Wall clock time and date at job start Tue Mar 31 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86795 * 119.99993 * 2 1 4 4 H 1.48510 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47077 * 299.99454 * 3 2 1 6 6 H 1.48497 * 109.47294 * 60.00290 * 3 2 1 7 7 C 1.38953 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99564 * 160.30621 * 7 2 1 9 9 N 1.37101 * 120.00076 * 340.30161 * 7 2 1 10 10 C 1.34770 * 120.00052 * 302.48387 * 9 7 2 11 11 O 1.21297 * 119.99690 * 184.70866 * 10 9 7 12 12 C 1.50699 * 120.00342 * 4.70130 * 10 9 7 13 13 H 1.09004 * 109.66486 * 36.38556 * 12 10 9 14 14 C 1.53348 * 109.67441 * 156.87548 * 12 10 9 15 15 C 1.52918 * 108.67562 * 187.26681 * 14 12 10 16 16 N 1.45754 * 110.48741 * 309.25210 * 15 14 12 17 17 C 1.33354 * 124.10936 * 19.35313 * 16 15 14 18 18 O 1.21281 * 118.25053 * 177.49325 * 17 16 15 19 19 C 1.50196 * 123.49077 * 357.21851 * 17 16 15 20 20 C 1.46501 * 119.99542 * 122.48307 * 9 7 2 21 21 C 1.54266 * 110.03576 * 59.75111 * 20 9 7 22 22 C 1.54888 * 104.19339 * 217.10668 * 21 20 9 23 23 C 1.54885 * 102.75509 * 37.93999 * 22 21 20 24 24 C 1.53873 * 110.03258 * 302.58230 * 20 9 7 25 25 H 0.96999 * 119.99820 * 5.09634 * 1 2 3 26 26 H 1.08999 * 109.59969 * 67.50981 * 14 12 10 27 27 H 1.08998 * 109.60202 * 307.02829 * 14 12 10 28 28 H 1.08997 * 109.30186 * 188.93531 * 15 14 12 29 29 H 1.09006 * 109.13012 * 69.45492 * 15 14 12 30 30 H 0.97002 * 117.94284 * 199.07508 * 16 15 14 31 31 H 1.08996 * 109.60415 * 257.84891 * 19 17 16 32 32 H 1.09000 * 109.18768 * 138.03000 * 19 17 16 33 33 H 1.08999 * 110.01654 * 181.19175 * 20 9 7 34 34 H 1.09003 * 110.48022 * 335.77952 * 21 20 9 35 35 H 1.08990 * 110.48522 * 98.42391 * 21 20 9 36 36 H 1.09004 * 110.75173 * 279.62085 * 22 21 20 37 37 H 1.09002 * 110.75015 * 156.26109 * 22 21 20 38 38 H 1.08992 * 110.49101 * 203.37956 * 23 22 21 39 39 H 1.08999 * 110.48474 * 80.73505 * 23 22 21 40 40 H 1.09001 * 110.03208 * 238.57503 * 24 20 9 41 41 H 1.09001 * 110.03508 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0414 -1.2309 -0.3146 9 7 1.3834 -2.3558 0.4013 10 6 0.8365 -2.4332 1.6306 11 8 0.3589 -3.4791 2.0171 12 6 0.8184 -1.2205 2.5250 13 1 0.6554 -0.3249 1.9255 14 6 -0.3039 -1.3596 3.5608 15 6 -0.4208 -0.0464 4.3355 16 7 0.8839 0.3690 4.8351 17 6 2.0453 -0.0746 4.3527 18 8 3.0702 0.3775 4.8176 19 6 2.1517 -1.1085 3.2685 20 6 1.3097 -3.5030 -0.5069 21 6 2.7305 -3.9683 -0.8870 22 6 2.6082 -4.3868 -2.3733 23 6 1.6392 -3.3245 -2.9490 24 6 0.6158 -3.0936 -1.8179 25 1 -0.4850 0.8367 -0.0746 26 1 -0.0674 -2.1707 4.2494 27 1 -1.2454 -1.5702 3.0536 28 1 -1.1015 -0.1831 5.1756 29 1 -0.8154 0.7248 3.6738 30 1 0.9090 1.0114 5.5615 31 1 2.4039 -2.0739 3.7072 32 1 2.9331 -0.8139 2.5680 33 1 0.7629 -4.3187 -0.0340 34 1 3.4418 -3.1495 -0.7785 35 1 3.0300 -4.8187 -0.2746 36 1 2.1814 -5.3861 -2.4593 37 1 3.5772 -4.3354 -2.8699 38 1 1.1422 -3.7051 -3.8412 39 1 2.1743 -2.4018 -3.1735 40 1 -0.2673 -3.7113 -1.9816 41 1 0.3343 -2.0414 -1.7787 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336352752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:26 Heat of formation + Delta-G solvation = -82.441960 kcal Electronic energy + Delta-G solvation = -23751.097264 eV Core-core repulsion = 20437.166581 eV Total energy + Delta-G solvation = -3313.930683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.02004 -38.81032 -36.91242 -35.56991 -34.27236 -32.30670 -31.45051 -29.13847 -27.92918 -27.14896 -25.06642 -24.14830 -22.55687 -20.12668 -19.67619 -19.26395 -18.49205 -17.04310 -16.57239 -15.83941 -15.55315 -15.33560 -14.81184 -14.58631 -14.31608 -13.88046 -13.70189 -13.35245 -12.88291 -12.82225 -12.61762 -12.52943 -11.67953 -11.43058 -11.34447 -11.22980 -11.11626 -10.83533 -10.66519 -10.48802 -10.43239 -10.32431 -10.25587 -10.22715 -9.90551 -9.66015 -9.54005 -8.82295 -8.72956 -8.21159 -7.27562 -6.50776 -4.33628 3.04593 3.07234 3.17978 3.21724 3.67537 3.91788 4.05712 4.65179 4.75381 5.14257 5.22760 5.33209 5.38251 5.44181 5.59104 5.63114 5.82983 5.91458 6.04781 6.14124 6.20998 6.25433 6.32549 6.37141 6.38719 6.44909 6.50695 6.54579 6.58757 6.73529 6.76351 6.96969 7.06844 7.10709 7.11782 7.33645 7.39956 7.67845 8.01345 8.55389 8.59814 8.83581 9.52115 9.95315 10.51912 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.007446 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.164384 B = 3759.449212 C = 4358.643840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.337 4.337 8 H 0.083 0.917 9 N -0.445 5.445 10 C 0.523 3.477 11 O -0.609 6.609 12 C -0.109 4.109 13 H 0.134 0.866 14 C -0.113 4.113 15 C 0.112 3.888 16 N -0.721 5.721 17 C 0.527 3.473 18 O -0.571 6.571 19 C -0.119 4.119 20 C 0.134 3.866 21 C -0.128 4.128 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.125 4.125 25 H 0.271 0.729 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.392 0.608 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -0.725 0.695 1.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.149 4.149 3 Si 0.716 3.284 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.465 4.465 8 H 0.101 0.899 9 N -0.164 5.164 10 C 0.313 3.687 11 O -0.495 6.495 12 C -0.130 4.130 13 H 0.151 0.849 14 C -0.151 4.151 15 C -0.012 4.012 16 N -0.373 5.373 17 C 0.315 3.685 18 O -0.450 6.450 19 C -0.159 4.159 20 C 0.029 3.971 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.692 -1.060 0.946 1.580 hybrid contribution 0.146 1.251 0.022 1.259 sum -0.547 0.191 0.968 1.128 Atomic orbital electron populations 1.69970 1.05955 1.28036 1.45039 1.25538 0.95107 0.99802 0.94451 0.86416 0.81039 0.82515 0.78382 1.18622 1.20413 1.20059 1.19133 0.95633 0.83543 1.48183 0.89931 1.43366 1.51160 1.11942 1.09902 1.20120 0.78560 0.87875 0.82162 1.90500 1.51779 1.31778 1.75410 1.21568 0.92978 1.02562 0.95897 0.84904 1.21648 1.00550 0.95332 0.97610 1.21434 0.83652 0.97775 0.98332 1.45482 1.06384 1.46726 1.38688 1.20382 0.82599 0.82427 0.83063 1.90689 1.34295 1.59129 1.60934 1.21513 1.00401 0.97978 0.95986 1.21585 0.94503 0.90280 0.90683 1.22645 0.98737 1.00332 0.94955 1.22427 0.98793 0.98361 0.96346 1.22266 0.97255 0.98520 0.97389 1.22385 0.96534 1.03897 0.93558 0.91835 0.91333 0.89825 0.90995 0.91711 0.77359 0.88936 0.87208 0.90605 0.90578 0.92901 0.92398 0.92509 0.93147 0.91719 0.93662 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.28 11.81 55.50 0.66 -19.63 16 2 C 0.06 1.31 3.25 -17.47 -0.06 1.26 16 3 Si 0.89 18.63 29.60 -169.99 -5.03 13.60 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.34 -7.76 6.46 -14.93 -0.10 -7.86 16 8 H 0.08 1.91 6.91 -52.49 -0.36 1.55 16 9 N -0.44 -10.24 2.32 -106.54 -0.25 -10.49 16 10 C 0.52 12.36 6.37 -10.99 -0.07 12.29 16 11 O -0.61 -15.57 15.59 5.54 0.09 -15.48 16 12 C -0.11 -2.26 1.72 -91.56 -0.16 -2.42 16 13 H 0.13 2.97 4.02 -51.93 -0.21 2.76 16 14 C -0.11 -2.01 4.71 -26.59 -0.13 -2.14 16 15 C 0.11 1.62 7.17 -4.49 -0.03 1.58 16 16 N -0.72 -11.39 5.45 -61.38 -0.33 -11.73 16 17 C 0.53 10.17 7.71 -11.86 -0.09 10.08 16 18 O -0.57 -12.57 17.78 5.56 0.10 -12.47 16 19 C -0.12 -2.35 5.24 -28.09 -0.15 -2.50 16 20 C 0.13 2.82 3.29 -66.81 -0.22 2.60 16 21 C -0.13 -2.33 6.42 -25.07 -0.16 -2.49 16 22 C -0.12 -1.88 6.91 -24.74 -0.17 -2.05 16 23 C -0.12 -1.93 6.83 -25.07 -0.17 -2.10 16 24 C -0.13 -2.48 6.26 -25.61 -0.16 -2.64 16 25 H 0.27 6.16 8.32 -40.82 -0.34 5.82 16 26 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.39 5.31 8.80 -40.82 -0.36 4.96 16 31 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 32 H 0.11 2.27 7.60 -51.93 -0.39 1.88 16 33 H 0.08 1.71 6.96 -51.93 -0.36 1.35 16 34 H 0.08 1.46 6.53 -51.93 -0.34 1.12 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 2.19 7.16 -51.93 -0.37 1.82 16 LS Contribution 321.98 15.07 4.85 4.85 Total: -1.00 -27.89 321.98 -7.76 -35.65 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -6.18 Total: 12.09 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.66 Total: 3.61 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.07 Total: -41.85 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: 0.19 Total: -27.96 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.89 -7.76 -35.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336352752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.795 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds