Wall clock time and date at job start Tue Mar 31 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86807 * 119.99814 * 2 1 4 4 H 1.48504 * 109.46933 * 239.99703 * 3 2 1 5 5 H 1.48495 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47066 * 119.99937 * 3 2 1 7 7 C 1.40048 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.46377 * 119.99872 * 359.97438 * 7 2 1 10 10 O 1.21692 * 119.99959 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00113 * 180.02562 * 9 7 2 12 12 C 1.46497 * 119.99904 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.85756 * 34.29549 * 12 11 9 14 14 C 1.54625 * 110.97093 * 270.50438 * 12 11 9 15 15 C 1.51375 * 104.15212 * 217.06216 * 14 12 11 16 16 O 1.21277 * 124.93655 * 196.29314 * 15 14 12 17 17 N 1.34418 * 110.12313 * 16.25203 * 15 14 12 18 18 C 1.46504 * 124.35008 * 180.42453 * 17 15 14 19 19 C 1.52994 * 109.47172 * 59.97888 * 18 17 15 20 20 C 1.53001 * 109.47411 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.46778 * 60.00114 * 20 19 18 22 22 C 1.52994 * 109.47057 * 300.00104 * 21 20 19 23 23 C 1.53001 * 109.47411 * 60.00284 * 22 21 20 24 24 C 1.46762 * 111.30167 * 0.40735 * 17 15 14 25 25 H 0.96998 * 120.00343 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99913 * 359.97438 * 11 9 7 27 27 H 1.09004 * 110.48744 * 335.72997 * 14 12 11 28 28 H 1.09001 * 110.48768 * 98.36309 * 14 12 11 29 29 H 1.09001 * 109.47044 * 179.97438 * 18 17 15 30 30 H 1.09001 * 109.47515 * 300.00176 * 19 18 17 31 31 H 1.09007 * 109.47195 * 59.99855 * 19 18 17 32 32 H 1.09001 * 109.47012 * 300.00591 * 20 19 18 33 33 H 1.08997 * 109.46983 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.47013 * 180.02562 * 21 20 19 35 35 H 1.09001 * 109.46959 * 60.00445 * 21 20 19 36 36 H 1.09001 * 109.47515 * 300.00001 * 22 21 20 37 37 H 1.09007 * 109.47195 * 180.02562 * 22 21 20 38 38 H 1.09003 * 109.47309 * 179.97438 * 23 22 21 39 39 H 1.09001 * 109.46947 * 59.99961 * 23 22 21 40 40 H 1.08999 * 110.24895 * 223.97813 * 24 17 15 41 41 H 1.09000 * 110.24643 * 101.98010 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0943 1.6965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0026 11 7 1.9491 -3.6477 0.0027 12 6 1.2166 -4.9164 0.0033 13 1 0.2940 -4.8321 -0.5711 14 6 0.9283 -5.3883 1.4473 15 6 1.0819 -6.8929 1.3825 16 8 0.6737 -7.6693 2.2200 17 7 1.7357 -7.2432 0.2615 18 6 2.0451 -8.6240 -0.1178 19 6 0.7447 -9.4178 -0.2587 20 6 1.0678 -10.8597 -0.6554 21 6 1.9427 -11.5015 0.4233 22 6 3.2430 -10.7078 0.5642 23 6 2.9200 -9.2659 0.9609 24 6 2.0993 -6.0647 -0.5340 25 1 -0.4850 0.8400 -0.0004 26 1 2.9190 -3.6476 0.0023 27 1 1.6526 -4.9602 2.1403 28 1 -0.0865 -5.1201 1.7409 29 1 2.5785 -8.6289 -1.0683 30 1 0.2112 -9.4129 0.6918 31 1 0.1215 -8.9607 -1.0274 32 1 1.6011 -10.8642 -1.6060 33 1 0.1413 -11.4250 -0.7562 34 1 2.1732 -12.5287 0.1405 35 1 1.4094 -11.4971 1.3739 36 1 3.7764 -10.7123 -0.3864 37 1 3.8666 -11.1653 1.3323 38 1 3.8465 -8.7005 1.0617 39 1 2.3868 -9.2614 1.9116 40 1 1.8878 -6.2414 -1.5885 41 1 3.1539 -5.8265 -0.3949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336609341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:05 Heat of formation + Delta-G solvation = -115.201530 kcal Electronic energy + Delta-G solvation = -22227.901309 eV Core-core repulsion = 18912.550065 eV Total energy + Delta-G solvation = -3315.351244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82248 -39.50065 -38.75013 -37.38268 -34.98923 -34.37546 -32.36810 -31.70118 -29.57892 -28.80281 -27.60957 -23.86141 -23.54026 -23.19525 -21.53608 -21.08565 -19.96736 -19.24026 -17.85834 -17.67776 -17.14042 -16.54067 -16.03435 -15.75032 -15.48878 -15.22320 -15.14322 -14.84166 -14.69266 -14.32228 -14.27684 -14.03224 -13.56437 -13.29707 -13.11895 -13.05986 -12.81460 -12.65383 -12.56379 -12.37091 -12.23916 -12.04469 -11.99221 -11.58163 -11.26560 -11.19769 -10.90920 -10.76425 -9.86320 -9.69226 -9.51766 -8.27105 -6.83189 1.43464 1.45897 1.48335 1.57768 1.90328 2.26592 2.48834 2.92085 3.43115 3.48686 3.67582 3.80169 3.86089 3.94441 4.03566 4.11832 4.25222 4.28834 4.37234 4.50603 4.55979 4.58074 4.62386 4.63698 4.86201 4.92341 4.97702 5.02456 5.10187 5.20104 5.26084 5.29143 5.35116 5.38110 5.48973 5.68669 5.89685 6.04507 6.20822 6.27710 6.89794 7.10341 7.55365 8.51068 8.69245 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044784 B = 0.003309 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.070791 B = 8460.935703 C = 8596.507104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.542 3.458 10 O -0.629 6.629 11 N -0.738 5.738 12 C 0.150 3.850 13 H 0.070 0.930 14 C -0.166 4.166 15 C 0.524 3.476 16 O -0.567 6.567 17 N -0.606 5.606 18 C 0.156 3.844 19 C -0.135 4.135 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.131 4.131 24 C 0.111 3.889 25 H 0.274 0.726 26 H 0.401 0.599 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.307 -18.133 -3.915 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.607 4.607 8 H 0.110 0.890 9 C 0.346 3.654 10 O -0.515 6.515 11 N -0.393 5.393 12 C 0.042 3.958 13 H 0.089 0.911 14 C -0.208 4.208 15 C 0.312 3.688 16 O -0.447 6.447 17 N -0.339 5.339 18 C 0.055 3.945 19 C -0.173 4.173 20 C -0.146 4.146 21 C -0.160 4.160 22 C -0.146 4.146 23 C -0.170 4.170 24 C -0.012 4.012 25 H 0.083 0.917 26 H 0.236 0.764 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.085 -18.525 -3.535 20.933 hybrid contribution 0.012 1.031 0.462 1.130 sum 9.097 -17.494 -3.073 19.955 Atomic orbital electron populations 1.70174 1.09518 1.28962 1.36477 1.26943 0.95455 1.04941 0.91284 0.85098 0.78177 0.74909 0.80295 1.17613 1.20382 1.18003 1.21409 0.94907 0.89878 1.54515 0.89029 1.18563 0.86803 0.84168 0.75840 1.90582 1.16271 1.87755 1.56916 1.45687 1.09242 1.03501 1.80888 1.21270 0.96182 0.84815 0.93520 0.91149 1.22822 1.04093 0.92943 1.00978 1.20843 0.76388 0.90424 0.81113 1.90629 1.52192 1.58463 1.43438 1.48488 1.56163 1.07441 1.21814 1.21257 0.96027 0.77785 0.99425 1.21918 0.97088 0.97025 1.01270 1.21467 1.00379 0.93355 0.99416 1.21578 0.96040 0.99796 0.98566 1.21469 0.97501 0.92966 1.02676 1.21894 0.99129 0.97518 0.98420 1.22392 0.99830 0.82354 0.96642 0.91657 0.76392 0.87810 0.90677 0.86363 0.93720 0.92013 0.89833 0.91447 0.90051 0.93776 0.89820 0.91195 0.91408 0.93663 0.87527 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.27 11.83 21.83 0.26 -49.01 16 2 C 0.03 1.57 5.50 85.31 0.47 2.04 16 3 Si 1.00 39.57 29.56 68.60 2.03 41.60 16 4 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 7 C -0.57 -30.62 9.54 24.83 0.24 -30.38 16 8 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 9 C 0.54 29.48 7.75 86.36 0.67 30.15 16 10 O -0.63 -40.40 14.71 -4.32 -0.06 -40.46 16 11 N -0.74 -29.48 5.16 -441.81 -2.28 -31.76 16 12 C 0.15 5.22 3.47 46.05 0.16 5.38 16 13 H 0.07 2.88 7.63 -2.39 -0.02 2.86 16 14 C -0.17 -6.02 6.60 30.62 0.20 -5.82 16 15 C 0.52 17.73 7.42 87.93 0.65 18.38 16 16 O -0.57 -22.56 15.12 -3.02 -0.05 -22.61 16 17 N -0.61 -15.61 2.83 -793.91 -2.25 -17.86 16 18 C 0.16 3.20 2.74 44.99 0.12 3.32 16 19 C -0.13 -2.93 5.21 30.59 0.16 -2.78 16 20 C -0.11 -1.67 5.92 30.60 0.18 -1.49 16 21 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 22 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 23 C -0.13 -2.68 5.21 30.60 0.16 -2.52 16 24 C 0.11 2.58 7.03 86.83 0.61 3.19 16 25 H 0.27 14.97 8.29 -92.71 -0.77 14.21 16 26 H 0.40 13.09 8.37 -92.71 -0.78 12.32 16 27 H 0.10 3.70 8.08 -2.38 -0.02 3.68 16 28 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.12 1.72 8.07 -2.39 -0.02 1.70 16 30 H 0.04 1.30 6.80 -2.39 -0.02 1.28 16 31 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.25 6.78 -2.39 -0.02 1.23 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.10 1.89 7.78 -2.39 -0.02 1.88 16 Total: -1.00 -76.66 329.83 1.88 -74.77 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.25 Total: 28.91 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 3.98 Total: 16.42 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -4.27 Total: -98.63 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -0.11 Total: -63.07 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -76.66 1.88 -74.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336609341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.429 kcal (2) G-P(sol) polarization free energy of solvation -76.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds