Wall clock time and date at job start Tue Mar 31 2020 02:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 119.99798 * 2 1 4 4 H 1.48500 * 109.47165 * 239.99636 * 3 2 1 5 5 H 1.48500 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47163 * 119.99354 * 3 2 1 7 7 C 1.38946 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00178 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00173 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00144 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99886 * 179.97438 * 10 9 7 13 13 C 1.53497 * 114.20506 * 180.02562 * 12 10 9 14 14 N 1.47065 * 87.98618 * 139.65477 * 13 12 10 15 15 C 1.34776 * 136.05602 * 152.84465 * 14 13 12 16 16 O 1.21282 * 120.00350 * 5.42523 * 15 14 13 17 17 C 1.50698 * 119.99895 * 185.43111 * 15 14 13 18 18 C 1.52997 * 109.47232 * 88.22067 * 17 15 14 19 19 C 1.53005 * 109.46829 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.47454 * 299.99879 * 19 18 17 21 21 C 1.53004 * 109.46989 * 59.99952 * 20 19 18 22 22 C 1.53001 * 109.47158 * 299.99952 * 21 20 19 23 23 C 1.47062 * 87.88357 * 333.10199 * 14 13 12 24 24 H 0.96999 * 120.00100 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00036 * 359.97438 * 9 7 2 26 26 H 1.08998 * 113.28466 * 46.93764 * 12 10 9 27 27 H 1.09007 * 113.46749 * 24.87609 * 13 12 10 28 28 H 1.08996 * 113.46784 * 254.43904 * 13 12 10 29 29 H 1.09001 * 109.47174 * 328.21590 * 17 15 14 30 30 H 1.08995 * 109.47043 * 299.99786 * 18 17 15 31 31 H 1.08997 * 109.47078 * 60.00330 * 18 17 15 32 32 H 1.09010 * 109.46886 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.46994 * 60.00311 * 19 18 17 34 34 H 1.09008 * 109.47184 * 300.00600 * 20 19 18 35 35 H 1.08997 * 109.47653 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.46897 * 180.02562 * 21 20 19 37 37 H 1.08996 * 109.46528 * 60.00637 * 21 20 19 38 38 H 1.08997 * 109.47220 * 299.99762 * 22 21 20 39 39 H 1.09002 * 109.46655 * 179.97438 * 22 21 20 40 40 H 1.09001 * 113.46615 * 141.68173 * 23 14 13 41 41 H 1.09002 * 113.46684 * 272.11556 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 6 2.1417 -6.1079 0.0017 14 7 1.2029 -6.7208 0.9535 15 6 0.8276 -7.9745 1.2755 16 8 1.3904 -8.9240 0.7728 17 6 -0.2914 -8.1967 2.2600 18 6 -1.6282 -8.2201 1.5161 19 6 -2.7642 -8.4462 2.5157 20 6 -2.5555 -9.7823 3.2313 21 6 -1.2187 -9.7589 3.9753 22 6 -0.0826 -9.5328 2.9757 23 6 0.8491 -5.3632 1.3946 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3907 0.0005 26 1 0.4362 -4.8944 -0.7300 27 1 3.1314 -5.9293 0.4222 28 1 2.1780 -6.6173 -0.9612 29 1 -0.2970 -7.3890 2.9920 30 1 -1.7767 -7.2684 1.0059 31 1 -1.6225 -9.0278 0.7842 32 1 -3.7166 -8.4634 1.9856 33 1 -2.7700 -7.6388 3.2479 34 1 -2.5496 -10.5897 2.4990 35 1 -3.3650 -9.9436 3.9431 36 1 -1.0697 -10.7110 4.4848 37 1 -1.2246 -8.9516 4.7075 38 1 -0.0768 -10.3402 2.2435 39 1 0.8697 -9.5157 3.5058 40 1 -0.2116 -5.2407 1.6138 41 1 1.4909 -4.9842 2.1900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336204868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:18 Heat of formation + Delta-G solvation = -62.767018 kcal Electronic energy + Delta-G solvation = -21883.056728 eV Core-core repulsion = 18569.979215 eV Total energy + Delta-G solvation = -3313.077513 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62381 -39.12157 -37.59708 -36.74635 -34.03203 -31.62366 -31.31945 -30.95538 -29.49613 -25.98349 -25.42315 -23.80390 -22.80815 -22.16350 -20.02670 -19.18663 -18.67553 -17.98209 -16.99379 -16.55890 -16.14164 -15.21239 -14.88523 -14.61681 -14.33917 -14.15975 -14.08691 -13.87032 -13.40761 -13.25180 -12.57722 -12.48638 -12.42577 -12.35190 -12.15187 -11.66621 -11.59212 -11.45442 -11.32178 -11.12567 -10.85405 -10.64272 -10.52686 -10.48900 -10.31456 -10.26783 -9.61648 -9.56709 -8.72304 -8.38714 -8.08265 -6.51696 -3.92880 2.68286 2.91290 3.13049 3.21236 3.25444 3.66018 4.09962 4.30969 4.47893 4.53718 4.64180 4.84706 4.89561 4.96020 5.04101 5.19375 5.20961 5.21614 5.25454 5.31823 5.40662 5.52764 5.53625 5.57447 5.69177 5.80526 5.82390 5.87105 5.88412 5.94616 5.98049 6.04987 6.09144 6.20685 6.25272 6.39547 7.46093 7.83415 7.95102 8.24065 8.48328 9.06574 9.42116 9.92322 10.65234 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027718 B = 0.003409 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.928321 B = 8210.748386 C = 8877.710741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.104 0.896 9 N -0.552 5.552 10 C 0.448 3.552 11 O -0.592 6.592 12 C -0.139 4.139 13 C 0.128 3.872 14 N -0.647 5.647 15 C 0.545 3.455 16 O -0.547 6.547 17 C -0.098 4.098 18 C -0.107 4.107 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.102 4.102 23 C 0.116 3.884 24 H 0.274 0.726 25 H 0.394 0.606 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.921 -14.103 6.345 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.434 4.434 8 H 0.122 0.878 9 N -0.186 5.186 10 C 0.233 3.767 11 O -0.478 6.478 12 C -0.162 4.162 13 C 0.005 3.995 14 N -0.383 5.383 15 C 0.335 3.665 16 O -0.425 6.425 17 C -0.120 4.120 18 C -0.145 4.145 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.140 4.140 23 C -0.007 4.007 24 H 0.084 0.916 25 H 0.227 0.773 26 H 0.131 0.869 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.021 -14.658 6.135 17.372 hybrid contribution -0.204 1.037 -0.007 1.057 sum -7.225 -13.621 6.128 16.592 Atomic orbital electron populations 1.69598 1.05973 1.28520 1.49689 1.25286 0.95636 0.99837 0.96896 0.85907 0.78813 0.80289 0.79185 1.19802 1.20904 1.19795 1.19698 0.93454 0.82184 1.48063 0.87809 1.41878 1.09306 1.04552 1.62865 1.19309 0.87887 0.84163 0.85307 1.90539 1.13685 1.86952 1.56574 1.22888 1.00159 0.94717 0.98412 1.22817 0.94560 0.88620 0.93464 1.49728 1.42942 1.04683 1.40898 1.20227 0.83875 0.80322 0.82036 1.90675 1.56668 1.40184 1.54932 1.21257 0.93718 1.00190 0.96816 1.21456 0.92328 1.02706 0.97999 1.21527 0.97918 0.97757 0.98266 1.21564 0.97183 0.97732 0.99411 1.21548 0.94500 1.01805 0.97765 1.21398 0.98422 0.95985 0.98185 1.22923 1.01672 0.79063 0.97059 0.91636 0.77253 0.86931 0.88259 0.90544 0.89298 0.91293 0.91269 0.91580 0.91648 0.91891 0.91997 0.91725 0.91875 0.90709 0.91767 0.90004 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.27 13.05 55.50 0.72 -22.55 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.30 -8.09 9.68 -14.94 -0.14 -8.23 16 8 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 9 N -0.55 -13.08 5.29 -10.97 -0.06 -13.14 16 10 C 0.45 9.84 7.35 -10.98 -0.08 9.76 16 11 O -0.59 -15.21 15.52 5.55 0.09 -15.12 16 12 C -0.14 -2.28 4.48 -91.39 -0.41 -2.69 16 13 C 0.13 2.09 7.97 -8.52 -0.07 2.02 16 14 N -0.65 -9.73 3.69 -185.42 -0.68 -10.42 16 15 C 0.55 8.29 7.15 -10.99 -0.08 8.21 16 16 O -0.55 -10.20 16.92 5.56 0.09 -10.10 16 17 C -0.10 -1.12 2.40 -91.77 -0.22 -1.34 16 18 C -0.11 -1.07 5.19 -26.73 -0.14 -1.20 16 19 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 20 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 21 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 22 C -0.10 -1.08 4.78 -26.73 -0.13 -1.21 16 23 C 0.12 1.62 7.82 -8.66 -0.07 1.56 16 24 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 25 H 0.39 8.87 7.90 -40.82 -0.32 8.55 16 26 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 27 H 0.10 1.77 7.45 -51.93 -0.39 1.38 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.09 0.92 7.93 -51.93 -0.41 0.51 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.33 8.10 -51.93 -0.42 0.90 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -30.87 337.84 -8.21 -39.08 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.53 Total: 7.82 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.91 Total: 4.14 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.02 Total: -46.11 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: 0.18 Total: -25.22 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.87 -8.21 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336204868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.684 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds