Wall clock time and date at job start Tue Mar 31 2020 02:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86806 * 119.99875 * 2 1 4 4 H 1.48496 * 109.47094 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46952 * 299.99988 * 3 2 1 6 6 H 1.48499 * 109.47132 * 59.99362 * 3 2 1 7 7 C 1.38946 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99937 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00430 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99555 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00221 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46963 * 179.97438 * 12 10 9 14 14 C 1.34776 * 119.99922 * 180.02562 * 13 12 10 15 15 O 1.21281 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00098 * 180.02562 * 14 13 12 17 17 H 1.09002 * 115.56239 * 34.29340 * 16 14 13 18 18 C 1.53036 * 117.50144 * 248.58484 * 16 14 13 19 19 C 1.52808 * 117.50405 * 179.97438 * 16 14 13 20 20 C 1.53152 * 117.75023 * 215.11384 * 19 16 14 21 21 C 1.53187 * 108.88025 * 199.62271 * 20 19 16 22 22 C 1.52937 * 109.45203 * 303.43153 * 21 20 19 23 23 C 1.52945 * 109.82101 * 62.98692 * 22 21 20 24 24 C 1.53156 * 117.74956 * 359.84883 * 19 16 14 25 25 H 0.97006 * 119.99965 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99650 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46857 * 59.99634 * 12 10 9 28 28 H 1.09000 * 109.47017 * 299.99788 * 12 10 9 29 29 H 0.96996 * 120.00547 * 0.02562 * 13 12 10 30 30 H 1.09000 * 117.50130 * 145.04569 * 18 16 14 31 31 H 1.08998 * 117.52901 * 359.97438 * 18 16 14 32 32 H 1.09001 * 109.56778 * 319.43886 * 20 19 16 33 33 H 1.08994 * 109.57297 * 79.80369 * 20 19 16 34 34 H 1.09003 * 109.46842 * 183.43929 * 21 20 19 35 35 H 1.08999 * 109.47246 * 63.43161 * 21 20 19 36 36 H 1.08999 * 109.41686 * 302.87680 * 22 21 20 37 37 H 1.09002 * 109.41225 * 183.08930 * 22 21 20 38 38 H 1.09005 * 109.47751 * 177.01920 * 23 22 21 39 39 H 1.09003 * 109.48141 * 57.00249 * 23 22 21 40 40 H 1.08997 * 109.56699 * 280.19110 * 24 19 16 41 41 H 1.09002 * 109.56390 * 40.42784 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7466 -7.2471 0.0027 15 8 0.5543 -7.4687 0.0019 16 6 2.7259 -8.3925 0.0038 17 1 3.6486 -8.2219 0.5585 18 6 2.8094 -9.2521 -1.2596 19 6 2.1543 -9.8096 0.0044 20 6 2.9155 -10.8852 0.7850 21 6 2.4876 -12.2646 0.2741 22 6 0.9706 -12.4078 0.4044 23 6 0.2740 -11.3719 -0.4793 24 6 0.6306 -9.9640 0.0074 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6175 -4.9212 -0.8880 28 1 0.6169 -4.9201 0.8920 29 1 3.1495 -5.7992 0.0030 30 1 3.7870 -9.6471 -1.5359 31 1 2.1559 -8.9897 -2.0915 32 1 3.9873 -10.7563 0.6339 33 1 2.6818 -10.8004 1.8462 34 1 2.9778 -13.0388 0.8645 35 1 2.7741 -12.3694 -0.7723 36 1 0.6798 -12.2520 1.4433 37 1 0.6731 -13.4090 0.0923 38 1 -0.8054 -11.5133 -0.4233 39 1 0.6034 -11.4940 -1.5112 40 1 0.2511 -9.8204 1.0191 41 1 0.1873 -9.2226 -0.6574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344118078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:44 Heat of formation + Delta-G solvation = -91.682838 kcal Electronic energy + Delta-G solvation = -21520.982974 eV Core-core repulsion = 18206.651576 eV Total energy + Delta-G solvation = -3314.331397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54952 -40.32580 -39.08557 -36.27301 -35.64274 -35.28395 -33.39758 -31.70226 -29.83954 -28.28630 -26.63952 -24.54788 -23.60448 -22.34529 -21.41503 -21.04829 -20.07850 -19.53855 -18.41869 -17.27261 -17.14478 -16.72719 -16.38409 -16.14853 -15.80836 -15.53522 -15.23411 -15.16950 -14.62403 -14.27168 -14.02901 -13.82562 -13.59958 -13.57417 -13.39708 -12.93061 -12.85023 -12.72997 -12.46742 -12.13223 -12.10252 -11.89061 -11.60407 -11.60006 -11.17305 -10.84451 -10.67844 -10.58285 -10.29954 -10.18812 -10.09268 -8.53180 -6.03611 1.33603 1.41774 1.48150 1.55989 1.88254 2.00496 2.30503 2.83129 3.10262 3.13935 3.61171 3.68876 3.83445 4.00716 4.05670 4.21371 4.24659 4.31968 4.39738 4.41516 4.46807 4.50507 4.67851 4.80431 4.86196 4.90612 5.02405 5.08492 5.17249 5.21642 5.28845 5.33717 5.35678 5.36906 5.46974 5.61210 5.68025 5.89952 6.44185 6.54936 7.01365 7.20731 7.42004 7.91799 8.64036 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.052556 B = 0.002774 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.638883 B =10090.698579 C =10441.286304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.122 3.878 13 N -0.706 5.706 14 C 0.538 3.462 15 O -0.570 6.570 16 C -0.198 4.198 17 H 0.141 0.859 18 C -0.132 4.132 19 C -0.082 4.082 20 C -0.081 4.081 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.083 4.083 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.413 0.587 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -22.277 -0.432 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.006 4.006 13 N -0.360 5.360 14 C 0.327 3.673 15 O -0.450 6.450 16 C -0.218 4.218 17 H 0.159 0.841 18 C -0.169 4.169 19 C -0.082 4.082 20 C -0.119 4.119 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.120 4.120 25 H 0.090 0.910 26 H 0.233 0.767 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.251 0.749 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.228 -22.235 -0.429 22.472 hybrid contribution -0.055 1.493 0.101 1.497 sum 3.173 -20.742 -0.328 20.986 Atomic orbital electron populations 1.69689 1.07042 1.29618 1.49338 1.26151 0.96550 1.02742 0.95746 0.84801 0.78124 0.76634 0.78354 1.19400 1.19562 1.19590 1.19775 0.92954 0.83528 1.50342 0.89587 1.41863 1.09589 1.04658 1.63419 1.20429 0.88125 0.85928 0.83545 1.90472 1.15172 1.87547 1.58016 1.20747 0.91779 0.84069 1.03981 1.45753 1.11263 1.04547 1.74406 1.20273 0.89060 0.83266 0.74739 1.90630 1.18109 1.84562 1.51721 1.22348 1.01336 0.90632 1.07522 0.84149 1.23178 1.03699 0.99790 0.90222 1.21632 0.95720 0.90932 0.99938 1.21230 0.99130 0.92845 0.98658 1.21494 0.95491 0.95975 1.01927 1.21516 0.95759 0.98755 0.99649 1.21572 0.99902 0.94131 0.99770 1.21293 0.92316 0.97163 1.01250 0.91035 0.76731 0.89004 0.89030 0.74942 0.85211 0.89324 0.90110 0.91706 0.90534 0.91354 0.92584 0.91102 0.92337 0.91810 0.93588 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 3 Si 1.00 41.86 29.55 68.60 2.03 43.89 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.41 5.29 -306.99 -1.62 -30.03 16 10 C 0.43 20.21 7.85 87.66 0.69 20.90 16 11 O -0.62 -32.56 15.24 -3.07 -0.05 -32.61 16 12 C 0.12 4.54 6.15 85.63 0.53 5.07 16 13 N -0.71 -23.56 5.53 -466.79 -2.58 -26.14 16 14 C 0.54 16.72 7.59 87.66 0.67 17.39 16 15 O -0.57 -20.64 13.08 -3.03 -0.04 -20.68 16 16 C -0.20 -4.49 5.92 -11.59 -0.07 -4.55 16 17 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.13 -2.45 9.64 30.57 0.29 -2.16 16 19 C -0.08 -1.64 1.97 -52.18 -0.10 -1.74 16 20 C -0.08 -1.21 5.67 30.71 0.17 -1.04 16 21 C -0.11 -1.40 5.93 30.64 0.18 -1.22 16 22 C -0.12 -1.73 5.82 30.56 0.18 -1.55 16 23 C -0.12 -2.12 5.93 30.64 0.18 -1.94 16 24 C -0.08 -1.98 4.24 30.71 0.13 -1.85 16 25 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 26 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 27 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 28 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.41 13.60 7.44 -92.71 -0.69 12.91 16 30 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.98 5.79 -2.39 -0.01 1.97 16 Total: -1.00 -64.77 335.49 1.77 -63.00 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: -0.38 Total: 41.93 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.13 Total: 9.32 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.92 Total: -104.85 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.09 Total: -53.29 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -64.77 1.77 -63.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344118078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.683 kcal (2) G-P(sol) polarization free energy of solvation -64.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds