.88316 0.85411 0.85620 0.75465 0.88953 0.88902 0.91952 0.89467 0.90296 0.91274 0.91635 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.29 21.45 0.28 -58.72 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.04 2.48 4.26 29.85 0.13 2.60 16 10 C -0.12 -4.85 4.09 29.85 0.12 -4.73 16 11 C 0.52 19.74 7.73 87.66 0.68 20.42 16 12 O -0.57 -26.80 15.51 -3.02 -0.05 -26.85 16 13 N -0.62 -16.77 2.72 -798.02 -2.17 -18.94 16 14 C 0.09 2.10 5.56 85.56 0.48 2.57 16 15 C 0.52 12.22 7.22 87.86 0.63 12.86 16 16 O -0.58 -17.68 17.81 -3.02 -0.05 -17.74 16 17 N -0.69 -12.53 4.86 -448.11 -2.18 -14.70 16 18 C 0.14 2.34 2.96 44.88 0.13 2.47 16 19 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 20 C -0.12 -1.21 5.51 30.34 0.17 -1.04 16 21 C -0.12 -1.05 5.90 30.62 0.18 -0.87 16 22 C -0.11 -1.34 5.89 30.66 0.18 -1.15 16 23 C -0.12 -2.08 5.08 30.65 0.16 -1.92 16 24 C 0.13 2.77 2.76 44.69 0.12 2.89 16 25 H 0.10 2.65 7.13 -2.39 -0.02 2.63 16 26 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 27 H -0.01 -0.86 8.10 -2.39 -0.02 -0.88 16 28 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 29 H 0.11 3.72 8.13 -2.39 -0.02 3.70 16 30 H 0.10 3.58 7.58 -2.39 -0.02 3.57 16 31 H 0.13 2.30 7.56 -2.39 -0.02 2.28 16 32 H 0.13 2.88 6.29 -2.39 -0.02 2.87 16 33 H 0.41 6.04 8.64 -92.71 -0.80 5.23 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.63 7.97 -2.39 -0.02 0.61 16 37 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.09 6.30 -2.39 -0.02 1.08 16 Total: -1.00 -77.74 325.40 1.77 -75.98 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.23 Total: 10.98 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 3.67 Total: 3.65 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -4.06 Total: -92.36 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.10 Total: -44.59 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -77.74 1.77 -75.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.215 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds