Wall clock time and date at job start Tue Mar 31 2020 02:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86806 * 119.99875 * 2 1 4 4 H 1.48496 * 109.47094 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46952 * 299.99988 * 3 2 1 6 6 H 1.48499 * 109.47132 * 59.99362 * 3 2 1 7 7 C 1.38946 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99937 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00430 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99555 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00221 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46963 * 179.97438 * 12 10 9 14 14 C 1.34776 * 119.99922 * 180.02562 * 13 12 10 15 15 O 1.21281 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00098 * 180.02562 * 14 13 12 17 17 H 1.09002 * 115.56239 * 34.29340 * 16 14 13 18 18 C 1.53036 * 117.50144 * 248.58484 * 16 14 13 19 19 C 1.52808 * 117.50405 * 179.97438 * 16 14 13 20 20 C 1.53152 * 117.75023 * 215.11384 * 19 16 14 21 21 C 1.53187 * 108.88025 * 199.62271 * 20 19 16 22 22 C 1.52937 * 109.45203 * 303.43153 * 21 20 19 23 23 C 1.52945 * 109.82101 * 62.98692 * 22 21 20 24 24 C 1.53156 * 117.74956 * 359.84883 * 19 16 14 25 25 H 0.97006 * 119.99965 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99650 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46857 * 59.99634 * 12 10 9 28 28 H 1.09000 * 109.47017 * 299.99788 * 12 10 9 29 29 H 0.96996 * 120.00547 * 0.02562 * 13 12 10 30 30 H 1.09000 * 117.50130 * 145.04569 * 18 16 14 31 31 H 1.08998 * 117.52901 * 359.97438 * 18 16 14 32 32 H 1.09001 * 109.56778 * 319.43886 * 20 19 16 33 33 H 1.08994 * 109.57297 * 79.80369 * 20 19 16 34 34 H 1.09003 * 109.46842 * 183.43929 * 21 20 19 35 35 H 1.08999 * 109.47246 * 63.43161 * 21 20 19 36 36 H 1.08999 * 109.41686 * 302.87680 * 22 21 20 37 37 H 1.09002 * 109.41225 * 183.08930 * 22 21 20 38 38 H 1.09005 * 109.47751 * 177.01920 * 23 22 21 39 39 H 1.09003 * 109.48141 * 57.00249 * 23 22 21 40 40 H 1.08997 * 109.56699 * 280.19110 * 24 19 16 41 41 H 1.09002 * 109.56390 * 40.42784 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7466 -7.2471 0.0027 15 8 0.5543 -7.4687 0.0019 16 6 2.7259 -8.3925 0.0038 17 1 3.6486 -8.2219 0.5585 18 6 2.8094 -9.2521 -1.2596 19 6 2.1543 -9.8096 0.0044 20 6 2.9155 -10.8852 0.7850 21 6 2.4876 -12.2646 0.2741 22 6 0.9706 -12.4078 0.4044 23 6 0.2740 -11.3719 -0.4793 24 6 0.6306 -9.9640 0.0074 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6175 -4.9212 -0.8880 28 1 0.6169 -4.9201 0.8920 29 1 3.1495 -5.7992 0.0030 30 1 3.7870 -9.6471 -1.5359 31 1 2.1559 -8.9897 -2.0915 32 1 3.9873 -10.7563 0.6339 33 1 2.6818 -10.8004 1.8462 34 1 2.9778 -13.0388 0.8645 35 1 2.7741 -12.3694 -0.7723 36 1 0.6798 -12.2520 1.4433 37 1 0.6731 -13.4090 0.0923 38 1 -0.8054 -11.5133 -0.4233 39 1 0.6034 -11.4940 -1.5112 40 1 0.2511 -9.8204 1.0191 41 1 0.1873 -9.2226 -0.6574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344118078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:45 Heat of formation + Delta-G solvation = -72.457890 kcal Electronic energy + Delta-G solvation = -21520.149317 eV Core-core repulsion = 18206.651576 eV Total energy + Delta-G solvation = -3313.497741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44817 -38.71244 -37.79058 -34.84719 -34.43029 -33.66627 -31.39261 -30.95049 -28.44749 -27.25278 -24.85044 -23.34527 -22.85563 -21.53820 -19.95595 -19.50966 -18.73814 -18.06453 -17.08493 -15.93161 -15.60687 -15.21679 -15.06155 -14.75182 -14.59124 -14.25205 -13.95098 -13.77942 -13.49289 -13.38610 -12.93524 -12.61827 -12.23310 -12.06746 -11.95360 -11.92659 -11.64648 -11.29313 -11.15806 -11.12857 -10.90677 -10.41826 -10.36636 -10.32625 -9.97230 -9.78357 -9.65888 -9.21915 -8.76800 -8.64295 -8.11310 -6.52657 -3.94673 2.66412 3.09440 3.21152 3.26293 3.33537 3.71848 3.77990 4.10419 4.50376 4.54384 4.67490 4.78182 4.87364 4.94390 4.97765 5.15743 5.17479 5.22344 5.26123 5.42736 5.52109 5.60127 5.68783 5.72523 5.84536 5.88050 5.91291 5.95310 5.96137 6.05326 6.06468 6.06876 6.21650 6.38079 6.53324 6.78280 7.45162 7.84611 7.91290 8.43334 8.50442 9.03627 9.38206 9.86057 10.64331 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.052556 B = 0.002774 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.638883 B =10090.698579 C =10441.286304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.704 5.704 14 C 0.541 3.459 15 O -0.544 6.544 16 C -0.185 4.185 17 H 0.122 0.878 18 C -0.145 4.145 19 C -0.084 4.084 20 C -0.084 4.084 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.084 4.084 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.411 0.589 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.396 -21.027 -0.303 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.357 5.357 14 C 0.327 3.673 15 O -0.423 6.423 16 C -0.206 4.206 17 H 0.140 0.860 18 C -0.183 4.183 19 C -0.084 4.084 20 C -0.121 4.121 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.121 4.121 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.249 0.751 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.211 -20.961 -0.300 21.080 hybrid contribution 0.319 1.156 0.067 1.202 sum 2.530 -19.805 -0.233 19.967 Atomic orbital electron populations 1.69625 1.06022 1.28432 1.49424 1.25332 0.95672 0.99955 0.96806 0.85756 0.79682 0.80802 0.77841 1.19126 1.20594 1.20599 1.19780 0.93486 0.81991 1.48123 0.87630 1.41809 1.09487 1.04499 1.62646 1.19759 0.88299 0.85016 0.85552 1.90498 1.13727 1.86838 1.57325 1.20946 0.91919 0.85826 1.03166 1.45698 1.11589 1.04539 1.73843 1.19609 0.88678 0.83062 0.75946 1.90624 1.16700 1.84263 1.50743 1.22300 1.01377 0.91531 1.05384 0.86031 1.23073 1.02650 1.01355 0.91200 1.21526 0.96367 0.91241 0.99287 1.21193 0.98515 0.93153 0.99250 1.21488 0.96095 0.96269 1.01309 1.21515 0.95243 0.98689 1.00317 1.21606 0.99673 0.95185 0.99264 1.21413 0.91260 0.96359 1.03060 0.91629 0.77040 0.89913 0.89876 0.75125 0.88036 0.88288 0.91768 0.91348 0.92143 0.91921 0.92121 0.92495 0.92184 0.92274 0.91734 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 13.05 55.50 0.72 -23.22 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 8 H 0.11 3.00 7.16 -52.48 -0.38 2.63 16 9 N -0.55 -13.68 5.29 -10.96 -0.06 -13.74 16 10 C 0.43 9.86 7.85 -10.99 -0.09 9.77 16 11 O -0.60 -15.36 15.24 5.54 0.08 -15.27 16 12 C 0.11 2.02 6.15 -5.19 -0.03 1.99 16 13 N -0.70 -11.79 5.53 -61.47 -0.34 -12.13 16 14 C 0.54 8.45 7.59 -10.99 -0.08 8.37 16 15 O -0.54 -9.71 13.08 5.56 0.07 -9.64 16 16 C -0.18 -2.22 5.92 -91.85 -0.54 -2.77 16 17 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 18 C -0.15 -1.50 9.64 -26.77 -0.26 -1.76 16 19 C -0.08 -0.90 1.97 -154.50 -0.31 -1.21 16 20 C -0.08 -0.73 5.67 -26.56 -0.15 -0.88 16 21 C -0.11 -0.89 5.93 -26.67 -0.16 -1.05 16 22 C -0.12 -0.99 5.82 -26.79 -0.16 -1.15 16 23 C -0.12 -1.15 5.93 -26.67 -0.16 -1.31 16 24 C -0.08 -1.00 4.24 -26.56 -0.11 -1.12 16 25 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.41 6.82 7.44 -40.82 -0.30 6.51 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 1.37 5.79 -51.93 -0.30 1.07 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -30.05 335.49 -8.12 -38.17 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -6.35 Total: 14.23 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -2.28 Total: 1.02 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.33 Total: -49.09 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.16 Total: -24.91 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.05 -8.12 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344118078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.285 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds