Wall clock time and date at job start Tue Mar 31 2020 02:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46784 * 266.87789 * 3 2 1 5 5 N 1.46505 * 109.46643 * 180.02562 * 4 3 2 6 6 C 1.46492 * 120.00239 * 269.99949 * 5 4 3 7 7 C 1.50704 * 109.47223 * 270.00387 * 6 5 4 8 8 H 1.07995 * 120.00192 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99677 * 179.97438 * 7 6 5 10 10 N 1.31505 * 120.00452 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99483 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47372 * 90.00366 * 11 9 7 13 13 H 1.48507 * 109.47148 * 210.00161 * 11 9 7 14 14 H 1.48506 * 109.47431 * 329.99936 * 11 9 7 15 15 C 1.34780 * 119.99876 * 90.00601 * 5 4 3 16 16 O 1.21274 * 120.00170 * 179.97438 * 15 5 4 17 17 C 1.50706 * 119.99931 * 359.97438 * 15 5 4 18 18 O 1.42897 * 109.47084 * 180.02562 * 17 15 5 19 19 C 1.42898 * 114.00017 * 179.97438 * 18 17 15 20 20 C 1.54894 * 110.48190 * 93.24436 * 19 18 17 21 21 C 1.55238 * 102.58338 * 156.67678 * 20 19 18 22 22 C 1.54266 * 104.23333 * 322.08174 * 21 20 19 23 23 C 1.53869 * 106.59800 * 23.61579 * 22 21 20 24 24 H 1.09001 * 109.46792 * 146.88618 * 3 2 1 25 25 H 1.09001 * 109.47666 * 26.87895 * 3 2 1 26 26 H 1.08994 * 109.46974 * 60.00470 * 4 3 2 27 27 H 1.09001 * 109.47521 * 300.00110 * 4 3 2 28 28 H 1.09004 * 109.47283 * 30.00132 * 6 5 4 29 29 H 1.09000 * 109.47431 * 150.00749 * 6 5 4 30 30 H 0.97000 * 119.99926 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47134 * 60.00350 * 17 15 5 32 32 H 1.08999 * 109.46878 * 300.00538 * 17 15 5 33 33 H 1.09002 * 110.43427 * 330.70321 * 19 18 17 34 34 H 1.08996 * 110.75388 * 275.06031 * 20 19 18 35 35 H 1.08993 * 110.76071 * 38.44257 * 20 19 18 36 36 H 1.09005 * 110.46917 * 203.39204 * 21 20 19 37 37 H 1.09007 * 110.58541 * 80.83124 * 21 20 19 38 38 H 1.08999 * 110.03060 * 264.32313 * 22 21 20 39 39 H 1.09006 * 110.06829 * 142.91691 * 22 21 20 40 40 H 1.09001 * 110.02983 * 240.71432 * 23 22 21 41 41 H 1.08996 * 110.07773 * 119.30576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1178 0.0795 1.4404 5 7 4.5829 0.0807 1.4404 6 6 5.3165 -1.1854 1.5092 7 6 5.5680 -1.5425 2.9516 8 1 5.2169 -0.8912 3.7383 9 6 6.2464 -2.7007 3.2669 10 7 6.6744 -3.4935 2.3090 11 14 6.5575 -3.1436 5.0548 12 1 5.4279 -3.9607 5.5661 13 1 7.8183 -3.9212 5.1600 14 1 6.6737 -1.9010 5.8596 15 6 5.2557 1.2468 1.3771 16 8 6.4685 1.2480 1.3775 17 6 4.5010 2.5494 1.3058 18 8 5.4287 3.6347 1.2463 19 6 4.8130 4.9223 1.1753 20 6 4.6531 5.5256 2.5929 21 6 4.5723 7.0489 2.3051 22 6 5.5773 7.2715 1.1560 23 6 5.7302 5.9195 0.4377 24 1 2.9708 0.8616 -0.5614 25 1 2.9718 -0.9158 -0.4646 26 1 2.7549 -0.7814 2.0019 27 1 2.7541 0.9959 1.9051 28 1 4.7281 -1.9724 1.0374 29 1 6.2689 -1.0823 0.9892 30 1 7.1520 -4.3082 2.5308 31 1 3.8740 2.6549 2.1911 32 1 3.8746 2.5579 0.4138 33 1 3.8453 4.8545 0.6781 34 1 3.7363 5.1697 3.0630 35 1 5.5204 5.2946 3.2112 36 1 4.8674 7.6194 3.1858 37 1 3.5661 7.3268 1.9911 38 1 6.5386 7.5920 1.5576 39 1 5.1937 8.0209 0.4636 40 1 6.7659 5.5836 0.4907 41 1 5.4207 6.0117 -0.6033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343873683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:26 Heat of formation + Delta-G solvation = -87.162993 kcal Electronic energy + Delta-G solvation = -21776.648445 eV Core-core repulsion = 18462.513043 eV Total energy + Delta-G solvation = -3314.135402 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89555 -39.56781 -37.98709 -36.88780 -36.52724 -34.85791 -32.17524 -30.52091 -29.57818 -28.78960 -27.43926 -25.31725 -24.37307 -21.63353 -21.19690 -20.12133 -18.83178 -18.35940 -18.26184 -17.66374 -17.00095 -16.69495 -16.41671 -16.15547 -15.70591 -15.29348 -15.10285 -14.77168 -14.34818 -14.24982 -14.04820 -13.67433 -13.54406 -13.34533 -13.19531 -13.03702 -12.92135 -12.70961 -12.51748 -12.38420 -12.17624 -12.04537 -11.93843 -11.84634 -11.67599 -11.48992 -11.28043 -10.58004 -10.53460 -10.41700 -9.50230 -8.17864 -6.30042 1.39723 1.42577 1.51701 1.66949 1.82639 1.85428 2.06626 2.42698 2.87661 3.13739 3.25153 3.67789 3.75106 3.80751 4.00589 4.08986 4.11306 4.25147 4.31183 4.37915 4.56339 4.60206 4.63190 4.71313 4.82378 4.84494 4.98972 5.05816 5.08709 5.10950 5.23611 5.23974 5.32644 5.34059 5.50059 5.60247 5.86557 6.13006 6.30594 6.61589 6.74037 6.80466 7.34219 7.50570 8.89033 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.004623 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.945985 B = 6054.642283 C = 7521.388752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.247 3.753 3 C -0.039 4.039 4 C 0.111 3.889 5 N -0.595 5.595 6 C 0.260 3.740 7 C -0.542 4.542 8 H 0.053 0.947 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.958 3.042 12 H -0.265 1.265 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.499 3.501 16 O -0.581 6.581 17 C 0.051 3.949 18 O -0.390 6.390 19 C 0.073 3.927 20 C -0.152 4.152 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.126 4.126 24 H 0.137 0.863 25 H 0.121 0.879 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.040 0.960 29 H 0.002 0.998 30 H 0.266 0.734 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 18.316 -3.727 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.014 4.014 5 N -0.327 5.327 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.784 3.216 12 H -0.190 1.190 13 H -0.210 1.210 14 H -0.200 1.200 15 C 0.287 3.713 16 O -0.460 6.460 17 C -0.028 4.028 18 O -0.309 6.309 19 C 0.016 3.984 20 C -0.190 4.190 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.164 4.164 24 H 0.155 0.845 25 H 0.139 0.861 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.878 18.123 -3.764 20.981 hybrid contribution 0.933 -0.874 0.924 1.578 sum -8.944 17.249 -2.840 19.637 Atomic orbital electron populations 1.81259 1.14373 1.11018 1.09985 1.29096 0.94865 0.91345 0.91753 1.19843 0.80156 1.08202 0.99804 1.21594 0.78673 1.05699 0.95415 1.48036 1.06927 1.06294 1.71423 1.18831 0.91519 0.80192 0.95588 1.21763 1.36525 1.06293 0.93514 0.92851 1.25722 0.95150 0.96324 1.01572 1.70018 1.39038 1.13684 1.33794 0.85556 0.77927 0.78087 0.80079 1.19005 1.21007 1.20034 1.21034 0.87806 0.86171 0.76250 1.90682 1.16844 1.87632 1.50815 1.22457 0.91472 0.84134 1.04717 1.88063 1.33440 1.14390 1.94968 1.23367 0.97079 0.81698 0.96290 1.23090 1.02034 0.96902 0.96979 1.22328 1.00243 0.94346 0.98601 1.22087 0.99850 0.96122 0.97686 1.22224 0.99822 0.94406 0.99935 0.84500 0.86088 0.89425 0.87391 0.94246 0.97993 0.92543 0.88269 0.86593 0.88794 0.90279 0.92717 0.90972 0.89804 0.92007 0.89827 0.92830 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.91 18.54 20.00 0.37 -12.54 16 2 C 0.25 5.03 15.43 89.44 1.38 6.41 16 3 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 4 C 0.11 2.58 5.17 86.38 0.45 3.03 16 5 N -0.59 -21.47 2.46 -826.14 -2.03 -23.50 16 6 C 0.26 12.65 5.16 85.64 0.44 13.09 16 7 C -0.54 -29.58 9.39 25.60 0.24 -29.34 16 8 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 9 C 0.01 0.64 5.46 84.66 0.46 1.10 16 10 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 11 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 C 0.50 19.02 7.75 87.66 0.68 19.70 16 16 O -0.58 -29.90 16.08 16.03 0.26 -29.64 16 17 C 0.05 1.29 4.82 71.24 0.34 1.63 16 18 O -0.39 -11.59 9.59 -129.94 -1.25 -12.84 16 19 C 0.07 1.46 3.33 31.67 0.11 1.57 16 20 C -0.15 -2.82 6.65 32.01 0.21 -2.60 16 21 C -0.12 -1.60 6.84 31.79 0.22 -1.38 16 22 C -0.12 -1.72 6.80 31.32 0.21 -1.51 16 23 C -0.13 -2.37 6.56 31.32 0.21 -2.17 16 24 H 0.14 1.57 7.22 -2.39 -0.02 1.55 16 25 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.09 2.26 8.07 -2.39 -0.02 2.24 16 27 H 0.11 1.82 6.44 -2.39 -0.02 1.81 16 28 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 29 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 30 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.10 1.97 7.40 -2.39 -0.02 1.96 16 32 H 0.12 1.84 7.15 -2.39 -0.02 1.83 16 33 H 0.09 1.34 7.84 -2.39 -0.02 1.32 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.05 1.28 8.07 -2.39 -0.02 1.26 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -77.77 349.11 5.80 -71.97 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.01 Total: 5.23 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.12 Total: 9.04 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -1.37 Total: -89.75 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.99 Total: -42.48 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -77.77 5.80 -71.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343873683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.191 kcal (2) G-P(sol) polarization free energy of solvation -77.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds