Wall clock time and date at job start Tue Mar 31 2020 02:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47065 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99805 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00483 * 180.02562 * 11 10 9 14 14 C 1.47292 * 121.64711 * 359.97438 * 13 11 10 15 15 C 1.50337 * 109.62201 * 219.76033 * 14 13 11 16 16 O 1.21281 * 118.26003 * 169.51217 * 15 14 13 17 17 N 1.33834 * 123.48581 * 349.48237 * 15 14 13 18 18 C 1.45119 * 123.13053 * 5.91494 * 17 15 14 19 19 H 1.08998 * 108.34396 * 91.22683 * 18 17 15 20 20 C 1.52533 * 112.63881 * 211.04841 * 18 17 15 21 21 C 1.53294 * 108.66267 * 184.37391 * 20 18 17 22 22 C 1.52854 * 110.15319 * 300.98272 * 21 20 18 23 23 C 1.53276 * 110.17755 * 58.43606 * 22 21 20 24 24 C 1.46720 * 121.65173 * 179.71566 * 13 11 10 25 25 H 1.09002 * 109.47120 * 237.51875 * 24 13 11 26 26 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 28 28 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 29 29 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 30 30 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 31 31 H 1.09003 * 109.44621 * 339.80143 * 14 13 11 32 32 H 1.09001 * 109.44695 * 99.74029 * 14 13 11 33 33 H 0.96998 * 118.43333 * 185.89330 * 17 15 14 34 34 H 1.09006 * 109.60506 * 304.12161 * 20 18 17 35 35 H 1.09000 * 109.60748 * 64.61801 * 20 18 17 36 36 H 1.08998 * 109.35954 * 61.18787 * 21 20 18 37 37 H 1.08999 * 109.35969 * 180.77537 * 21 20 18 38 38 H 1.08992 * 109.35447 * 178.65476 * 22 21 20 39 39 H 1.08998 * 109.35257 * 298.36404 * 22 21 20 40 40 H 1.09000 * 109.60634 * 60.54570 * 23 22 21 41 41 H 1.09008 * 109.60702 * 181.03945 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5286 -2.6365 0.0009 12 8 6.1350 -1.5861 0.0005 13 7 6.2025 -3.8036 0.0003 14 6 5.5031 -5.0999 0.0002 15 6 6.2218 -6.0614 0.9053 16 8 5.6784 -7.1116 1.1750 17 7 7.4297 -5.8203 1.4288 18 6 8.1206 -4.5529 1.2788 19 1 7.8559 -3.9160 2.1229 20 6 9.6375 -4.7105 1.2538 21 6 10.2747 -3.3171 1.2037 22 6 9.7981 -2.5645 -0.0385 23 6 8.2702 -2.4429 -0.0292 24 6 7.6691 -3.8458 -0.0060 25 1 8.0127 -4.4096 -0.8733 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6803 -0.8889 28 1 3.8746 -0.6799 0.8911 29 1 3.6579 -3.1505 0.8908 30 1 3.6587 -3.1502 -0.8892 31 1 4.4820 -4.9614 0.3556 32 1 5.4834 -5.5016 -1.0129 33 1 7.8639 -6.5263 1.9327 34 1 9.9661 -5.2307 2.1536 35 1 9.9317 -5.2792 0.3717 36 1 9.9916 -2.7581 2.0955 37 1 11.3596 -3.4169 1.1715 38 1 10.2397 -1.5681 -0.0487 39 1 10.1097 -3.1068 -0.9311 40 1 7.9526 -1.8906 0.8553 41 1 7.9393 -1.9214 -0.9273 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336035852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:10 Heat of formation + Delta-G solvation = -100.710503 kcal Electronic energy + Delta-G solvation = -22819.572481 eV Core-core repulsion = 19504.849615 eV Total energy + Delta-G solvation = -3314.722866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27167 -40.35966 -39.06545 -36.35215 -35.60066 -35.26291 -33.41775 -31.27715 -30.41235 -28.86768 -27.49643 -24.53653 -23.76239 -22.85221 -21.45188 -21.17764 -19.92332 -19.08009 -18.26548 -18.05856 -17.30849 -17.01866 -16.45097 -16.34605 -16.17855 -15.50319 -15.08778 -15.07765 -14.92504 -14.60041 -14.40235 -14.06300 -13.70491 -13.52823 -13.25330 -13.20554 -12.90511 -12.70068 -12.38314 -12.06653 -11.97161 -11.81779 -11.76632 -11.72455 -11.48693 -11.38085 -11.27159 -10.77473 -10.26534 -10.16325 -9.71136 -8.30718 -6.34105 1.34161 1.36094 1.36170 1.50445 1.56602 1.69012 2.12753 2.35457 3.05140 3.20842 3.40892 3.57504 3.82379 3.95730 4.06414 4.13591 4.18013 4.27294 4.33615 4.37426 4.42718 4.44618 4.48906 4.81555 4.84543 4.89619 4.99960 5.14060 5.19200 5.25896 5.31368 5.36245 5.43013 5.44637 5.59134 5.60827 5.73183 6.10684 6.14077 6.24773 6.72701 7.00284 7.13628 7.31287 8.85141 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.004832 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.297243 B = 5793.668568 C = 6912.918400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.258 1.258 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.009 3.991 10 C -0.121 4.121 11 C 0.524 3.476 12 O -0.553 6.553 13 N -0.618 5.618 14 C 0.095 3.905 15 C 0.517 3.483 16 O -0.583 6.583 17 N -0.700 5.700 18 C 0.128 3.872 19 H 0.060 0.940 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.096 4.096 24 C 0.131 3.869 25 H 0.099 0.901 26 H 0.267 0.733 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.409 0.591 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.787 -10.913 0.680 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.183 1.183 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.065 0.935 9 C -0.029 4.029 10 C -0.161 4.161 11 C 0.315 3.685 12 O -0.431 6.431 13 N -0.353 5.353 14 C -0.031 4.031 15 C 0.304 3.696 16 O -0.463 6.463 17 N -0.351 5.351 18 C 0.022 3.978 19 H 0.078 0.922 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.135 4.135 24 C 0.028 3.972 25 H 0.117 0.883 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.247 0.753 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 24.558 -10.596 0.710 26.755 hybrid contribution -0.376 0.643 0.242 0.783 sum 24.182 -9.953 0.951 26.167 Atomic orbital electron populations 1.70035 1.07913 1.28103 1.52523 1.25825 0.95468 1.02941 0.94218 0.85804 0.79276 0.79295 0.79188 1.19244 1.18252 1.20617 1.21437 0.91385 0.93631 1.50373 0.93452 1.19197 0.93788 0.93369 0.96575 1.21592 0.89669 1.00239 1.04591 1.21038 0.90659 0.82624 0.74219 1.90694 1.70014 1.32301 1.50125 1.48262 1.07014 1.05353 1.74716 1.22033 0.97996 0.81212 1.01814 1.20503 0.81679 0.87166 0.80245 1.90794 1.65806 1.28108 1.61633 1.45391 1.18109 1.17076 1.54535 1.21364 0.94887 0.83838 0.97753 0.92203 1.21753 0.89930 0.98856 1.04649 1.21516 1.01366 0.94383 0.97902 1.21710 0.93681 1.01404 0.99266 1.21701 0.95310 0.93341 1.03120 1.21789 0.78472 0.98945 0.98020 0.88335 0.92412 0.96840 0.97047 0.88724 0.87914 0.85749 0.85062 0.75345 0.89015 0.89481 0.92245 0.89113 0.91265 0.90568 0.92420 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.94 46.16 27.47 68.60 1.88 48.04 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 7 C -0.53 -30.39 9.66 25.60 0.25 -30.14 16 8 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 9 C 0.01 0.42 3.33 29.85 0.10 0.52 16 10 C -0.12 -4.49 4.14 29.85 0.12 -4.36 16 11 C 0.52 17.47 7.68 87.66 0.67 18.15 16 12 O -0.55 -21.61 11.85 -3.06 -0.04 -21.64 16 13 N -0.62 -15.29 2.98 -800.06 -2.38 -17.67 16 14 C 0.09 2.02 6.35 85.37 0.54 2.56 16 15 C 0.52 11.87 7.81 87.69 0.68 12.55 16 16 O -0.58 -17.62 17.80 -3.03 -0.05 -17.68 16 17 N -0.70 -12.08 5.28 -446.97 -2.36 -14.44 16 18 C 0.13 2.02 2.83 45.24 0.13 2.15 16 19 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 20 C -0.11 -1.04 5.63 30.54 0.17 -0.87 16 21 C -0.11 -1.16 5.89 30.64 0.18 -0.98 16 22 C -0.12 -1.73 5.89 30.64 0.18 -1.55 16 23 C -0.10 -2.15 3.69 30.57 0.11 -2.03 16 24 C 0.13 2.57 2.66 44.98 0.12 2.69 16 25 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.01 0.66 7.53 -2.39 -0.02 0.64 16 28 H 0.01 0.57 7.16 -2.39 -0.02 0.55 16 29 H 0.09 3.32 7.56 -2.39 -0.02 3.30 16 30 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 31 H 0.12 2.78 6.36 -2.39 -0.02 2.76 16 32 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.41 5.74 8.70 -92.71 -0.81 4.93 16 34 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.61 6.89 -2.39 -0.02 1.59 16 41 H 0.06 1.65 6.99 -2.38 -0.02 1.63 16 Total: -1.00 -74.29 319.98 1.25 -73.04 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.17 Total: 9.39 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 3.73 Total: -0.09 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -4.44 Total: -91.05 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.09 Total: -39.32 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.88 Total: 48.04 kcal Total: -74.29 1.25 -73.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.672 kcal (2) G-P(sol) polarization free energy of solvation -74.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds