Wall clock time and date at job start Tue Mar 31 2020 02:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86796 * 120.00090 * 2 1 4 4 H 1.48501 * 109.47328 * 270.00297 * 3 2 1 5 5 H 1.48500 * 109.47110 * 30.00404 * 3 2 1 6 6 H 1.48504 * 109.47357 * 150.00285 * 3 2 1 7 7 C 1.38953 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00503 * 179.72292 * 9 7 2 11 11 O 1.21296 * 119.99846 * 0.27851 * 10 9 7 12 12 C 1.50699 * 120.00553 * 180.27340 * 10 9 7 13 13 N 1.46492 * 109.47430 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00108 * 180.02562 * 13 12 10 15 15 O 1.21281 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99908 * 180.02562 * 14 13 12 17 17 H 1.09001 * 115.55673 * 31.95977 * 16 14 13 18 18 C 1.53038 * 117.50314 * 177.65586 * 16 14 13 19 19 C 1.52842 * 117.50273 * 246.26148 * 16 14 13 20 20 C 1.53151 * 117.67724 * 144.78146 * 19 16 14 21 21 C 1.53181 * 108.88670 * 268.50207 * 20 19 16 22 22 C 1.52944 * 109.45171 * 303.43914 * 21 20 19 23 23 C 1.52944 * 109.82335 * 62.98042 * 22 21 20 24 24 C 1.53151 * 117.67732 * 0.27585 * 19 16 14 25 25 H 0.96995 * 120.00030 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99831 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.47068 * 300.00625 * 12 10 9 28 28 H 1.09001 * 109.46917 * 60.00187 * 12 10 9 29 29 H 0.97005 * 120.00349 * 0.02562 * 13 12 10 30 30 H 1.08999 * 117.50085 * 214.95552 * 18 16 14 31 31 H 1.09002 * 117.50501 * 359.96232 * 18 16 14 32 32 H 1.08997 * 109.57435 * 28.32167 * 20 19 16 33 33 H 1.09004 * 109.57128 * 148.68157 * 20 19 16 34 34 H 1.08994 * 109.47479 * 183.44516 * 21 20 19 35 35 H 1.09001 * 109.47910 * 63.43020 * 21 20 19 36 36 H 1.09000 * 109.41132 * 302.87592 * 22 21 20 37 37 H 1.09000 * 109.40895 * 183.08647 * 22 21 20 38 38 H 1.08997 * 109.47715 * 177.02181 * 23 22 21 39 39 H 1.09003 * 109.47746 * 57.00495 * 23 22 21 40 40 H 1.09001 * 109.56664 * 211.30823 * 24 19 16 41 41 H 1.08989 * 109.56996 * 331.67220 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0067 11 8 3.2102 -3.5579 -0.0071 12 6 1.2437 -4.8630 -0.0129 13 7 2.1957 -5.9764 -0.0183 14 6 1.7464 -7.2471 -0.0249 15 8 0.5540 -7.4687 -0.0259 16 6 2.7258 -8.3925 -0.0299 17 1 3.6651 -8.2104 0.4922 18 6 2.1541 -9.8113 0.0182 19 6 2.7705 -9.2775 -1.2753 20 6 4.1306 -9.8380 -1.7012 21 6 4.7790 -8.8664 -2.6921 22 6 3.8383 -8.6446 -3.8775 23 6 2.5432 -7.9887 -3.3961 24 6 1.8229 -8.9322 -2.4278 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 0.0002 27 1 0.6174 -4.9252 0.8769 28 1 0.6167 -4.9163 -0.9030 29 1 3.1494 -5.7993 -0.0172 30 1 2.7176 -10.5625 0.5716 31 1 1.0697 -9.9162 0.0541 32 1 4.7707 -9.9478 -0.8258 33 1 3.9925 -10.8082 -2.1785 34 1 5.7201 -9.2851 -3.0485 35 1 4.9694 -7.9146 -2.1962 36 1 3.6079 -9.6036 -4.3415 37 1 4.3227 -7.9967 -4.6080 38 1 1.8992 -7.7850 -4.2515 39 1 2.7768 -7.0540 -2.8863 40 1 1.5375 -9.8445 -2.9516 41 1 0.9329 -8.4414 -2.0341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344118081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:47 Heat of formation + Delta-G solvation = -97.321994 kcal Electronic energy + Delta-G solvation = -22020.556462 eV Core-core repulsion = 18705.980533 eV Total energy + Delta-G solvation = -3314.575929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57856 -40.31787 -39.10625 -36.29170 -35.68677 -35.25062 -33.40098 -31.80681 -29.82917 -28.40653 -26.67577 -24.50906 -23.67823 -22.00132 -21.41801 -21.30267 -20.13996 -19.68337 -18.36386 -17.30463 -17.12368 -16.83381 -16.43201 -16.25823 -15.79032 -15.45135 -15.31499 -15.12431 -14.68663 -14.29549 -14.01674 -13.79842 -13.56822 -13.54775 -13.39010 -13.13631 -12.92073 -12.57393 -12.47865 -12.13680 -12.09936 -11.98217 -11.61500 -11.59048 -11.27915 -10.96309 -10.80800 -10.60127 -10.50447 -10.18861 -10.09489 -8.53031 -6.03582 1.34793 1.41656 1.46412 1.54447 1.87953 2.00634 2.30625 2.83169 3.09177 3.14039 3.57707 3.70131 3.80554 3.90423 4.01483 4.16057 4.21815 4.28978 4.37502 4.40030 4.42666 4.44663 4.59664 4.78457 4.81284 4.91440 4.96023 5.07020 5.12486 5.16087 5.25508 5.27077 5.30398 5.36397 5.39053 5.50927 5.55972 5.89386 6.43748 6.52909 7.01073 7.17329 7.41455 7.91379 8.63971 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.003532 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.940805 B = 7924.583937 C = 8344.979239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.122 3.878 13 N -0.705 5.705 14 C 0.543 3.457 15 O -0.581 6.581 16 C -0.198 4.198 17 H 0.139 0.861 18 C -0.131 4.131 19 C -0.081 4.081 20 C -0.076 4.076 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.094 4.094 25 H 0.280 0.720 26 H 0.398 0.602 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.412 0.588 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.084 0.916 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -19.369 -4.297 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.006 4.006 13 N -0.358 5.358 14 C 0.332 3.668 15 O -0.461 6.461 16 C -0.219 4.219 17 H 0.157 0.843 18 C -0.168 4.168 19 C -0.081 4.081 20 C -0.113 4.113 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.157 4.157 24 C -0.131 4.131 25 H 0.090 0.910 26 H 0.232 0.768 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.250 0.750 30 H 0.149 0.851 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.919 -19.316 -4.290 20.654 hybrid contribution -0.168 1.501 0.177 1.521 sum 5.752 -17.815 -4.114 19.168 Atomic orbital electron populations 1.69677 1.07057 1.29694 1.49196 1.26140 0.96529 1.02707 0.95672 0.84861 0.77932 0.76398 0.78761 1.19498 1.19582 1.19393 1.19749 0.92978 0.83532 1.50522 0.89562 1.41846 1.09558 1.04631 1.63370 1.20391 0.88127 0.85878 0.83646 1.90471 1.15111 1.87517 1.58019 1.20738 0.91786 0.84193 1.03852 1.45679 1.11188 1.04533 1.74395 1.20168 0.88911 0.83339 0.74370 1.90638 1.18233 1.85208 1.52066 1.22418 1.01123 0.90816 1.07576 0.84326 1.23168 1.01393 0.92762 0.99449 1.21660 0.98683 0.99431 0.88362 1.21231 0.91582 0.98773 0.99707 1.21558 0.98705 0.99474 0.96054 1.21477 0.94810 1.01087 0.97837 1.21514 0.97703 0.97986 0.98492 1.21269 0.96669 1.00053 0.95135 0.91022 0.76764 0.89042 0.89263 0.74987 0.85095 0.89120 0.90115 0.89334 0.90133 0.93249 0.90596 0.92136 0.92103 0.94398 0.89705 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 41.88 29.55 68.60 2.03 43.90 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.34 -18.82 9.68 84.04 0.81 -18.00 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.49 5.29 -306.98 -1.62 -30.11 16 10 C 0.43 20.37 7.85 87.66 0.69 21.06 16 11 O -0.62 -32.66 15.24 -3.08 -0.05 -32.71 16 12 C 0.12 4.64 6.15 85.63 0.53 5.16 16 13 N -0.71 -24.08 5.53 -466.81 -2.58 -26.66 16 14 C 0.54 17.33 6.59 87.66 0.58 17.91 16 15 O -0.58 -21.88 14.95 -3.03 -0.05 -21.93 16 16 C -0.20 -4.60 5.89 -11.58 -0.07 -4.67 16 17 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 18 C -0.13 -2.50 9.51 30.57 0.29 -2.21 16 19 C -0.08 -1.56 1.98 -52.17 -0.10 -1.67 16 20 C -0.08 -1.06 5.67 30.71 0.17 -0.88 16 21 C -0.12 -1.90 5.93 30.64 0.18 -1.72 16 22 C -0.11 -1.98 5.82 30.56 0.18 -1.80 16 23 C -0.12 -2.69 5.93 30.64 0.18 -2.51 16 24 C -0.09 -2.11 5.29 30.71 0.16 -1.95 16 25 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 26 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 27 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 28 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.41 13.98 7.44 -92.70 -0.69 13.29 16 30 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 2.09 7.67 -2.39 -0.02 2.07 16 32 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 1.39 6.02 -2.39 -0.01 1.38 16 Total: -1.00 -65.67 337.02 1.71 -63.96 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: -0.38 Total: 43.59 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 4.07 Total: 8.67 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -3.92 Total: -105.48 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -0.09 Total: -54.64 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -65.67 1.71 -63.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344118081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.366 kcal (2) G-P(sol) polarization free energy of solvation -65.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds