Wall clock time and date at job start Tue Mar 31 2020 02:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46784 * 266.87789 * 3 2 1 5 5 N 1.46505 * 109.46643 * 180.02562 * 4 3 2 6 6 C 1.46492 * 120.00239 * 269.99949 * 5 4 3 7 7 C 1.50704 * 109.47223 * 270.00387 * 6 5 4 8 8 H 1.07995 * 120.00192 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99677 * 179.97438 * 7 6 5 10 10 N 1.31505 * 120.00452 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99483 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47372 * 90.00366 * 11 9 7 13 13 H 1.48507 * 109.47148 * 210.00161 * 11 9 7 14 14 H 1.48506 * 109.47431 * 329.99936 * 11 9 7 15 15 C 1.34780 * 119.99876 * 90.00601 * 5 4 3 16 16 O 1.21274 * 120.00170 * 179.97438 * 15 5 4 17 17 C 1.50706 * 119.99931 * 359.97438 * 15 5 4 18 18 O 1.42897 * 109.47084 * 180.02562 * 17 15 5 19 19 C 1.42898 * 114.00017 * 179.97438 * 18 17 15 20 20 C 1.54894 * 110.48190 * 93.24436 * 19 18 17 21 21 C 1.55238 * 102.58338 * 156.67678 * 20 19 18 22 22 C 1.54266 * 104.23333 * 322.08174 * 21 20 19 23 23 C 1.53869 * 106.59800 * 23.61579 * 22 21 20 24 24 H 1.09001 * 109.46792 * 146.88618 * 3 2 1 25 25 H 1.09001 * 109.47666 * 26.87895 * 3 2 1 26 26 H 1.08994 * 109.46974 * 60.00470 * 4 3 2 27 27 H 1.09001 * 109.47521 * 300.00110 * 4 3 2 28 28 H 1.09004 * 109.47283 * 30.00132 * 6 5 4 29 29 H 1.09000 * 109.47431 * 150.00749 * 6 5 4 30 30 H 0.97000 * 119.99926 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47134 * 60.00350 * 17 15 5 32 32 H 1.08999 * 109.46878 * 300.00538 * 17 15 5 33 33 H 1.09002 * 110.43427 * 330.70321 * 19 18 17 34 34 H 1.08996 * 110.75388 * 275.06031 * 20 19 18 35 35 H 1.08993 * 110.76071 * 38.44257 * 20 19 18 36 36 H 1.09005 * 110.46917 * 203.39204 * 21 20 19 37 37 H 1.09007 * 110.58541 * 80.83124 * 21 20 19 38 38 H 1.08999 * 110.03060 * 264.32313 * 22 21 20 39 39 H 1.09006 * 110.06829 * 142.91691 * 22 21 20 40 40 H 1.09001 * 110.02983 * 240.71432 * 23 22 21 41 41 H 1.08996 * 110.07773 * 119.30576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1178 0.0795 1.4404 5 7 4.5829 0.0807 1.4404 6 6 5.3165 -1.1854 1.5092 7 6 5.5680 -1.5425 2.9516 8 1 5.2169 -0.8912 3.7383 9 6 6.2464 -2.7007 3.2669 10 7 6.6744 -3.4935 2.3090 11 14 6.5575 -3.1436 5.0548 12 1 5.4279 -3.9607 5.5661 13 1 7.8183 -3.9212 5.1600 14 1 6.6737 -1.9010 5.8596 15 6 5.2557 1.2468 1.3771 16 8 6.4685 1.2480 1.3775 17 6 4.5010 2.5494 1.3058 18 8 5.4287 3.6347 1.2463 19 6 4.8130 4.9223 1.1753 20 6 4.6531 5.5256 2.5929 21 6 4.5723 7.0489 2.3051 22 6 5.5773 7.2715 1.1560 23 6 5.7302 5.9195 0.4377 24 1 2.9708 0.8616 -0.5614 25 1 2.9718 -0.9158 -0.4646 26 1 2.7549 -0.7814 2.0019 27 1 2.7541 0.9959 1.9051 28 1 4.7281 -1.9724 1.0374 29 1 6.2689 -1.0823 0.9892 30 1 7.1520 -4.3082 2.5308 31 1 3.8740 2.6549 2.1911 32 1 3.8746 2.5579 0.4138 33 1 3.8453 4.8545 0.6781 34 1 3.7363 5.1697 3.0630 35 1 5.5204 5.2946 3.2112 36 1 4.8674 7.6194 3.1858 37 1 3.5661 7.3268 1.9911 38 1 6.5386 7.5920 1.5576 39 1 5.1937 8.0209 0.4636 40 1 6.7659 5.5836 0.4907 41 1 5.4207 6.0117 -0.6033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343873683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:27 Heat of formation + Delta-G solvation = -66.785624 kcal Electronic energy + Delta-G solvation = -21775.764816 eV Core-core repulsion = 18462.513043 eV Total energy + Delta-G solvation = -3313.251773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.55952 -38.56275 -36.89022 -35.87111 -35.15538 -32.89837 -30.86816 -29.24306 -28.80836 -27.56763 -26.09598 -24.03968 -22.63904 -20.86620 -20.45669 -18.71093 -17.66517 -17.22037 -16.52145 -16.41742 -15.63737 -15.57908 -15.42344 -14.71420 -14.59744 -14.03020 -13.96365 -13.60877 -13.39250 -12.94241 -12.68281 -12.46527 -12.41319 -12.13824 -11.95677 -11.81668 -11.49114 -11.36074 -11.28448 -11.23426 -11.00403 -10.88553 -10.73955 -10.62953 -10.57016 -10.18835 -9.71439 -9.49057 -8.95316 -8.47206 -7.86952 -6.08721 -4.13304 2.69212 2.77874 3.20134 3.28930 3.30366 3.36466 3.41574 3.87348 4.29279 4.41705 4.45129 4.47532 4.76863 4.91869 4.97811 5.07504 5.12584 5.22208 5.25930 5.27519 5.32421 5.35289 5.44509 5.50504 5.52413 5.70630 5.75438 5.79291 5.86434 6.02126 6.04484 6.07292 6.15996 6.86649 7.23924 7.34771 7.43818 7.54077 7.87567 8.16688 8.22528 8.83883 8.98107 9.52275 10.99467 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.004623 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.945985 B = 6054.642283 C = 7521.388752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.052 4.052 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.246 3.754 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.508 3.492 16 O -0.511 6.511 17 C 0.041 3.959 18 O -0.351 6.351 19 C 0.080 3.920 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.123 4.123 24 H 0.106 0.894 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.264 0.736 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 16.643 -3.885 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.010 4.010 5 N -0.331 5.331 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.293 3.707 16 O -0.385 6.385 17 C -0.039 4.039 18 O -0.269 6.269 19 C 0.022 3.978 20 C -0.187 4.187 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.160 4.160 24 H 0.124 0.876 25 H 0.137 0.863 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.587 16.435 -3.921 18.522 hybrid contribution 0.220 -0.373 0.995 1.085 sum -7.368 16.062 -2.925 17.912 Atomic orbital electron populations 1.81210 1.13039 1.09359 1.08641 1.29101 0.95092 0.92811 0.93102 1.19925 0.81343 1.06538 1.01519 1.21329 0.82259 1.04216 0.93222 1.48175 1.04781 1.08046 1.72064 1.19367 0.92642 0.77586 0.97659 1.21423 1.36785 1.06453 0.92184 0.92341 1.24910 0.95246 0.96172 0.97609 1.69913 1.38208 1.13209 1.31899 0.86514 0.77704 0.78460 0.84859 1.20654 1.21084 1.19864 1.19972 0.88245 0.84388 0.78081 1.90717 1.13589 1.86521 1.47638 1.22449 0.92392 0.87536 1.01491 1.88087 1.31537 1.12690 1.94581 1.23063 0.95927 0.83431 0.95394 1.23081 1.02641 0.95246 0.97722 1.22326 0.99319 0.95968 0.98477 1.22079 0.99745 0.96796 0.97349 1.22169 1.01473 0.93614 0.98792 0.87619 0.86306 0.88510 0.90820 0.94548 0.93473 0.92651 0.90893 0.91082 0.91643 0.91461 0.90119 0.91466 0.91645 0.91511 0.91756 0.90119 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.38 18.54 42.15 0.78 -5.60 16 2 C 0.22 2.54 15.43 -20.76 -0.32 2.21 16 3 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 4 C 0.12 1.51 5.17 -4.04 -0.02 1.49 16 5 N -0.60 -10.96 2.46 -175.06 -0.43 -11.39 16 6 C 0.25 5.83 5.16 -5.20 -0.03 5.81 16 7 C -0.53 -14.19 9.39 -34.44 -0.32 -14.52 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 11 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.51 9.76 7.75 -10.98 -0.09 9.68 16 16 O -0.51 -12.63 16.08 -14.35 -0.23 -12.86 16 17 C 0.04 0.58 4.82 36.01 0.17 0.75 16 18 O -0.35 -5.43 9.59 -55.14 -0.53 -5.96 16 19 C 0.08 0.90 3.33 -25.07 -0.08 0.82 16 20 C -0.15 -1.53 6.65 -24.55 -0.16 -1.69 16 21 C -0.12 -1.01 6.84 -24.88 -0.17 -1.18 16 22 C -0.12 -1.01 6.80 -25.62 -0.17 -1.18 16 23 C -0.12 -1.24 6.56 -25.62 -0.17 -1.41 16 24 H 0.11 0.86 7.22 -51.93 -0.37 0.48 16 25 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 27 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 28 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.07 0.87 7.40 -51.93 -0.38 0.49 16 32 H 0.07 0.74 7.15 -51.93 -0.37 0.37 16 33 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -33.68 349.11 -7.51 -41.19 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -6.44 Total: -3.84 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.64 Total: 1.72 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 1.09 Total: -41.79 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.76 Total: -18.81 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.68 -7.51 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343873683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.593 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds