Wall clock time and date at job start Tue Mar 31 2020 02:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86796 * 120.00090 * 2 1 4 4 H 1.48501 * 109.47328 * 270.00297 * 3 2 1 5 5 H 1.48500 * 109.47110 * 30.00404 * 3 2 1 6 6 H 1.48504 * 109.47357 * 150.00285 * 3 2 1 7 7 C 1.38953 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00503 * 179.72292 * 9 7 2 11 11 O 1.21296 * 119.99846 * 0.27851 * 10 9 7 12 12 C 1.50699 * 120.00553 * 180.27340 * 10 9 7 13 13 N 1.46492 * 109.47430 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00108 * 180.02562 * 13 12 10 15 15 O 1.21281 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99908 * 180.02562 * 14 13 12 17 17 H 1.09001 * 115.55673 * 31.95977 * 16 14 13 18 18 C 1.53038 * 117.50314 * 177.65586 * 16 14 13 19 19 C 1.52842 * 117.50273 * 246.26148 * 16 14 13 20 20 C 1.53151 * 117.67724 * 144.78146 * 19 16 14 21 21 C 1.53181 * 108.88670 * 268.50207 * 20 19 16 22 22 C 1.52944 * 109.45171 * 303.43914 * 21 20 19 23 23 C 1.52944 * 109.82335 * 62.98042 * 22 21 20 24 24 C 1.53151 * 117.67732 * 0.27585 * 19 16 14 25 25 H 0.96995 * 120.00030 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99831 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.47068 * 300.00625 * 12 10 9 28 28 H 1.09001 * 109.46917 * 60.00187 * 12 10 9 29 29 H 0.97005 * 120.00349 * 0.02562 * 13 12 10 30 30 H 1.08999 * 117.50085 * 214.95552 * 18 16 14 31 31 H 1.09002 * 117.50501 * 359.96232 * 18 16 14 32 32 H 1.08997 * 109.57435 * 28.32167 * 20 19 16 33 33 H 1.09004 * 109.57128 * 148.68157 * 20 19 16 34 34 H 1.08994 * 109.47479 * 183.44516 * 21 20 19 35 35 H 1.09001 * 109.47910 * 63.43020 * 21 20 19 36 36 H 1.09000 * 109.41132 * 302.87592 * 22 21 20 37 37 H 1.09000 * 109.40895 * 183.08647 * 22 21 20 38 38 H 1.08997 * 109.47715 * 177.02181 * 23 22 21 39 39 H 1.09003 * 109.47746 * 57.00495 * 23 22 21 40 40 H 1.09001 * 109.56664 * 211.30823 * 24 19 16 41 41 H 1.08989 * 109.56996 * 331.67220 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0067 11 8 3.2102 -3.5579 -0.0071 12 6 1.2437 -4.8630 -0.0129 13 7 2.1957 -5.9764 -0.0183 14 6 1.7464 -7.2471 -0.0249 15 8 0.5540 -7.4687 -0.0259 16 6 2.7258 -8.3925 -0.0299 17 1 3.6651 -8.2104 0.4922 18 6 2.1541 -9.8113 0.0182 19 6 2.7705 -9.2775 -1.2753 20 6 4.1306 -9.8380 -1.7012 21 6 4.7790 -8.8664 -2.6921 22 6 3.8383 -8.6446 -3.8775 23 6 2.5432 -7.9887 -3.3961 24 6 1.8229 -8.9322 -2.4278 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 0.0002 27 1 0.6174 -4.9252 0.8769 28 1 0.6167 -4.9163 -0.9030 29 1 3.1494 -5.7993 -0.0172 30 1 2.7176 -10.5625 0.5716 31 1 1.0697 -9.9162 0.0541 32 1 4.7707 -9.9478 -0.8258 33 1 3.9925 -10.8082 -2.1785 34 1 5.7201 -9.2851 -3.0485 35 1 4.9694 -7.9146 -2.1962 36 1 3.6079 -9.6036 -4.3415 37 1 4.3227 -7.9967 -4.6080 38 1 1.8992 -7.7850 -4.2515 39 1 2.7768 -7.0540 -2.8863 40 1 1.5375 -9.8445 -2.9516 41 1 0.9329 -8.4414 -2.0341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344118081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:47 Heat of formation + Delta-G solvation = -77.720463 kcal Electronic energy + Delta-G solvation = -22019.706476 eV Core-core repulsion = 18705.980533 eV Total energy + Delta-G solvation = -3313.725943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45776 -38.67878 -37.77714 -34.85459 -34.38245 -33.63684 -31.38936 -31.00290 -28.39521 -27.37638 -24.87249 -23.27440 -22.85628 -21.19910 -20.13826 -19.60295 -18.74753 -18.03717 -17.08823 -15.93315 -15.61217 -15.37272 -14.99131 -14.71484 -14.49017 -14.20578 -13.94770 -13.82607 -13.61028 -13.18817 -12.91720 -12.50169 -12.34386 -12.17279 -11.94060 -11.72309 -11.64047 -11.28561 -11.17188 -11.12603 -10.78109 -10.46559 -10.34622 -10.30376 -10.08864 -9.79337 -9.64280 -9.52164 -8.75331 -8.63696 -8.10842 -6.52151 -3.94180 2.66081 3.11180 3.21255 3.25570 3.36149 3.72186 3.78350 4.10760 4.49180 4.56680 4.68589 4.75182 4.87747 4.97786 5.01286 5.16366 5.18277 5.23130 5.26477 5.40025 5.54278 5.66389 5.68785 5.74106 5.81445 5.90676 5.93301 5.95864 6.01681 6.06965 6.07327 6.08627 6.18247 6.34193 6.36174 6.71379 7.45340 7.85158 7.91445 8.43707 8.50045 9.03952 9.38620 9.86559 10.64791 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.003532 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.940805 B = 7924.583937 C = 8344.979239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.703 5.703 14 C 0.544 3.456 15 O -0.551 6.551 16 C -0.183 4.183 17 H 0.121 0.879 18 C -0.142 4.142 19 C -0.089 4.089 20 C -0.081 4.081 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.093 4.093 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.411 0.589 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.980 -18.000 -4.076 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.018 4.018 13 N -0.356 5.356 14 C 0.330 3.670 15 O -0.430 6.430 16 C -0.204 4.204 17 H 0.139 0.861 18 C -0.179 4.179 19 C -0.090 4.090 20 C -0.118 4.118 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.131 4.131 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.249 0.751 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.793 -17.927 -4.068 18.997 hybrid contribution 0.231 1.122 0.135 1.153 sum 5.023 -16.806 -3.933 17.976 Atomic orbital electron populations 1.69610 1.06024 1.28533 1.49322 1.25322 0.95658 0.99927 0.96776 0.85815 0.79240 0.80494 0.78500 1.20254 1.20787 1.19306 1.19731 0.93460 0.82011 1.48273 0.87686 1.41796 1.09472 1.04481 1.62634 1.19749 0.88299 0.84998 0.85578 1.90497 1.13704 1.86830 1.57335 1.20941 0.91922 0.85854 1.03132 1.45638 1.11539 1.04493 1.73914 1.19516 0.88593 0.83111 0.75750 1.90656 1.16660 1.84873 1.50783 1.22358 1.01179 0.91584 1.05298 0.86148 1.23077 1.01934 0.93519 0.99382 1.21535 0.97662 1.00658 0.89121 1.21190 0.93081 0.98452 0.99122 1.21541 0.97957 0.99926 0.96275 1.21483 0.95959 1.00562 0.97485 1.21531 0.96419 0.98961 0.98786 1.21295 0.97546 0.99681 0.94542 0.91582 0.77052 0.89930 0.89953 0.75130 0.88174 0.87433 0.91648 0.91180 0.92004 0.91555 0.92229 0.92129 0.91965 0.91656 0.91411 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.92 13.05 55.50 0.72 -23.19 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.31 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 10 C 0.43 9.86 7.85 -10.99 -0.09 9.77 16 11 O -0.60 -15.30 15.24 5.54 0.08 -15.22 16 12 C 0.11 2.04 6.15 -5.20 -0.03 2.00 16 13 N -0.70 -11.86 5.53 -61.48 -0.34 -12.20 16 14 C 0.54 8.65 6.59 -10.99 -0.07 8.58 16 15 O -0.55 -10.23 14.95 5.56 0.08 -10.14 16 16 C -0.18 -2.24 5.89 -91.83 -0.54 -2.78 16 17 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 18 C -0.14 -1.51 9.51 -26.76 -0.25 -1.77 16 19 C -0.09 -0.95 1.98 -154.48 -0.31 -1.25 16 20 C -0.08 -0.70 5.67 -26.56 -0.15 -0.85 16 21 C -0.12 -1.09 5.93 -26.67 -0.16 -1.25 16 22 C -0.12 -1.12 5.82 -26.79 -0.16 -1.27 16 23 C -0.12 -1.36 5.93 -26.66 -0.16 -1.52 16 24 C -0.09 -1.08 5.29 -26.56 -0.14 -1.22 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.40 9.48 7.90 -40.82 -0.32 9.16 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.41 6.87 7.44 -40.82 -0.30 6.57 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 1.29 7.67 -51.93 -0.40 0.89 16 32 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.13 6.02 -51.94 -0.31 0.81 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -30.26 337.02 -8.09 -38.35 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -6.34 Total: 14.97 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.29 Total: 0.56 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.33 Total: -49.11 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.17 Total: -25.36 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.26 -8.09 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344118081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.373 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds