Wall clock time and date at job start Tue Mar 31 2020 02:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99626 * 2 1 4 4 H 1.48502 * 109.47408 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46905 * 120.00028 * 3 2 1 6 6 H 1.48502 * 109.47015 * 239.99562 * 3 2 1 7 7 C 1.37873 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00062 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47071 * 179.97438 * 9 7 2 11 11 C 1.33793 * 124.17858 * 269.69812 * 10 9 7 12 12 O 1.21534 * 123.76938 * 0.04377 * 11 10 9 13 13 N 1.34527 * 112.45468 * 179.86716 * 11 10 9 14 14 C 1.47306 * 106.61839 * 0.38364 * 13 11 10 15 15 H 1.09000 * 110.73083 * 241.18723 * 14 13 11 16 16 C 1.53001 * 110.59718 * 118.30684 * 14 13 11 17 17 C 1.52997 * 109.47240 * 70.11576 * 16 14 13 18 18 C 1.53005 * 109.47373 * 185.86156 * 17 16 14 19 19 C 1.52997 * 109.47373 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47312 * 59.99940 * 19 18 17 21 21 C 1.53003 * 109.47249 * 300.00085 * 20 19 18 22 22 C 1.53001 * 109.47115 * 65.86375 * 17 16 14 23 23 C 1.34766 * 124.17474 * 90.00354 * 10 9 7 24 24 O 1.21237 * 127.15688 * 359.93059 * 23 10 9 25 25 H 0.96999 * 119.99703 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47069 * 300.00350 * 9 7 2 27 27 H 1.09000 * 109.46699 * 59.99751 * 9 7 2 28 28 H 0.97001 * 126.69226 * 180.19888 * 13 11 10 29 29 H 1.09002 * 109.47513 * 190.11620 * 16 14 13 30 30 H 1.08995 * 109.47286 * 310.11132 * 16 14 13 31 31 H 1.08998 * 109.47598 * 305.86032 * 17 16 14 32 32 H 1.08999 * 109.47247 * 299.99979 * 18 17 16 33 33 H 1.09005 * 109.47060 * 59.99643 * 18 17 16 34 34 H 1.08999 * 109.46916 * 300.00181 * 19 18 17 35 35 H 1.09003 * 109.47340 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47459 * 180.02562 * 20 19 18 37 37 H 1.09007 * 109.47337 * 59.99761 * 20 19 18 38 38 H 1.08999 * 109.47288 * 299.99948 * 21 20 19 39 39 H 1.08998 * 109.46928 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47150 * 299.99695 * 22 17 16 41 41 H 1.08999 * 109.47259 * 60.00173 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6872 -4.1876 -1.1063 12 8 2.3867 -3.8442 -2.2327 13 7 3.5465 -5.1860 -0.8330 14 6 3.6285 -5.2812 0.6347 15 1 4.6463 -5.0945 0.9772 16 6 3.1443 -6.6515 1.1131 17 6 4.1591 -7.7217 0.7060 18 6 3.6077 -9.1059 1.0538 19 6 4.6228 -10.1761 0.6473 20 6 5.9351 -9.9462 1.3995 21 6 6.4865 -8.5620 1.0518 22 6 5.4717 -7.4920 1.4578 23 6 2.6951 -4.1880 1.1155 24 8 2.4437 -3.8923 2.2641 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 4.0179 -5.7375 -1.4768 29 1 3.0416 -6.6421 2.1982 30 1 2.1789 -6.8746 0.6588 31 1 4.3397 -7.6617 -0.3672 32 1 3.4271 -9.1660 2.1270 33 1 2.6725 -9.2696 0.5182 34 1 4.8038 -10.1162 -0.4259 35 1 4.2302 -11.1622 0.8955 36 1 6.6584 -10.7083 1.1096 37 1 5.7541 -10.0060 2.4728 38 1 6.6676 -8.5021 -0.0214 39 1 7.4212 -8.3981 1.5880 40 1 5.8646 -6.5059 1.2101 41 1 5.2911 -7.5521 2.5311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349171097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:47 Heat of formation + Delta-G solvation = -81.828787 kcal Electronic energy + Delta-G solvation = -22435.849271 eV Core-core repulsion = 19121.945177 eV Total energy + Delta-G solvation = -3313.904094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84538 -39.02288 -37.92753 -35.80259 -34.84726 -33.11910 -32.11747 -31.04238 -28.51982 -27.36229 -24.67320 -23.31656 -22.88214 -22.14679 -20.90442 -20.26598 -19.67359 -17.60003 -17.15667 -16.52854 -15.80503 -15.60948 -15.07574 -14.73359 -14.58550 -14.46287 -14.24336 -13.84551 -13.69688 -13.53164 -13.18181 -12.57466 -12.52131 -12.36014 -12.17568 -11.72735 -11.63748 -11.38961 -11.27411 -11.16245 -10.72277 -10.68339 -10.49102 -10.26778 -10.18189 -10.07445 -9.66349 -9.53429 -9.16866 -8.46477 -8.37155 -6.48994 -4.21510 2.15897 2.88911 3.42443 3.45309 3.56229 3.63871 3.68696 4.27438 4.36917 4.42445 4.49384 4.55660 4.69287 4.85860 4.99500 5.08225 5.13447 5.21111 5.24948 5.28279 5.31050 5.39925 5.55682 5.65984 5.73760 5.77462 5.86183 5.87516 5.91893 5.95063 6.00540 6.09886 6.22549 6.44694 6.79443 6.87547 7.11379 7.81755 7.83917 7.99857 8.28569 8.64904 8.76599 9.47209 10.90048 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.003779 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.487259 B = 7408.074322 C = 7506.047770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 1.075 2.925 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.614 4.614 8 H 0.054 0.946 9 C 0.239 3.761 10 N -0.553 5.553 11 C 0.700 3.300 12 O -0.542 6.542 13 N -0.734 5.734 14 C 0.091 3.909 15 H 0.120 0.880 16 C -0.114 4.114 17 C -0.084 4.084 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.121 4.121 23 C 0.521 3.479 24 O -0.474 6.474 25 H 0.268 0.732 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.431 0.569 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.459 -20.563 2.712 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.180 4.180 3 Si 0.902 3.098 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.652 4.652 8 H 0.072 0.928 9 C 0.121 3.879 10 N -0.297 5.297 11 C 0.401 3.599 12 O -0.416 6.416 13 N -0.400 5.400 14 C -0.018 4.018 15 H 0.138 0.862 16 C -0.152 4.152 17 C -0.102 4.102 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.158 4.158 23 C 0.306 3.694 24 O -0.345 6.345 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.274 0.726 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.838 -18.435 2.750 21.561 hybrid contribution 0.507 -1.926 -0.306 2.015 sum 11.345 -20.360 2.443 23.436 Atomic orbital electron populations 1.70814 1.06751 1.30529 1.45691 1.25863 0.96378 1.02670 0.93105 0.83460 0.74892 0.74775 0.76671 1.20439 1.21238 1.21229 1.22094 0.94721 0.91226 1.57156 0.92766 1.19618 0.87358 0.82349 0.98559 1.46590 1.43082 1.33496 1.06503 1.15963 0.79320 0.79714 0.84891 1.90958 1.63142 1.66641 1.20853 1.45561 1.49261 1.38227 1.06946 1.22117 1.01565 0.96231 0.81906 0.86235 1.21850 0.99519 0.91213 1.02662 1.21136 0.94602 0.94136 1.00334 1.21572 0.98228 0.93734 1.01638 1.21526 0.95435 0.98455 1.00253 1.21545 0.96878 0.96956 1.00392 1.21520 0.98177 0.94667 1.01316 1.21691 0.94757 0.98782 1.00568 1.20650 0.80759 0.82503 0.85441 1.90743 1.60054 1.65472 1.18210 0.92169 0.94074 0.93861 0.72594 0.89381 0.90650 0.90994 0.91720 0.91862 0.92035 0.92152 0.92314 0.92022 0.92034 0.92059 0.91654 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.65 55.43 0.76 -26.84 16 2 C 0.02 0.73 5.46 -17.82 -0.10 0.63 16 3 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.61 -17.99 9.39 -34.44 -0.32 -18.31 16 8 H 0.05 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 6.40 4.77 -5.19 -0.02 6.37 16 10 N -0.55 -12.41 2.59 -122.03 -0.32 -12.73 16 11 C 0.70 14.41 8.62 -88.02 -0.76 13.65 16 12 O -0.54 -13.21 17.48 5.34 0.09 -13.12 16 13 N -0.73 -10.43 6.02 -59.20 -0.36 -10.78 16 14 C 0.09 1.22 3.52 -68.21 -0.24 0.98 16 15 H 0.12 1.37 6.38 -51.93 -0.33 1.03 16 16 C -0.11 -1.19 4.42 -26.73 -0.12 -1.31 16 17 C -0.08 -0.67 2.16 -90.62 -0.20 -0.87 16 18 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 19 C -0.12 -0.80 5.92 -26.73 -0.16 -0.95 16 20 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 21 C -0.12 -0.81 5.92 -26.75 -0.16 -0.97 16 22 C -0.12 -0.91 4.99 -26.75 -0.13 -1.05 16 23 C 0.52 10.18 7.65 -10.56 -0.08 10.10 16 24 O -0.47 -10.53 17.76 5.59 0.10 -10.43 16 25 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 26 H 0.04 1.13 7.87 -51.93 -0.41 0.72 16 27 H 0.04 1.21 7.72 -51.93 -0.40 0.81 16 28 H 0.43 4.72 8.46 -40.82 -0.35 4.37 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.56 7.44 -51.93 -0.39 0.18 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.51 6.47 -51.93 -0.34 0.17 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -34.42 331.60 -8.76 -43.17 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.36 Total: -1.32 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -2.59 Total: 6.36 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.08 Total: -50.35 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.19 Total: -23.55 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.42 -8.76 -43.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349171097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.657 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds