Wall clock time and date at job start Tue Mar 31 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86795 * 119.99993 * 2 1 4 4 H 1.48510 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47077 * 299.99454 * 3 2 1 6 6 H 1.48497 * 109.47294 * 60.00290 * 3 2 1 7 7 C 1.38953 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99564 * 160.30621 * 7 2 1 9 9 N 1.37101 * 120.00076 * 340.30161 * 7 2 1 10 10 C 1.34770 * 120.00052 * 302.48387 * 9 7 2 11 11 O 1.21297 * 119.99690 * 184.70866 * 10 9 7 12 12 C 1.50699 * 120.00342 * 4.70130 * 10 9 7 13 13 H 1.09004 * 109.66486 * 36.38556 * 12 10 9 14 14 C 1.53348 * 109.67441 * 156.87548 * 12 10 9 15 15 C 1.52918 * 108.67562 * 187.26681 * 14 12 10 16 16 N 1.45754 * 110.48741 * 309.25210 * 15 14 12 17 17 C 1.33354 * 124.10936 * 19.35313 * 16 15 14 18 18 O 1.21281 * 118.25053 * 177.49325 * 17 16 15 19 19 C 1.50196 * 123.49077 * 357.21851 * 17 16 15 20 20 C 1.46501 * 119.99542 * 122.48307 * 9 7 2 21 21 C 1.54266 * 110.03576 * 59.75111 * 20 9 7 22 22 C 1.54888 * 104.19339 * 217.10668 * 21 20 9 23 23 C 1.54885 * 102.75509 * 37.93999 * 22 21 20 24 24 C 1.53873 * 110.03258 * 302.58230 * 20 9 7 25 25 H 0.96999 * 119.99820 * 5.09634 * 1 2 3 26 26 H 1.08999 * 109.59969 * 67.50981 * 14 12 10 27 27 H 1.08998 * 109.60202 * 307.02829 * 14 12 10 28 28 H 1.08997 * 109.30186 * 188.93531 * 15 14 12 29 29 H 1.09006 * 109.13012 * 69.45492 * 15 14 12 30 30 H 0.97002 * 117.94284 * 199.07508 * 16 15 14 31 31 H 1.08996 * 109.60415 * 257.84891 * 19 17 16 32 32 H 1.09000 * 109.18768 * 138.03000 * 19 17 16 33 33 H 1.08999 * 110.01654 * 181.19175 * 20 9 7 34 34 H 1.09003 * 110.48022 * 335.77952 * 21 20 9 35 35 H 1.08990 * 110.48522 * 98.42391 * 21 20 9 36 36 H 1.09004 * 110.75173 * 279.62085 * 22 21 20 37 37 H 1.09002 * 110.75015 * 156.26109 * 22 21 20 38 38 H 1.08992 * 110.49101 * 203.37956 * 23 22 21 39 39 H 1.08999 * 110.48474 * 80.73505 * 23 22 21 40 40 H 1.09001 * 110.03208 * 238.57503 * 24 20 9 41 41 H 1.09001 * 110.03508 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0414 -1.2309 -0.3146 9 7 1.3834 -2.3558 0.4013 10 6 0.8365 -2.4332 1.6306 11 8 0.3589 -3.4791 2.0171 12 6 0.8184 -1.2205 2.5250 13 1 0.6554 -0.3249 1.9255 14 6 -0.3039 -1.3596 3.5608 15 6 -0.4208 -0.0464 4.3355 16 7 0.8839 0.3690 4.8351 17 6 2.0453 -0.0746 4.3527 18 8 3.0702 0.3775 4.8176 19 6 2.1517 -1.1085 3.2685 20 6 1.3097 -3.5030 -0.5069 21 6 2.7305 -3.9683 -0.8870 22 6 2.6082 -4.3868 -2.3733 23 6 1.6392 -3.3245 -2.9490 24 6 0.6158 -3.0936 -1.8179 25 1 -0.4850 0.8367 -0.0746 26 1 -0.0674 -2.1707 4.2494 27 1 -1.2454 -1.5702 3.0536 28 1 -1.1015 -0.1831 5.1756 29 1 -0.8154 0.7248 3.6738 30 1 0.9090 1.0114 5.5615 31 1 2.4039 -2.0739 3.7072 32 1 2.9331 -0.8139 2.5680 33 1 0.7629 -4.3187 -0.0340 34 1 3.4418 -3.1495 -0.7785 35 1 3.0300 -4.8187 -0.2746 36 1 2.1814 -5.3861 -2.4593 37 1 3.5772 -4.3354 -2.8699 38 1 1.1422 -3.7051 -3.8412 39 1 2.1743 -2.4018 -3.1735 40 1 -0.2673 -3.7113 -1.9816 41 1 0.3343 -2.0414 -1.7787 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336352752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:26 Heat of formation + Delta-G solvation = -99.451293 kcal Electronic energy + Delta-G solvation = -23751.834844 eV Core-core repulsion = 20437.166581 eV Total energy + Delta-G solvation = -3314.668263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.60568 -40.47326 -38.50475 -37.10882 -36.03649 -33.83298 -33.23464 -30.59318 -29.41156 -28.72390 -26.84491 -25.68733 -24.04108 -21.60817 -21.26536 -20.93113 -20.00283 -18.60835 -18.21591 -17.49039 -17.13340 -16.98620 -16.37640 -16.15968 -15.88868 -15.46257 -15.25980 -14.81713 -14.50489 -14.38399 -14.28309 -14.06244 -13.39431 -13.08361 -12.95018 -12.80652 -12.64153 -12.44144 -12.26640 -12.09218 -11.87638 -11.83752 -11.80290 -11.77720 -11.32821 -11.30574 -11.15481 -10.56630 -10.09697 -10.01766 -9.08778 -8.31134 -6.17949 1.35168 1.46697 1.52776 1.53711 2.09862 2.28636 2.35815 2.94943 2.99124 3.67188 3.88019 3.90468 3.93921 4.00962 4.06566 4.23776 4.43265 4.51383 4.55326 4.66938 4.71355 4.82261 4.85142 4.88553 4.92260 4.94397 4.98876 5.13437 5.18641 5.21794 5.28522 5.43376 5.50479 5.55247 5.60280 5.68119 5.84157 6.22505 6.24577 6.72652 7.01723 7.16179 7.68912 8.13749 8.72675 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.007446 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.164384 B = 3759.449212 C = 4358.643840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.039 3.961 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.342 4.342 8 H 0.080 0.920 9 N -0.448 5.448 10 C 0.507 3.493 11 O -0.638 6.638 12 C -0.106 4.106 13 H 0.120 0.880 14 C -0.111 4.111 15 C 0.118 3.882 16 N -0.706 5.706 17 C 0.527 3.473 18 O -0.602 6.602 19 C -0.114 4.114 20 C 0.121 3.879 21 C -0.124 4.124 22 C -0.109 4.109 23 C -0.109 4.109 24 C -0.121 4.121 25 H 0.274 0.726 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.408 0.592 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 -0.337 0.509 1.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.166 4.166 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.470 4.470 8 H 0.098 0.902 9 N -0.166 5.166 10 C 0.297 3.703 11 O -0.526 6.526 12 C -0.127 4.127 13 H 0.138 0.862 14 C -0.149 4.149 15 C -0.006 4.006 16 N -0.357 5.357 17 C 0.315 3.685 18 O -0.484 6.484 19 C -0.154 4.154 20 C 0.017 3.983 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.160 4.160 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.245 0.755 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.748 -0.659 0.747 1.245 hybrid contribution 0.093 1.081 0.056 1.086 sum -0.655 0.422 0.802 1.118 Atomic orbital electron populations 1.70024 1.06809 1.28660 1.45405 1.25889 0.95411 1.01319 0.93952 0.85739 0.80083 0.80064 0.78094 1.18740 1.19958 1.20532 1.19163 0.95553 0.83889 1.48434 0.90247 1.43547 1.50536 1.12449 1.10092 1.20699 0.78419 0.88468 0.82699 1.90463 1.53181 1.32958 1.76013 1.21512 0.94592 1.00472 0.96151 0.86218 1.21617 0.98836 0.97423 0.97042 1.21550 0.83420 0.95830 0.99776 1.45358 1.05876 1.46104 1.38325 1.20180 0.83209 0.82283 0.82838 1.90675 1.35565 1.60250 1.61954 1.21405 0.99492 0.98480 0.96038 1.21795 0.96419 0.89228 0.90820 1.22584 0.96272 0.99996 0.97366 1.22400 0.99834 0.98630 0.93850 1.22220 0.96592 0.98853 0.97048 1.22292 0.97666 1.01679 0.94347 0.91567 0.91448 0.90703 0.86439 0.91092 0.75525 0.88839 0.88605 0.92741 0.91785 0.92423 0.90702 0.90128 0.90574 0.92409 0.93280 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -41.68 11.81 21.66 0.26 -41.42 16 2 C 0.04 1.80 3.25 84.93 0.28 2.08 16 3 Si 0.94 37.96 29.60 68.60 2.03 39.99 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.34 -16.00 6.46 84.04 0.54 -15.46 16 8 H 0.08 3.73 6.91 -2.91 -0.02 3.71 16 9 N -0.45 -21.12 2.32 -609.38 -1.41 -22.54 16 10 C 0.51 24.52 6.37 87.66 0.56 25.08 16 11 O -0.64 -33.54 15.59 -3.08 -0.05 -33.59 16 12 C -0.11 -4.43 1.72 -11.40 -0.02 -4.45 16 13 H 0.12 5.37 4.02 -2.39 -0.01 5.36 16 14 C -0.11 -3.85 4.71 30.68 0.14 -3.71 16 15 C 0.12 3.06 7.17 86.49 0.62 3.68 16 16 N -0.71 -20.67 5.45 -467.29 -2.55 -23.22 16 17 C 0.53 19.86 7.71 87.72 0.68 20.54 16 18 O -0.60 -26.12 17.78 -3.03 -0.05 -26.17 16 19 C -0.11 -4.54 5.24 29.71 0.16 -4.39 16 20 C 0.12 5.19 3.29 45.71 0.15 5.34 16 21 C -0.12 -4.43 6.42 31.67 0.20 -4.23 16 22 C -0.11 -3.11 6.91 31.88 0.22 -2.89 16 23 C -0.11 -3.43 6.83 31.67 0.22 -3.22 16 24 C -0.12 -4.81 6.26 31.32 0.20 -4.61 16 25 H 0.27 12.42 8.32 -92.71 -0.77 11.65 16 26 H 0.07 2.34 8.10 -2.39 -0.02 2.32 16 27 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.41 9.87 8.80 -92.71 -0.82 9.05 16 31 H 0.09 3.65 8.09 -2.39 -0.02 3.64 16 32 H 0.10 4.05 7.60 -2.39 -0.02 4.03 16 33 H 0.05 2.53 6.96 -2.39 -0.02 2.52 16 34 H 0.06 2.44 6.53 -2.39 -0.02 2.42 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 2.92 7.16 -2.39 -0.02 2.91 16 Total: -1.00 -60.85 321.98 2.39 -58.45 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.22 Total: 34.71 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 3.94 Total: 13.77 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -3.70 Total: -87.17 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: -0.10 Total: -59.76 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -60.85 2.39 -58.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336352752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.997 kcal (2) G-P(sol) polarization free energy of solvation -60.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds