Wall clock time and date at job start Tue Mar 31 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86803 * 120.00019 * 2 1 4 4 H 1.48496 * 109.46778 * 274.97965 * 3 2 1 5 5 H 1.48500 * 109.47139 * 34.97980 * 3 2 1 6 6 H 1.48500 * 109.47084 * 154.97931 * 3 2 1 7 7 C 1.40049 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99728 * 186.15081 * 7 2 1 9 9 C 1.46372 * 120.00145 * 6.15641 * 7 2 1 10 10 O 1.21682 * 119.99867 * 353.93709 * 9 7 2 11 11 N 1.34781 * 119.99933 * 173.93509 * 9 7 2 12 12 C 1.46494 * 119.99783 * 179.72286 * 11 9 7 13 13 H 1.09000 * 110.86123 * 325.70269 * 12 11 9 14 14 C 1.54628 * 110.96954 * 89.49398 * 12 11 9 15 15 C 1.51287 * 104.19681 * 142.91711 * 14 12 11 16 16 O 1.21272 * 124.94324 * 163.78240 * 15 14 12 17 17 N 1.34426 * 110.11408 * 343.74852 * 15 14 12 18 18 C 1.46499 * 124.34776 * 179.59082 * 17 15 14 19 19 C 1.52994 * 109.47087 * 59.97284 * 18 17 15 20 20 C 1.53001 * 109.47353 * 179.97438 * 19 18 17 21 21 C 1.53008 * 109.46713 * 59.99701 * 20 19 18 22 22 C 1.52994 * 109.47455 * 300.00236 * 21 20 19 23 23 C 1.52997 * 109.46994 * 299.97291 * 18 17 15 24 24 C 1.46825 * 111.31651 * 359.62118 * 17 15 14 25 25 H 0.96999 * 120.00095 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99855 * 0.02562 * 11 9 7 27 27 H 1.09003 * 110.48202 * 261.59204 * 14 12 11 28 28 H 1.08996 * 110.48840 * 24.10295 * 14 12 11 29 29 H 1.08998 * 109.46596 * 179.97438 * 18 17 15 30 30 H 1.09003 * 109.47542 * 299.99851 * 19 18 17 31 31 H 1.09004 * 109.47378 * 59.99861 * 19 18 17 32 32 H 1.09003 * 109.46894 * 300.00516 * 20 19 18 33 33 H 1.08999 * 109.47456 * 179.97438 * 20 19 18 34 34 H 1.09001 * 109.46758 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.46775 * 60.00742 * 21 20 19 36 36 H 1.08994 * 109.47305 * 300.00143 * 22 21 20 37 37 H 1.08993 * 109.47018 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.47124 * 300.00005 * 23 18 17 39 39 H 1.08994 * 109.47308 * 60.00310 * 23 18 17 40 40 H 1.09001 * 110.23951 * 257.98657 * 24 17 15 41 41 H 1.09001 * 110.28290 * 135.96780 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1071 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5869 1.4121 0.5922 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1008 9 6 1.2814 -2.4769 -0.1348 10 8 0.0646 -2.4828 -0.1369 11 7 1.9611 -3.6343 -0.2573 12 6 1.2349 -4.9000 -0.3867 13 1 0.3135 -4.8801 0.1953 14 6 0.9451 -5.2225 -1.8709 15 6 1.1065 -6.7239 -1.9627 16 8 0.7011 -7.4116 -2.8757 17 7 1.7653 -7.1848 -0.8854 18 6 2.0832 -8.5957 -0.6520 19 6 2.9573 -9.1172 -1.7942 20 6 3.2899 -10.5906 -1.5502 21 6 1.9943 -11.4022 -1.4878 22 6 1.1202 -10.8807 -0.3456 23 6 0.7875 -9.4069 -0.5901 24 6 2.1249 -6.0928 0.0279 25 1 -0.4850 0.8400 -0.0004 26 1 2.9311 -3.6296 -0.2553 27 1 -0.0721 -4.9314 -2.1329 28 1 1.6636 -4.7193 -2.5180 29 1 2.6200 -8.6959 0.2913 30 1 2.4205 -9.0170 -2.7376 31 1 3.8805 -8.5393 -1.8384 32 1 3.8269 -10.6904 -0.6069 33 1 3.9122 -10.9623 -2.3642 34 1 2.2312 -12.4518 -1.3135 35 1 1.4573 -11.3024 -2.4311 36 1 1.6572 -10.9805 0.5976 37 1 0.1971 -11.4586 -0.3015 38 1 0.1647 -9.0353 0.2237 39 1 0.2506 -9.3067 -1.5334 40 1 3.1778 -5.8359 -0.0876 41 1 1.9165 -6.3785 1.0589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336609340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:03 Heat of formation + Delta-G solvation = -115.236774 kcal Electronic energy + Delta-G solvation = -22230.996710 eV Core-core repulsion = 18915.643938 eV Total energy + Delta-G solvation = -3315.352773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82210 -39.50285 -38.75050 -37.38229 -34.98811 -34.38047 -32.37032 -31.69862 -29.57798 -28.80630 -27.61103 -23.85977 -23.54064 -23.19475 -21.53832 -21.08584 -19.96812 -19.24088 -17.85911 -17.68165 -17.13934 -16.54227 -16.03228 -15.74819 -15.49186 -15.22290 -15.14281 -14.84202 -14.69377 -14.32710 -14.28448 -14.04330 -13.56154 -13.29569 -13.11689 -13.04990 -12.84027 -12.68934 -12.55247 -12.37615 -12.23812 -11.99711 -11.98114 -11.58153 -11.26508 -11.19746 -10.92515 -10.76734 -9.85874 -9.69187 -9.51946 -8.28406 -6.82718 1.43194 1.43812 1.48190 1.59648 1.90296 2.26273 2.48686 2.92055 3.43381 3.47655 3.67614 3.80250 3.86194 3.94108 4.03525 4.11756 4.25313 4.28900 4.37294 4.50585 4.55942 4.58081 4.62415 4.63793 4.86183 4.92336 4.97706 5.02508 5.10210 5.20086 5.26156 5.29140 5.35723 5.38185 5.49004 5.68707 5.89871 6.04475 6.20689 6.28115 6.89897 7.10343 7.55178 8.50674 8.68829 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044713 B = 0.003315 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.068567 B = 8445.081863 C = 8573.162719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.542 3.458 10 O -0.629 6.629 11 N -0.738 5.738 12 C 0.150 3.850 13 H 0.070 0.930 14 C -0.167 4.167 15 C 0.525 3.475 16 O -0.567 6.567 17 N -0.607 5.607 18 C 0.156 3.844 19 C -0.131 4.131 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.135 4.135 24 C 0.111 3.889 25 H 0.274 0.726 26 H 0.401 0.599 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.101 0.899 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.425 -18.427 1.941 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.607 4.607 8 H 0.110 0.890 9 C 0.346 3.654 10 O -0.515 6.515 11 N -0.393 5.393 12 C 0.042 3.958 13 H 0.089 0.911 14 C -0.209 4.209 15 C 0.313 3.687 16 O -0.447 6.447 17 N -0.339 5.339 18 C 0.055 3.945 19 C -0.170 4.170 20 C -0.146 4.146 21 C -0.160 4.160 22 C -0.146 4.146 23 C -0.173 4.173 24 C -0.012 4.012 25 H 0.083 0.917 26 H 0.236 0.764 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.119 0.881 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.209 -18.784 1.520 20.975 hybrid contribution -0.012 1.085 -0.419 1.163 sum 9.197 -17.699 1.100 19.976 Atomic orbital electron populations 1.70186 1.09537 1.28900 1.36472 1.26943 0.95437 1.04947 0.91295 0.85033 0.79093 0.75396 0.78950 1.19190 1.20089 1.16838 1.21427 0.95384 0.90043 1.53811 0.89015 1.18570 0.86745 0.84120 0.75928 1.90578 1.16296 1.87306 1.57366 1.45692 1.09266 1.04341 1.80001 1.21271 0.96226 0.85017 0.93273 0.91140 1.22802 1.04072 0.93334 1.00648 1.20812 0.76414 0.90022 0.81484 1.90628 1.52399 1.64489 1.37210 1.48507 1.55957 1.07953 1.21510 1.21257 0.95997 0.76979 1.00263 1.21894 0.99122 0.97796 0.98160 1.21471 0.97512 0.92553 1.03072 1.21580 0.96077 1.00110 0.98222 1.21474 1.00358 0.93285 0.99496 1.21927 0.97114 0.96788 1.01475 1.22409 0.99808 0.84258 0.94739 0.91661 0.76375 0.90715 0.87818 0.86351 0.93661 0.91415 0.89808 0.91203 0.90052 0.93784 0.89817 0.91453 0.92001 0.93732 0.88104 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.21 11.85 21.84 0.26 -48.95 16 2 C 0.03 1.57 5.49 85.30 0.47 2.04 16 3 Si 1.00 39.63 29.56 68.60 2.03 41.66 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16 7 C -0.57 -30.57 9.53 24.83 0.24 -30.33 16 8 H 0.09 4.33 7.85 -2.91 -0.02 4.31 16 9 C 0.54 29.46 7.74 86.36 0.67 30.13 16 10 O -0.63 -40.39 14.74 -4.29 -0.06 -40.45 16 11 N -0.74 -29.44 5.16 -441.81 -2.28 -31.72 16 12 C 0.15 5.21 3.47 46.05 0.16 5.37 16 13 H 0.07 2.87 7.64 -2.39 -0.02 2.86 16 14 C -0.17 -6.03 6.59 30.59 0.20 -5.83 16 15 C 0.52 17.75 7.41 87.90 0.65 18.40 16 16 O -0.57 -22.57 15.12 -3.01 -0.05 -22.62 16 17 N -0.61 -15.60 2.83 -793.88 -2.25 -17.85 16 18 C 0.16 3.19 2.74 44.99 0.12 3.32 16 19 C -0.13 -2.68 5.21 30.59 0.16 -2.52 16 20 C -0.11 -1.57 5.92 30.60 0.18 -1.38 16 21 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 22 C -0.11 -1.66 5.93 30.61 0.18 -1.48 16 23 C -0.13 -2.93 5.21 30.61 0.16 -2.77 16 24 C 0.11 2.58 7.03 86.82 0.61 3.19 16 25 H 0.27 14.91 8.29 -92.71 -0.77 14.14 16 26 H 0.40 13.08 8.37 -92.71 -0.78 12.31 16 27 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.10 3.71 8.08 -2.39 -0.02 3.69 16 29 H 0.12 1.71 8.07 -2.39 -0.02 1.69 16 30 H 0.04 1.25 6.77 -2.39 -0.02 1.24 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.29 6.80 -2.39 -0.02 1.27 16 40 H 0.10 1.89 7.78 -2.39 -0.02 1.87 16 41 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -76.69 329.86 1.88 -74.81 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.25 Total: 28.69 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 3.98 Total: 16.44 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -4.27 Total: -98.52 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -0.11 Total: -63.07 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -76.69 1.88 -74.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336609340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.430 kcal (2) G-P(sol) polarization free energy of solvation -76.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds