Wall clock time and date at job start Tue Mar 31 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 119.99798 * 2 1 4 4 H 1.48500 * 109.47165 * 239.99636 * 3 2 1 5 5 H 1.48500 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47163 * 119.99354 * 3 2 1 7 7 C 1.38946 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00178 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00173 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00144 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99886 * 179.97438 * 10 9 7 13 13 C 1.53497 * 114.20506 * 180.02562 * 12 10 9 14 14 N 1.47065 * 87.98618 * 139.65477 * 13 12 10 15 15 C 1.34776 * 136.05602 * 152.84465 * 14 13 12 16 16 O 1.21282 * 120.00350 * 5.42523 * 15 14 13 17 17 C 1.50698 * 119.99895 * 185.43111 * 15 14 13 18 18 C 1.52997 * 109.47232 * 88.22067 * 17 15 14 19 19 C 1.53005 * 109.46829 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.47454 * 299.99879 * 19 18 17 21 21 C 1.53004 * 109.46989 * 59.99952 * 20 19 18 22 22 C 1.53001 * 109.47158 * 299.99952 * 21 20 19 23 23 C 1.47062 * 87.88357 * 333.10199 * 14 13 12 24 24 H 0.96999 * 120.00100 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00036 * 359.97438 * 9 7 2 26 26 H 1.08998 * 113.28466 * 46.93764 * 12 10 9 27 27 H 1.09007 * 113.46749 * 24.87609 * 13 12 10 28 28 H 1.08996 * 113.46784 * 254.43904 * 13 12 10 29 29 H 1.09001 * 109.47174 * 328.21590 * 17 15 14 30 30 H 1.08995 * 109.47043 * 299.99786 * 18 17 15 31 31 H 1.08997 * 109.47078 * 60.00330 * 18 17 15 32 32 H 1.09010 * 109.46886 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.46994 * 60.00311 * 19 18 17 34 34 H 1.09008 * 109.47184 * 300.00600 * 20 19 18 35 35 H 1.08997 * 109.47653 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.46897 * 180.02562 * 21 20 19 37 37 H 1.08996 * 109.46528 * 60.00637 * 21 20 19 38 38 H 1.08997 * 109.47220 * 299.99762 * 22 21 20 39 39 H 1.09002 * 109.46655 * 179.97438 * 22 21 20 40 40 H 1.09001 * 113.46615 * 141.68173 * 23 14 13 41 41 H 1.09002 * 113.46684 * 272.11556 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 6 2.1417 -6.1079 0.0017 14 7 1.2029 -6.7208 0.9535 15 6 0.8276 -7.9745 1.2755 16 8 1.3904 -8.9240 0.7728 17 6 -0.2914 -8.1967 2.2600 18 6 -1.6282 -8.2201 1.5161 19 6 -2.7642 -8.4462 2.5157 20 6 -2.5555 -9.7823 3.2313 21 6 -1.2187 -9.7589 3.9753 22 6 -0.0826 -9.5328 2.9757 23 6 0.8491 -5.3632 1.3946 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3907 0.0005 26 1 0.4362 -4.8944 -0.7300 27 1 3.1314 -5.9293 0.4222 28 1 2.1780 -6.6173 -0.9612 29 1 -0.2970 -7.3890 2.9920 30 1 -1.7767 -7.2684 1.0059 31 1 -1.6225 -9.0278 0.7842 32 1 -3.7166 -8.4634 1.9856 33 1 -2.7700 -7.6388 3.2479 34 1 -2.5496 -10.5897 2.4990 35 1 -3.3650 -9.9436 3.9431 36 1 -1.0697 -10.7110 4.4848 37 1 -1.2246 -8.9516 4.7075 38 1 -0.0768 -10.3402 2.2435 39 1 0.8697 -9.5157 3.5058 40 1 -0.2116 -5.2407 1.6138 41 1 1.4909 -4.9842 2.1900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336204868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:17 Heat of formation + Delta-G solvation = -82.328440 kcal Electronic energy + Delta-G solvation = -21883.904975 eV Core-core repulsion = 18569.979215 eV Total energy + Delta-G solvation = -3313.925760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89943 -40.40899 -38.92047 -38.03671 -35.96640 -33.29095 -32.52696 -31.67549 -30.72061 -27.45599 -26.97388 -25.04818 -23.57462 -23.30223 -20.93830 -20.66407 -19.93261 -19.78918 -18.35036 -17.98393 -17.22267 -16.77566 -16.15609 -15.82183 -15.77912 -15.56131 -15.05498 -14.98655 -14.69102 -14.50112 -13.97976 -13.61762 -13.52898 -13.44806 -13.26960 -13.11806 -13.01745 -12.89280 -12.42546 -12.25537 -12.12972 -12.04398 -11.75281 -11.61062 -11.50207 -11.36006 -11.02315 -10.75720 -10.36967 -10.02729 -9.82332 -8.46591 -5.95180 1.40163 1.44958 1.48365 1.54515 1.70541 1.95370 2.31582 3.09293 3.20713 3.26338 3.49659 3.70827 3.78576 3.89659 4.10861 4.17588 4.25414 4.31157 4.37271 4.44653 4.47158 4.51254 4.54581 4.58764 4.60449 4.68394 4.71111 4.96204 5.05871 5.11232 5.17148 5.25627 5.26171 5.35345 5.39725 5.42808 5.56696 5.98818 6.57276 6.63601 7.02010 7.11442 7.54268 8.08610 8.69738 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027718 B = 0.003409 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.928321 B = 8210.748386 C = 8877.710741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.006 4.006 3 Si 0.989 3.011 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.558 5.558 10 C 0.452 3.548 11 O -0.633 6.633 12 C -0.129 4.129 13 C 0.122 3.878 14 N -0.644 5.644 15 C 0.541 3.459 16 O -0.587 6.587 17 C -0.092 4.092 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.101 4.101 23 C 0.127 3.873 24 H 0.279 0.721 25 H 0.400 0.600 26 H 0.139 0.861 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.120 0.880 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 -13.915 7.401 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.207 4.207 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.193 5.193 10 C 0.239 3.761 11 O -0.521 6.521 12 C -0.151 4.151 13 C -0.001 4.001 14 N -0.378 5.378 15 C 0.333 3.667 16 O -0.468 6.468 17 C -0.113 4.113 18 C -0.143 4.143 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.140 4.140 23 C 0.005 3.995 24 H 0.089 0.911 25 H 0.234 0.766 26 H 0.157 0.843 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.138 0.862 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.091 -14.470 7.203 18.545 hybrid contribution 0.484 0.910 -0.366 1.094 sum -8.607 -13.559 6.838 17.456 Atomic orbital electron populations 1.69646 1.06699 1.29504 1.49500 1.25973 0.96483 1.02227 0.95995 0.85046 0.77854 0.76896 0.78931 1.19919 1.19539 1.19655 1.19651 0.92809 0.83968 1.50285 0.90207 1.41891 1.09493 1.04444 1.63495 1.20170 0.87621 0.85425 0.82932 1.90516 1.15925 1.87874 1.57789 1.22801 1.00145 0.91051 1.01115 1.22732 0.94181 0.89131 0.94053 1.49741 1.42349 1.05226 1.40514 1.21043 0.84163 0.79524 0.81947 1.90656 1.58184 1.41363 1.56561 1.21335 0.92720 1.01092 0.96143 1.21470 0.92126 1.02462 0.98223 1.21525 0.97341 0.98206 0.97995 1.21581 0.97280 0.97440 0.99589 1.21531 0.93663 1.02678 0.97215 1.21396 0.99251 0.95048 0.98257 1.22919 1.03822 0.77693 0.95111 0.91148 0.76559 0.84318 0.90204 0.90207 0.87539 0.90922 0.92546 0.90546 0.90673 0.92430 0.90358 0.90874 0.90872 0.92466 0.92675 0.86240 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.50 13.05 21.66 0.28 -46.21 16 2 C -0.01 -0.30 5.50 84.92 0.47 0.17 16 3 Si 0.99 40.98 29.55 68.60 2.03 43.01 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.34 -18.15 9.68 84.04 0.81 -17.34 16 8 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 9 N -0.56 -26.52 5.29 -306.99 -1.62 -28.14 16 10 C 0.45 19.90 7.35 87.66 0.64 20.54 16 11 O -0.63 -33.37 15.52 -3.07 -0.05 -33.42 16 12 C -0.13 -4.06 4.48 -11.29 -0.05 -4.11 16 13 C 0.12 3.99 7.97 83.17 0.66 4.65 16 14 N -0.64 -18.59 3.69 -858.94 -3.17 -21.76 16 15 C 0.54 16.00 7.15 87.66 0.63 16.63 16 16 O -0.59 -22.10 16.92 -3.04 -0.05 -22.15 16 17 C -0.09 -1.91 2.40 -11.54 -0.03 -1.94 16 18 C -0.10 -1.85 5.19 30.60 0.16 -1.69 16 19 C -0.11 -1.46 5.92 30.59 0.18 -1.28 16 20 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 21 C -0.11 -1.58 5.92 30.60 0.18 -1.40 16 22 C -0.10 -2.03 4.78 30.60 0.15 -1.89 16 23 C 0.13 3.28 7.82 83.08 0.65 3.93 16 24 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 25 H 0.40 17.76 7.90 -92.71 -0.73 17.02 16 26 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 27 H 0.08 2.93 7.45 -2.38 -0.02 2.91 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.11 1.87 7.93 -2.39 -0.02 1.85 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.34 7.86 -2.39 -0.02 1.32 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.09 2.38 8.10 -2.39 -0.02 2.36 16 Total: -1.00 -67.51 337.84 2.34 -65.17 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.29 Total: 28.58 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 4.63 Total: 14.94 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -4.51 Total: -96.12 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.10 Total: -55.58 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -67.51 2.34 -65.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336204868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.161 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds