Wall clock time and date at job start Tue Mar 31 2020 02:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47065 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99805 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00483 * 180.02562 * 11 10 9 14 14 C 1.47292 * 121.64711 * 359.97438 * 13 11 10 15 15 C 1.50337 * 109.62201 * 219.76033 * 14 13 11 16 16 O 1.21281 * 118.26003 * 169.51217 * 15 14 13 17 17 N 1.33834 * 123.48581 * 349.48237 * 15 14 13 18 18 C 1.45119 * 123.13053 * 5.91494 * 17 15 14 19 19 H 1.08998 * 108.34396 * 91.22683 * 18 17 15 20 20 C 1.52533 * 112.63881 * 211.04841 * 18 17 15 21 21 C 1.53294 * 108.66267 * 184.37391 * 20 18 17 22 22 C 1.52854 * 110.15319 * 300.98272 * 21 20 18 23 23 C 1.53276 * 110.17755 * 58.43606 * 22 21 20 24 24 C 1.46720 * 121.65173 * 179.71566 * 13 11 10 25 25 H 1.09002 * 109.47120 * 237.51875 * 24 13 11 26 26 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 28 28 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 29 29 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 30 30 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 31 31 H 1.09003 * 109.44621 * 339.80143 * 14 13 11 32 32 H 1.09001 * 109.44695 * 99.74029 * 14 13 11 33 33 H 0.96998 * 118.43333 * 185.89330 * 17 15 14 34 34 H 1.09006 * 109.60506 * 304.12161 * 20 18 17 35 35 H 1.09000 * 109.60748 * 64.61801 * 20 18 17 36 36 H 1.08998 * 109.35954 * 61.18787 * 21 20 18 37 37 H 1.08999 * 109.35969 * 180.77537 * 21 20 18 38 38 H 1.08992 * 109.35447 * 178.65476 * 22 21 20 39 39 H 1.08998 * 109.35257 * 298.36404 * 22 21 20 40 40 H 1.09000 * 109.60634 * 60.54570 * 23 22 21 41 41 H 1.09008 * 109.60702 * 181.03945 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5286 -2.6365 0.0009 12 8 6.1350 -1.5861 0.0005 13 7 6.2025 -3.8036 0.0003 14 6 5.5031 -5.0999 0.0002 15 6 6.2218 -6.0614 0.9053 16 8 5.6784 -7.1116 1.1750 17 7 7.4297 -5.8203 1.4288 18 6 8.1206 -4.5529 1.2788 19 1 7.8559 -3.9160 2.1229 20 6 9.6375 -4.7105 1.2538 21 6 10.2747 -3.3171 1.2037 22 6 9.7981 -2.5645 -0.0385 23 6 8.2702 -2.4429 -0.0292 24 6 7.6691 -3.8458 -0.0060 25 1 8.0127 -4.4096 -0.8733 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6803 -0.8889 28 1 3.8746 -0.6799 0.8911 29 1 3.6579 -3.1505 0.8908 30 1 3.6587 -3.1502 -0.8892 31 1 4.4820 -4.9614 0.3556 32 1 5.4834 -5.5016 -1.0129 33 1 7.8639 -6.5263 1.9327 34 1 9.9661 -5.2307 2.1536 35 1 9.9317 -5.2792 0.3717 36 1 9.9916 -2.7581 2.0955 37 1 11.3596 -3.4169 1.1715 38 1 10.2397 -1.5681 -0.0487 39 1 10.1097 -3.1068 -0.9311 40 1 7.9526 -1.8906 0.8553 41 1 7.9393 -1.9214 -0.9273 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336035852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:11 Heat of formation + Delta-G solvation = -76.781781 kcal Electronic energy + Delta-G solvation = -22818.534854 eV Core-core repulsion = 19504.849615 eV Total energy + Delta-G solvation = -3313.685239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27049 -39.18605 -38.11447 -35.32505 -34.34137 -33.59748 -31.59004 -30.29977 -29.59365 -27.58848 -25.93330 -23.44918 -22.99467 -21.27278 -20.47374 -20.22179 -18.74094 -17.45751 -17.23472 -16.79785 -16.05127 -15.87015 -15.43735 -15.24674 -14.46601 -14.30267 -14.20382 -14.04657 -13.69217 -13.35336 -12.97882 -12.67503 -12.51467 -12.42378 -12.32882 -11.88517 -11.66672 -11.40092 -11.14211 -11.00464 -10.90318 -10.73809 -10.35376 -10.16843 -10.05021 -9.79313 -9.38198 -9.21433 -8.89902 -8.65244 -8.52592 -6.04614 -4.03801 2.33734 2.73842 2.87178 3.04421 3.35598 3.42553 3.51944 4.09292 4.22590 4.46717 4.48521 4.57894 4.74831 4.86690 5.00073 5.01871 5.02652 5.18397 5.22371 5.23152 5.30587 5.40997 5.53025 5.68453 5.71867 5.83932 5.90554 5.96065 6.00468 6.16624 6.21001 6.48255 6.57463 6.61345 7.00469 7.30495 7.36024 7.38249 7.76035 7.92086 8.39478 8.51932 8.98348 9.57918 11.08220 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.004832 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.297243 B = 5793.668568 C = 6912.918400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.261 1.261 6 H -0.288 1.288 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.125 4.125 11 C 0.520 3.480 12 O -0.523 6.523 13 N -0.627 5.627 14 C 0.098 3.902 15 C 0.515 3.485 16 O -0.547 6.547 17 N -0.713 5.713 18 C 0.122 3.878 19 H 0.074 0.926 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.102 4.102 24 C 0.137 3.863 25 H 0.077 0.923 26 H 0.263 0.737 27 H 0.020 0.980 28 H 0.024 0.976 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.399 0.601 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.908 -10.109 0.837 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.186 1.186 6 H -0.215 1.215 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.035 4.035 10 C -0.165 4.165 11 C 0.311 3.689 12 O -0.398 6.398 13 N -0.364 5.364 14 C -0.028 4.028 15 C 0.302 3.698 16 O -0.424 6.424 17 N -0.365 5.365 18 C 0.016 3.984 19 H 0.092 0.908 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.167 4.167 23 C -0.140 4.140 24 C 0.033 3.967 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.145 0.855 32 H 0.123 0.877 33 H 0.235 0.765 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 21.629 -9.761 0.858 23.745 hybrid contribution 0.531 0.455 0.188 0.724 sum 22.160 -9.306 1.046 24.057 Atomic orbital electron populations 1.69912 1.06306 1.26990 1.50910 1.24971 0.94693 0.99200 0.94313 0.86800 0.80590 0.83450 0.78711 1.20246 1.18564 1.21456 1.21101 0.89220 0.94609 1.51481 0.90900 1.19367 0.96515 0.89909 0.97666 1.21778 0.87778 1.03588 1.03362 1.21542 0.91508 0.81913 0.73916 1.90684 1.69745 1.30979 1.48424 1.48406 1.05784 1.05972 1.76265 1.21872 0.98373 0.82178 1.00367 1.20478 0.81254 0.87735 0.80366 1.90800 1.64767 1.26671 1.60162 1.45466 1.18865 1.16654 1.55473 1.21355 0.92929 0.84740 0.99424 0.90789 1.21755 0.92708 0.98633 1.02948 1.21522 1.00067 0.94687 0.99200 1.21760 0.96572 1.00724 0.97637 1.21887 0.92698 0.93586 1.05802 1.21532 0.80244 0.98792 0.96173 0.90470 0.92688 0.96199 0.95816 0.89513 0.89382 0.85467 0.87652 0.76518 0.90926 0.90947 0.91482 0.91360 0.91184 0.92114 0.89568 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.53 -14.80 9.66 -34.44 -0.33 -15.13 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.00 0.08 3.33 -27.88 -0.09 -0.01 16 10 C -0.13 -2.33 4.14 -27.88 -0.12 -2.44 16 11 C 0.52 8.77 7.68 -10.99 -0.08 8.69 16 12 O -0.52 -10.13 11.85 5.55 0.07 -10.06 16 13 N -0.63 -8.17 2.98 -166.81 -0.50 -8.67 16 14 C 0.10 1.13 6.35 -4.94 -0.03 1.10 16 15 C 0.52 6.37 7.81 -11.58 -0.09 6.28 16 16 O -0.55 -8.59 17.80 5.56 0.10 -8.49 16 17 N -0.71 -7.03 5.28 -55.04 -0.29 -7.32 16 18 C 0.12 1.12 2.83 -68.68 -0.19 0.92 16 19 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 20 C -0.12 -0.79 5.63 -26.82 -0.15 -0.94 16 21 C -0.12 -0.79 5.89 -26.65 -0.16 -0.94 16 22 C -0.13 -1.06 5.89 -26.66 -0.16 -1.21 16 23 C -0.10 -1.17 3.69 -26.77 -0.10 -1.27 16 24 C 0.14 1.48 2.66 -67.76 -0.18 1.30 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 28 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 29 H 0.09 1.53 7.56 -51.93 -0.39 1.13 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.13 1.49 6.36 -51.93 -0.33 1.16 16 32 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 3.36 8.70 -40.82 -0.36 3.00 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 1.19 6.89 -51.93 -0.36 0.83 16 41 H 0.09 1.19 6.99 -51.92 -0.36 0.83 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -33.71 319.98 -7.85 -41.56 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.37 Total: -0.62 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.78 Total: -1.74 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.01 Total: -42.99 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.16 Total: -18.56 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.71 -7.85 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.223 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds