Wall clock time and date at job start Tue Mar 31 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99626 * 2 1 4 4 H 1.48502 * 109.47408 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46905 * 120.00028 * 3 2 1 6 6 H 1.48502 * 109.47015 * 239.99562 * 3 2 1 7 7 C 1.37873 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00062 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47071 * 179.97438 * 9 7 2 11 11 C 1.33793 * 124.17858 * 269.69812 * 10 9 7 12 12 O 1.21534 * 123.76938 * 0.04377 * 11 10 9 13 13 N 1.34527 * 112.45468 * 179.86716 * 11 10 9 14 14 C 1.47306 * 106.61839 * 0.38364 * 13 11 10 15 15 H 1.09000 * 110.73083 * 241.18723 * 14 13 11 16 16 C 1.53001 * 110.59718 * 118.30684 * 14 13 11 17 17 C 1.52997 * 109.47240 * 70.11576 * 16 14 13 18 18 C 1.53005 * 109.47373 * 185.86156 * 17 16 14 19 19 C 1.52997 * 109.47373 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47312 * 59.99940 * 19 18 17 21 21 C 1.53003 * 109.47249 * 300.00085 * 20 19 18 22 22 C 1.53001 * 109.47115 * 65.86375 * 17 16 14 23 23 C 1.34766 * 124.17474 * 90.00354 * 10 9 7 24 24 O 1.21237 * 127.15688 * 359.93059 * 23 10 9 25 25 H 0.96999 * 119.99703 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47069 * 300.00350 * 9 7 2 27 27 H 1.09000 * 109.46699 * 59.99751 * 9 7 2 28 28 H 0.97001 * 126.69226 * 180.19888 * 13 11 10 29 29 H 1.09002 * 109.47513 * 190.11620 * 16 14 13 30 30 H 1.08995 * 109.47286 * 310.11132 * 16 14 13 31 31 H 1.08998 * 109.47598 * 305.86032 * 17 16 14 32 32 H 1.08999 * 109.47247 * 299.99979 * 18 17 16 33 33 H 1.09005 * 109.47060 * 59.99643 * 18 17 16 34 34 H 1.08999 * 109.46916 * 300.00181 * 19 18 17 35 35 H 1.09003 * 109.47340 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47459 * 180.02562 * 20 19 18 37 37 H 1.09007 * 109.47337 * 59.99761 * 20 19 18 38 38 H 1.08999 * 109.47288 * 299.99948 * 21 20 19 39 39 H 1.08998 * 109.46928 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47150 * 299.99695 * 22 17 16 41 41 H 1.08999 * 109.47259 * 60.00173 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6872 -4.1876 -1.1063 12 8 2.3867 -3.8442 -2.2327 13 7 3.5465 -5.1860 -0.8330 14 6 3.6285 -5.2812 0.6347 15 1 4.6463 -5.0945 0.9772 16 6 3.1443 -6.6515 1.1131 17 6 4.1591 -7.7217 0.7060 18 6 3.6077 -9.1059 1.0538 19 6 4.6228 -10.1761 0.6473 20 6 5.9351 -9.9462 1.3995 21 6 6.4865 -8.5620 1.0518 22 6 5.4717 -7.4920 1.4578 23 6 2.6951 -4.1880 1.1155 24 8 2.4437 -3.8923 2.2641 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 4.0179 -5.7375 -1.4768 29 1 3.0416 -6.6421 2.1982 30 1 2.1789 -6.8746 0.6588 31 1 4.3397 -7.6617 -0.3672 32 1 3.4271 -9.1660 2.1270 33 1 2.6725 -9.2696 0.5182 34 1 4.8038 -10.1162 -0.4259 35 1 4.2302 -11.1622 0.8955 36 1 6.6584 -10.7083 1.1096 37 1 5.7541 -10.0060 2.4728 38 1 6.6676 -8.5021 -0.0214 39 1 7.4212 -8.3981 1.5880 40 1 5.8646 -6.5059 1.2101 41 1 5.2911 -7.5521 2.5311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349171097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:46 Heat of formation + Delta-G solvation = -104.792480 kcal Electronic energy + Delta-G solvation = -22436.845051 eV Core-core repulsion = 19121.945177 eV Total energy + Delta-G solvation = -3314.899874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.40861 -39.78817 -39.53561 -37.28826 -36.66836 -34.87349 -33.32648 -31.58662 -29.74522 -29.17311 -25.99470 -25.23840 -23.76771 -23.25113 -21.74214 -21.69587 -20.46881 -19.38621 -18.99480 -18.08628 -17.27950 -16.61563 -16.55074 -16.10630 -15.82395 -15.66902 -15.24123 -15.16373 -14.91656 -14.81900 -14.64784 -13.95158 -13.91445 -13.47218 -13.31809 -12.98882 -12.93023 -12.56949 -12.41747 -12.01173 -11.93257 -11.91223 -11.75832 -11.65931 -11.35115 -11.22184 -10.94824 -10.83770 -10.69651 -10.54386 -10.32650 -8.84053 -6.58786 0.58389 1.31089 1.48917 1.57540 1.78023 2.01270 2.21394 2.49603 2.93562 3.01507 3.52930 3.71992 3.82880 3.91011 4.10906 4.24194 4.30885 4.45966 4.47446 4.50053 4.61169 4.66607 4.69046 4.71928 4.79956 4.83259 4.87996 5.01274 5.10654 5.24749 5.34210 5.35305 5.36890 5.45979 5.52124 5.56997 5.66469 5.80873 5.92211 6.21545 6.29525 6.44333 7.11484 7.21966 8.55015 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.003779 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.487259 B = 7408.074322 C = 7506.047770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.122 2.878 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.630 4.630 8 H 0.048 0.952 9 C 0.250 3.750 10 N -0.570 5.570 11 C 0.696 3.304 12 O -0.587 6.587 13 N -0.698 5.698 14 C 0.112 3.888 15 H 0.156 0.844 16 C -0.107 4.107 17 C -0.076 4.076 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.122 4.122 23 C 0.510 3.490 24 O -0.506 6.506 25 H 0.257 0.743 26 H 0.025 0.975 27 H 0.021 0.979 28 H 0.451 0.549 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.832 -21.793 2.929 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.224 4.224 3 Si 0.941 3.059 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.668 4.668 8 H 0.067 0.933 9 C 0.130 3.870 10 N -0.314 5.314 11 C 0.397 3.603 12 O -0.464 6.464 13 N -0.365 5.365 14 C 0.004 3.996 15 H 0.173 0.827 16 C -0.145 4.145 17 C -0.095 4.095 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.160 4.160 23 C 0.299 3.701 24 O -0.379 6.379 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.299 0.701 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.260 -19.761 2.977 23.983 hybrid contribution -0.253 -1.635 -0.328 1.687 sum 13.007 -21.396 2.649 25.179 Atomic orbital electron populations 1.70926 1.07642 1.29942 1.47216 1.27475 0.96506 1.06557 0.91830 0.82893 0.74232 0.70719 0.78019 1.19896 1.19227 1.19570 1.22387 0.94617 0.92609 1.57214 0.93339 1.19098 0.87861 0.83511 0.96554 1.46574 1.43142 1.33145 1.08522 1.16079 0.79950 0.80624 0.83675 1.90924 1.64916 1.68317 1.22281 1.45337 1.47052 1.36122 1.07961 1.22269 1.01452 0.95322 0.80581 0.82745 1.21874 1.00056 0.89736 1.02839 1.21101 0.94054 0.93425 1.00873 1.21561 0.98419 0.93529 1.01647 1.21514 0.95276 0.98343 1.00368 1.21550 0.96880 0.97059 1.00287 1.21512 0.98068 0.94417 1.01557 1.21714 0.94526 0.99230 1.00484 1.21670 0.80859 0.83184 0.84387 1.90717 1.61224 1.66661 1.19260 0.93370 0.95744 0.96136 0.70083 0.88935 0.91209 0.90154 0.91769 0.92061 0.91859 0.91722 0.91709 0.92168 0.91729 0.91665 0.91423 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.63 13.65 21.45 0.29 -57.34 16 2 C -0.02 -1.45 5.46 84.65 0.46 -0.99 16 3 Si 1.12 51.50 29.90 68.60 2.05 53.55 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.63 -37.76 9.39 25.60 0.24 -37.52 16 8 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 9 C 0.25 13.95 4.77 85.63 0.41 14.36 16 10 N -0.57 -26.01 2.59 -777.23 -2.01 -28.02 16 11 C 0.70 28.52 8.62 179.44 1.55 30.07 16 12 O -0.59 -29.03 17.48 -3.82 -0.07 -29.10 16 13 N -0.70 -18.29 6.02 -459.63 -2.77 -21.06 16 14 C 0.11 2.71 3.52 44.37 0.16 2.87 16 15 H 0.16 2.91 6.38 -2.39 -0.02 2.90 16 16 C -0.11 -1.96 4.42 30.59 0.14 -1.82 16 17 C -0.08 -0.98 2.16 -10.79 -0.02 -1.00 16 18 C -0.11 -1.40 5.20 30.59 0.16 -1.24 16 19 C -0.12 -1.25 5.92 30.59 0.18 -1.07 16 20 C -0.12 -1.22 5.92 30.59 0.18 -1.04 16 21 C -0.12 -1.23 5.92 30.58 0.18 -1.05 16 22 C -0.12 -1.44 4.99 30.58 0.15 -1.29 16 23 C 0.51 19.78 7.65 87.94 0.67 20.45 16 24 O -0.51 -22.62 17.76 -2.90 -0.05 -22.67 16 25 H 0.26 16.19 7.22 -92.71 -0.67 15.52 16 26 H 0.02 1.43 7.87 -2.39 -0.02 1.41 16 27 H 0.02 1.23 7.72 -2.39 -0.02 1.21 16 28 H 0.45 8.42 8.46 -92.71 -0.78 7.63 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 0.94 7.44 -2.39 -0.02 0.92 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.77 6.47 -2.39 -0.02 0.76 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -77.01 331.60 2.25 -74.76 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.34 Total: 9.16 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 4.45 Total: 20.72 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.48 Total: -106.41 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.12 Total: -51.77 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -77.01 2.25 -74.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349171097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.035 kcal (2) G-P(sol) polarization free energy of solvation -77.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds