Wall clock time and date at job start Tue Mar 31 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86803 * 120.00019 * 2 1 4 4 H 1.48496 * 109.46778 * 274.97965 * 3 2 1 5 5 H 1.48500 * 109.47139 * 34.97980 * 3 2 1 6 6 H 1.48500 * 109.47084 * 154.97931 * 3 2 1 7 7 C 1.40049 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99728 * 186.15081 * 7 2 1 9 9 C 1.46372 * 120.00145 * 6.15641 * 7 2 1 10 10 O 1.21682 * 119.99867 * 353.93709 * 9 7 2 11 11 N 1.34781 * 119.99933 * 173.93509 * 9 7 2 12 12 C 1.46494 * 119.99783 * 179.72286 * 11 9 7 13 13 H 1.09000 * 110.86123 * 325.70269 * 12 11 9 14 14 C 1.54628 * 110.96954 * 89.49398 * 12 11 9 15 15 C 1.51287 * 104.19681 * 142.91711 * 14 12 11 16 16 O 1.21272 * 124.94324 * 163.78240 * 15 14 12 17 17 N 1.34426 * 110.11408 * 343.74852 * 15 14 12 18 18 C 1.46499 * 124.34776 * 179.59082 * 17 15 14 19 19 C 1.52994 * 109.47087 * 59.97284 * 18 17 15 20 20 C 1.53001 * 109.47353 * 179.97438 * 19 18 17 21 21 C 1.53008 * 109.46713 * 59.99701 * 20 19 18 22 22 C 1.52994 * 109.47455 * 300.00236 * 21 20 19 23 23 C 1.52997 * 109.46994 * 299.97291 * 18 17 15 24 24 C 1.46825 * 111.31651 * 359.62118 * 17 15 14 25 25 H 0.96999 * 120.00095 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99855 * 0.02562 * 11 9 7 27 27 H 1.09003 * 110.48202 * 261.59204 * 14 12 11 28 28 H 1.08996 * 110.48840 * 24.10295 * 14 12 11 29 29 H 1.08998 * 109.46596 * 179.97438 * 18 17 15 30 30 H 1.09003 * 109.47542 * 299.99851 * 19 18 17 31 31 H 1.09004 * 109.47378 * 59.99861 * 19 18 17 32 32 H 1.09003 * 109.46894 * 300.00516 * 20 19 18 33 33 H 1.08999 * 109.47456 * 179.97438 * 20 19 18 34 34 H 1.09001 * 109.46758 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.46775 * 60.00742 * 21 20 19 36 36 H 1.08994 * 109.47305 * 300.00143 * 22 21 20 37 37 H 1.08993 * 109.47018 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.47124 * 300.00005 * 23 18 17 39 39 H 1.08994 * 109.47308 * 60.00310 * 23 18 17 40 40 H 1.09001 * 110.23951 * 257.98657 * 24 17 15 41 41 H 1.09001 * 110.28290 * 135.96780 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1071 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5869 1.4121 0.5922 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1008 9 6 1.2814 -2.4769 -0.1348 10 8 0.0646 -2.4828 -0.1369 11 7 1.9611 -3.6343 -0.2573 12 6 1.2349 -4.9000 -0.3867 13 1 0.3135 -4.8801 0.1953 14 6 0.9451 -5.2225 -1.8709 15 6 1.1065 -6.7239 -1.9627 16 8 0.7011 -7.4116 -2.8757 17 7 1.7653 -7.1848 -0.8854 18 6 2.0832 -8.5957 -0.6520 19 6 2.9573 -9.1172 -1.7942 20 6 3.2899 -10.5906 -1.5502 21 6 1.9943 -11.4022 -1.4878 22 6 1.1202 -10.8807 -0.3456 23 6 0.7875 -9.4069 -0.5901 24 6 2.1249 -6.0928 0.0279 25 1 -0.4850 0.8400 -0.0004 26 1 2.9311 -3.6296 -0.2553 27 1 -0.0721 -4.9314 -2.1329 28 1 1.6636 -4.7193 -2.5180 29 1 2.6200 -8.6959 0.2913 30 1 2.4205 -9.0170 -2.7376 31 1 3.8805 -8.5393 -1.8384 32 1 3.8269 -10.6904 -0.6069 33 1 3.9122 -10.9623 -2.3642 34 1 2.2312 -12.4518 -1.3135 35 1 1.4573 -11.3024 -2.4311 36 1 1.6572 -10.9805 0.5976 37 1 0.1971 -11.4586 -0.3015 38 1 0.1647 -9.0353 0.2237 39 1 0.2506 -9.3067 -1.5334 40 1 3.1778 -5.8359 -0.0876 41 1 1.9165 -6.3785 1.0589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336609340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:03 Heat of formation + Delta-G solvation = -92.390341 kcal Electronic energy + Delta-G solvation = -22230.006015 eV Core-core repulsion = 18915.643938 eV Total energy + Delta-G solvation = -3314.362077 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57674 -38.13638 -37.32495 -35.85369 -33.41548 -32.42701 -30.96840 -30.90730 -28.35965 -27.24517 -25.89449 -22.88598 -22.74628 -21.65363 -20.20287 -19.73387 -18.78788 -17.38117 -16.68752 -16.09319 -15.39337 -15.30459 -14.92511 -14.35684 -14.23065 -14.01706 -13.96661 -13.64764 -13.34779 -13.12066 -12.55518 -12.46728 -12.37625 -12.33454 -12.14657 -11.61271 -11.30569 -11.23044 -11.16292 -10.95686 -10.83655 -10.72263 -10.53676 -10.43801 -10.38625 -10.26929 -9.44343 -8.90816 -8.56483 -7.73491 -7.68338 -6.26652 -4.71546 2.83562 3.03733 3.10691 3.18327 3.21314 4.04114 4.39711 4.48353 4.59649 4.60952 4.74804 4.80881 4.89828 5.07657 5.12896 5.20639 5.31278 5.34953 5.36688 5.43290 5.49421 5.58192 5.63779 5.78306 5.83427 5.86802 5.90344 5.95007 6.05026 6.10007 6.19054 6.27970 6.35835 6.45430 6.74923 7.27870 7.37531 7.78757 7.94606 8.23800 8.40596 8.95817 9.39720 10.51022 10.68861 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044713 B = 0.003315 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.068567 B = 8445.081863 C = 8573.162719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.755 5.755 12 C 0.152 3.848 13 H 0.098 0.902 14 C -0.168 4.168 15 C 0.524 3.476 16 O -0.538 6.538 17 N -0.618 5.618 18 C 0.162 3.838 19 C -0.135 4.135 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.136 4.136 24 C 0.097 3.903 25 H 0.269 0.731 26 H 0.383 0.617 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 -17.519 0.478 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.459 6.459 11 N -0.411 5.411 12 C 0.044 3.956 13 H 0.116 0.884 14 C -0.210 4.210 15 C 0.313 3.687 16 O -0.415 6.415 17 N -0.352 5.352 18 C 0.060 3.940 19 C -0.173 4.173 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.174 4.174 24 C -0.026 4.026 25 H 0.080 0.920 26 H 0.215 0.785 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.984 -17.816 0.035 18.794 hybrid contribution 0.996 0.879 0.050 1.329 sum 6.980 -16.937 0.085 18.319 Atomic orbital electron populations 1.70014 1.07091 1.27432 1.34840 1.25706 0.94611 1.00356 0.92578 0.86349 0.80206 0.81430 0.78723 1.19784 1.20446 1.18871 1.20860 0.94144 0.89417 1.53752 0.91281 1.18257 0.87197 0.82244 0.76345 1.90614 1.14026 1.86119 1.55150 1.46178 1.08499 1.04828 1.81574 1.21279 0.96234 0.84427 0.93681 0.88427 1.22921 1.05607 0.92009 1.00484 1.21068 0.75967 0.90803 0.80894 1.90638 1.50895 1.64194 1.35791 1.48458 1.57354 1.06575 1.22830 1.20926 0.95665 0.78857 0.98599 1.21939 0.99627 0.95721 1.00008 1.21478 0.97357 0.94651 1.01673 1.21568 0.96275 0.98837 0.99259 1.21484 0.99759 0.95455 0.98469 1.21956 0.97375 0.94608 1.03461 1.22421 0.99591 0.86772 0.93854 0.92003 0.78478 0.88016 0.87802 0.89761 0.90198 0.91923 0.92043 0.91823 0.92107 0.91734 0.92034 0.91785 0.91767 0.90204 0.90973 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.30 11.85 55.55 0.66 -21.64 16 2 C 0.09 2.36 5.49 -17.37 -0.10 2.27 16 3 Si 0.91 19.51 29.56 -169.99 -5.03 14.49 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.54 -14.65 9.53 -35.63 -0.34 -14.99 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.56 14.80 7.74 -12.99 -0.10 14.70 16 10 O -0.58 -17.74 14.74 5.20 0.08 -17.66 16 11 N -0.76 -15.20 5.16 -53.63 -0.28 -15.47 16 12 C 0.15 2.64 3.47 -66.30 -0.23 2.41 16 13 H 0.10 1.92 7.64 -51.93 -0.40 1.52 16 14 C -0.17 -2.93 6.59 -26.74 -0.18 -3.11 16 15 C 0.52 8.70 7.41 -10.85 -0.08 8.62 16 16 O -0.54 -10.25 15.12 5.56 0.08 -10.16 16 17 N -0.62 -8.40 2.83 -164.79 -0.47 -8.87 16 18 C 0.16 1.85 2.74 -67.94 -0.19 1.66 16 19 C -0.13 -1.49 5.21 -26.73 -0.14 -1.63 16 20 C -0.11 -0.99 5.92 -26.73 -0.16 -1.15 16 21 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 22 C -0.11 -1.01 5.93 -26.71 -0.16 -1.17 16 23 C -0.14 -1.55 5.21 -26.71 -0.14 -1.69 16 24 C 0.10 1.26 7.03 -3.08 -0.02 1.24 16 25 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 26 H 0.38 6.61 8.37 -40.82 -0.34 6.27 16 27 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 28 H 0.10 1.80 8.08 -51.93 -0.42 1.38 16 29 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.08 1.10 6.77 -51.93 -0.35 0.75 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.12 6.80 -51.93 -0.35 0.77 16 40 H 0.07 0.83 7.78 -51.93 -0.40 0.43 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -33.23 329.86 -8.42 -41.65 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.46 Total: 6.75 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.98 Total: 5.95 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.09 Total: -45.98 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: 0.16 Total: -27.82 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.23 -8.42 -41.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336609340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.741 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds