Wall clock time and date at job start Tue Mar 31 2020 02:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86807 * 119.99814 * 2 1 4 4 H 1.48504 * 109.46933 * 239.99703 * 3 2 1 5 5 H 1.48495 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47066 * 119.99937 * 3 2 1 7 7 C 1.40048 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.46377 * 119.99872 * 359.97438 * 7 2 1 10 10 O 1.21692 * 119.99959 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00113 * 180.02562 * 9 7 2 12 12 C 1.46497 * 119.99904 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.85756 * 34.29549 * 12 11 9 14 14 C 1.54625 * 110.97093 * 270.50438 * 12 11 9 15 15 C 1.51375 * 104.15212 * 217.06216 * 14 12 11 16 16 O 1.21277 * 124.93655 * 196.29314 * 15 14 12 17 17 N 1.34418 * 110.12313 * 16.25203 * 15 14 12 18 18 C 1.46504 * 124.35008 * 180.42453 * 17 15 14 19 19 C 1.52994 * 109.47172 * 59.97888 * 18 17 15 20 20 C 1.53001 * 109.47411 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.46778 * 60.00114 * 20 19 18 22 22 C 1.52994 * 109.47057 * 300.00104 * 21 20 19 23 23 C 1.53001 * 109.47411 * 60.00284 * 22 21 20 24 24 C 1.46762 * 111.30167 * 0.40735 * 17 15 14 25 25 H 0.96998 * 120.00343 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99913 * 359.97438 * 11 9 7 27 27 H 1.09004 * 110.48744 * 335.72997 * 14 12 11 28 28 H 1.09001 * 110.48768 * 98.36309 * 14 12 11 29 29 H 1.09001 * 109.47044 * 179.97438 * 18 17 15 30 30 H 1.09001 * 109.47515 * 300.00176 * 19 18 17 31 31 H 1.09007 * 109.47195 * 59.99855 * 19 18 17 32 32 H 1.09001 * 109.47012 * 300.00591 * 20 19 18 33 33 H 1.08997 * 109.46983 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.47013 * 180.02562 * 21 20 19 35 35 H 1.09001 * 109.46959 * 60.00445 * 21 20 19 36 36 H 1.09001 * 109.47515 * 300.00001 * 22 21 20 37 37 H 1.09007 * 109.47195 * 180.02562 * 22 21 20 38 38 H 1.09003 * 109.47309 * 179.97438 * 23 22 21 39 39 H 1.09001 * 109.46947 * 59.99961 * 23 22 21 40 40 H 1.08999 * 110.24895 * 223.97813 * 24 17 15 41 41 H 1.09000 * 110.24643 * 101.98010 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0943 1.6965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0026 11 7 1.9491 -3.6477 0.0027 12 6 1.2166 -4.9164 0.0033 13 1 0.2940 -4.8321 -0.5711 14 6 0.9283 -5.3883 1.4473 15 6 1.0819 -6.8929 1.3825 16 8 0.6737 -7.6693 2.2200 17 7 1.7357 -7.2432 0.2615 18 6 2.0451 -8.6240 -0.1178 19 6 0.7447 -9.4178 -0.2587 20 6 1.0678 -10.8597 -0.6554 21 6 1.9427 -11.5015 0.4233 22 6 3.2430 -10.7078 0.5642 23 6 2.9200 -9.2659 0.9609 24 6 2.0993 -6.0647 -0.5340 25 1 -0.4850 0.8400 -0.0004 26 1 2.9190 -3.6476 0.0023 27 1 1.6526 -4.9602 2.1403 28 1 -0.0865 -5.1201 1.7409 29 1 2.5785 -8.6289 -1.0683 30 1 0.2112 -9.4129 0.6918 31 1 0.1215 -8.9607 -1.0274 32 1 1.6011 -10.8642 -1.6060 33 1 0.1413 -11.4250 -0.7562 34 1 2.1732 -12.5287 0.1405 35 1 1.4094 -11.4971 1.3739 36 1 3.7764 -10.7123 -0.3864 37 1 3.8666 -11.1653 1.3323 38 1 3.8465 -8.7005 1.0617 39 1 2.3868 -9.2614 1.9116 40 1 1.8878 -6.2414 -1.5885 41 1 3.1539 -5.8265 -0.3949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336609341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:06 Heat of formation + Delta-G solvation = -92.373893 kcal Electronic energy + Delta-G solvation = -22226.911428 eV Core-core repulsion = 18912.550065 eV Total energy + Delta-G solvation = -3314.361364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57712 -38.13644 -37.32199 -35.85366 -33.41583 -32.42146 -30.96568 -30.90948 -28.36004 -27.24171 -25.89254 -22.88763 -22.74532 -21.65356 -20.20237 -19.73115 -18.78722 -17.38109 -16.68697 -16.09063 -15.39284 -15.30136 -14.92585 -14.35662 -14.23217 -14.01663 -13.96833 -13.64531 -13.34805 -13.12109 -12.55636 -12.45360 -12.37629 -12.33690 -12.13771 -11.61303 -11.30209 -11.23654 -11.16214 -10.93730 -10.83711 -10.71853 -10.53427 -10.43835 -10.38594 -10.30040 -9.44412 -8.90428 -8.56458 -7.73594 -7.68190 -6.25355 -4.71878 2.83570 3.03814 3.12481 3.18008 3.19526 4.04167 4.39975 4.48181 4.59631 4.61089 4.74883 4.80570 4.90311 5.07588 5.13027 5.20632 5.31395 5.34976 5.36662 5.43284 5.49229 5.58477 5.63923 5.79022 5.83528 5.86842 5.90517 5.95112 6.05068 6.09945 6.19039 6.27995 6.35798 6.45460 6.74954 7.27939 7.37167 7.78809 7.94737 8.23194 8.40588 8.95722 9.40005 10.51602 10.69420 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044784 B = 0.003309 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.070791 B = 8460.935703 C = 8596.507104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.756 5.756 12 C 0.152 3.848 13 H 0.098 0.902 14 C -0.168 4.168 15 C 0.524 3.476 16 O -0.538 6.538 17 N -0.618 5.618 18 C 0.162 3.838 19 C -0.136 4.136 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.135 4.135 24 C 0.097 3.903 25 H 0.270 0.730 26 H 0.383 0.617 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 -17.385 -2.297 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.459 6.459 11 N -0.411 5.411 12 C 0.044 3.956 13 H 0.116 0.884 14 C -0.210 4.210 15 C 0.312 3.688 16 O -0.415 6.415 17 N -0.352 5.352 18 C 0.060 3.940 19 C -0.174 4.174 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.173 4.173 24 C -0.026 4.026 25 H 0.081 0.919 26 H 0.215 0.785 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.874 -17.719 -1.892 18.763 hybrid contribution 1.014 0.878 -0.057 1.342 sum 6.888 -16.841 -1.949 18.299 Atomic orbital electron populations 1.69994 1.07065 1.27548 1.34829 1.25704 0.94632 1.00331 0.92592 0.86418 0.79811 0.80977 0.79459 1.19264 1.20552 1.19268 1.20827 0.93593 0.89241 1.54486 0.91364 1.18246 0.87257 0.82246 0.76294 1.90618 1.14007 1.86570 1.54697 1.46170 1.08459 1.04008 1.82452 1.21280 0.96235 0.84434 0.93669 0.88408 1.22942 1.05600 0.91607 1.00856 1.21098 0.75949 0.91341 0.80382 1.90639 1.50687 1.58130 1.42064 1.48440 1.57556 1.06022 1.23178 1.20927 0.95694 0.79538 0.97882 1.21947 0.97349 0.94932 1.03173 1.21477 0.99774 0.95412 0.98502 1.21565 0.96236 0.98576 0.99554 1.21476 0.97345 0.94944 1.01396 1.21939 0.99630 0.95556 1.00164 1.22406 0.99580 0.84827 0.95825 0.91932 0.78495 0.87827 0.87999 0.89760 0.90199 0.91768 0.92042 0.91782 0.92106 0.91733 0.92047 0.91825 0.91919 0.90211 0.90254 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.33 11.83 55.55 0.66 -21.67 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 3 Si 0.91 19.51 29.56 -169.99 -5.02 14.48 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -14.64 9.54 -35.63 -0.34 -14.98 16 8 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 9 C 0.55 14.81 7.75 -12.99 -0.10 14.71 16 10 O -0.58 -17.74 14.71 5.20 0.08 -17.66 16 11 N -0.76 -15.21 5.16 -53.63 -0.28 -15.49 16 12 C 0.15 2.64 3.47 -66.30 -0.23 2.41 16 13 H 0.10 1.92 7.63 -51.93 -0.40 1.53 16 14 C -0.17 -2.92 6.60 -26.70 -0.18 -3.10 16 15 C 0.52 8.69 7.42 -10.81 -0.08 8.61 16 16 O -0.54 -10.24 15.12 5.56 0.08 -10.16 16 17 N -0.62 -8.40 2.83 -164.80 -0.47 -8.87 16 18 C 0.16 1.85 2.74 -67.93 -0.19 1.66 16 19 C -0.14 -1.55 5.21 -26.73 -0.14 -1.69 16 20 C -0.11 -1.01 5.92 -26.73 -0.16 -1.17 16 21 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 22 C -0.11 -0.99 5.92 -26.73 -0.16 -1.15 16 23 C -0.13 -1.49 5.21 -26.73 -0.14 -1.63 16 24 C 0.10 1.26 7.03 -3.12 -0.02 1.24 16 25 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 26 H 0.38 6.61 8.37 -40.82 -0.34 6.27 16 27 H 0.10 1.79 8.08 -51.93 -0.42 1.37 16 28 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 29 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.08 1.12 6.80 -51.93 -0.35 0.77 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.10 6.78 -51.93 -0.35 0.74 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.83 7.78 -51.93 -0.40 0.43 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -33.21 329.83 -8.42 -41.63 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.46 Total: 6.80 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.98 Total: 5.96 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.09 Total: -46.02 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: 0.16 Total: -27.82 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.21 -8.42 -41.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336609341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.742 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds