Wall clock time and date at job start Tue Mar 31 2020 02:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99889 * 2 1 4 4 H 1.48501 * 109.46922 * 269.71922 * 3 2 1 5 5 H 1.48496 * 109.47354 * 29.72118 * 3 2 1 6 6 H 1.48501 * 109.47428 * 149.72226 * 3 2 1 7 7 C 1.38955 * 119.99820 * 179.71718 * 2 1 3 8 8 H 1.07999 * 120.00192 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99362 * 180.02562 * 7 2 1 10 10 C 1.34784 * 119.99504 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47124 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00021 * 179.97438 * 13 12 10 15 15 O 1.21285 * 119.99795 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00162 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.46701 * 300.00090 * 16 14 13 18 18 C 1.53000 * 109.47061 * 59.99512 * 16 14 13 19 19 C 1.53006 * 109.46673 * 120.00475 * 18 16 14 20 20 C 1.53003 * 109.47309 * 59.99729 * 19 18 16 21 21 C 1.52997 * 109.47123 * 300.00185 * 20 19 18 22 22 C 1.52992 * 109.47156 * 180.02562 * 16 14 13 23 23 C 1.53000 * 109.47194 * 299.99561 * 22 16 14 24 24 C 1.53002 * 109.47418 * 300.00454 * 23 22 16 25 25 H 0.97000 * 120.00377 * 0.27775 * 1 2 3 26 26 H 0.96999 * 120.00452 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 28 28 H 1.09005 * 109.47238 * 59.99845 * 12 10 9 29 29 H 0.97000 * 119.99743 * 0.02562 * 13 12 10 30 30 H 1.09001 * 109.47227 * 240.00002 * 18 16 14 31 31 H 1.08992 * 109.47460 * 0.02562 * 18 16 14 32 32 H 1.09000 * 109.47367 * 180.02562 * 19 18 16 33 33 H 1.09001 * 109.46901 * 179.97438 * 20 19 18 34 34 H 1.08994 * 109.46503 * 60.00289 * 20 19 18 35 35 H 1.08996 * 109.47130 * 239.99538 * 21 20 19 36 36 H 1.09002 * 109.47045 * 119.99651 * 21 20 19 37 37 H 1.08997 * 109.47528 * 59.99397 * 22 16 14 38 38 H 1.08998 * 109.47094 * 60.00195 * 23 22 16 39 39 H 1.09005 * 109.47612 * 180.02562 * 23 22 16 40 40 H 1.09002 * 109.46948 * 240.00332 * 24 23 22 41 41 H 1.08988 * 109.47495 * 119.99292 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.5015 2.0429 -1.4001 5 1 1.4426 2.6543 0.6941 6 1 3.5427 1.4420 0.7059 7 6 2.0089 -1.2034 0.0059 8 1 1.4689 -2.1387 0.0101 9 7 3.3799 -1.2033 0.0065 10 6 4.0538 -2.3705 0.0117 11 8 3.4473 -3.4210 0.0164 12 6 5.5608 -2.3705 0.0129 13 7 6.0491 -3.7517 0.0195 14 6 7.3742 -3.9980 0.0211 15 8 8.1623 -3.0761 0.0175 16 6 7.8766 -5.4187 0.0272 17 1 7.5128 -5.9288 0.9193 18 6 7.3670 -6.1453 -1.2191 19 6 8.5574 -6.6297 -2.0494 20 6 9.4071 -7.5878 -1.2121 21 6 9.9165 -6.8612 0.0343 22 6 9.4065 -5.4187 0.0286 23 6 9.9176 -4.7026 -1.2232 24 6 9.4086 -5.4289 -2.4700 25 1 -0.4851 0.8400 -0.0041 26 1 3.8649 -0.3633 0.0031 27 1 5.9248 -1.8602 -0.8789 28 1 5.9235 -1.8531 0.9011 29 1 5.4187 -4.4889 0.0219 30 1 6.7614 -7.0004 -0.9191 31 1 6.7621 -5.4626 -1.8158 32 1 8.1946 -7.1469 -2.9376 33 1 10.2549 -7.9331 -1.8038 34 1 8.8014 -8.4428 -0.9121 35 1 11.0065 -6.8612 0.0348 36 1 9.5528 -7.3712 0.9263 37 1 9.7691 -4.9012 0.9167 38 1 9.5542 -3.6750 -1.2277 39 1 11.0076 -4.7029 -1.2226 40 1 10.2569 -5.7740 -3.0611 41 1 8.8035 -4.7463 -3.0665 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354398555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:34 Heat of formation + Delta-G solvation = -94.210811 kcal Electronic energy + Delta-G solvation = -22268.404877 eV Core-core repulsion = 18953.963859 eV Total energy + Delta-G solvation = -3314.441018 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13890 -38.99097 -38.00033 -34.57292 -33.80849 -31.86097 -31.61233 -31.34403 -30.86574 -27.77329 -24.60837 -23.32729 -22.62997 -22.05622 -20.16326 -19.63859 -18.68696 -17.42431 -16.70576 -16.62359 -15.99106 -15.78944 -15.22853 -15.14957 -14.96170 -14.46290 -13.87444 -13.37255 -13.03333 -12.81980 -12.49695 -12.34746 -12.27367 -12.20048 -12.17333 -12.10917 -12.07408 -12.05107 -11.61127 -11.24495 -10.84480 -10.65925 -10.32335 -10.07856 -9.98556 -9.94891 -9.71367 -9.33763 -8.81708 -8.78619 -8.32046 -6.42308 -3.94930 2.78526 2.98308 3.02889 3.10946 3.30754 3.54789 4.02148 4.33500 4.45442 4.51159 4.57237 4.96444 5.07538 5.12242 5.12542 5.14514 5.17362 5.22678 5.27536 5.35124 5.44058 5.54229 5.62773 5.68638 5.76957 5.80590 5.84958 5.94212 5.95013 6.09346 6.14474 6.21027 6.24705 6.35568 6.44641 6.66889 7.42626 7.76400 7.98920 8.38457 8.46283 8.80128 9.28264 9.61882 10.69881 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037894 B = 0.003448 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.729899 B = 8118.986168 C = 8420.541807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.708 5.708 14 C 0.517 3.483 15 O -0.545 6.545 16 C -0.100 4.100 17 H 0.096 0.904 18 C -0.109 4.109 19 C -0.086 4.086 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.063 4.063 23 C -0.126 4.126 24 C -0.115 4.115 25 H 0.276 0.724 26 H 0.374 0.626 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.412 0.588 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.372 -10.713 -2.011 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.463 6.463 12 C -0.022 4.022 13 N -0.362 5.362 14 C 0.304 3.696 15 O -0.424 6.424 16 C -0.121 4.121 17 H 0.114 0.886 18 C -0.147 4.147 19 C -0.104 4.104 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.082 4.082 23 C -0.163 4.163 24 C -0.152 4.152 25 H 0.086 0.914 26 H 0.207 0.793 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.250 0.750 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.271 -10.613 -2.005 22.091 hybrid contribution 0.113 1.109 0.048 1.116 sum 19.384 -9.504 -1.956 21.677 Atomic orbital electron populations 1.69617 1.05716 1.27833 1.48153 1.25067 0.95531 0.98168 0.97121 0.86672 0.79917 0.83766 0.79143 1.19384 1.19960 1.19238 1.19446 0.78974 0.96801 1.48688 0.86083 1.42130 1.07700 1.06144 1.65426 1.19664 0.88106 0.84873 0.84999 1.90538 1.69223 1.30899 1.55650 1.20962 0.93697 0.84335 1.03201 1.45754 1.07193 1.08967 1.74329 1.20616 0.81855 0.91431 0.75728 1.90599 1.55120 1.46471 1.50187 1.21307 0.97325 0.92946 1.00564 0.88599 1.21600 0.97576 1.00239 0.95264 1.21042 0.95262 0.96196 0.97900 1.21548 0.99297 0.97664 0.96560 1.21564 1.00409 0.95219 0.97956 1.20762 0.92337 0.95650 0.99418 1.21784 0.99788 1.01567 0.93200 1.21578 0.99106 0.96746 0.97805 0.91370 0.79262 0.89844 0.89828 0.75024 0.90870 0.91075 0.91029 0.92123 0.92006 0.91832 0.92029 0.90667 0.88975 0.92625 0.92347 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.93 13.96 55.50 0.77 -24.15 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.97 27.73 -169.99 -4.71 14.25 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.29 6.53 56.52 0.37 -4.92 16 7 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 N -0.58 -13.37 5.09 -10.96 -0.06 -13.43 16 10 C 0.44 9.57 7.85 -10.98 -0.09 9.49 16 11 O -0.58 -14.53 15.24 5.55 0.08 -14.44 16 12 C 0.11 1.82 6.15 -5.20 -0.03 1.79 16 13 N -0.71 -11.09 5.27 -61.47 -0.32 -11.41 16 14 C 0.52 7.56 6.61 -10.99 -0.07 7.49 16 15 O -0.55 -9.30 13.66 5.55 0.08 -9.23 16 16 C -0.10 -1.12 2.56 -91.78 -0.24 -1.36 16 17 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 18 C -0.11 -1.11 5.21 -26.73 -0.14 -1.25 16 19 C -0.09 -0.79 3.20 -90.58 -0.29 -1.08 16 20 C -0.11 -0.91 5.71 -26.73 -0.15 -1.06 16 21 C -0.11 -0.96 5.71 -26.73 -0.15 -1.11 16 22 C -0.06 -0.67 2.36 -90.62 -0.21 -0.88 16 23 C -0.13 -1.42 5.39 -26.73 -0.14 -1.56 16 24 C -0.11 -1.16 5.71 -26.69 -0.15 -1.31 16 25 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.37 7.67 5.77 -40.82 -0.24 7.43 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.41 6.42 7.33 -40.82 -0.30 6.12 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.82 7.44 -51.93 -0.39 0.44 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.09 1.29 5.51 -51.93 -0.29 1.00 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.65 8.14 -51.94 -0.42 0.23 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -31.02 321.36 -7.49 -38.51 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -6.26 Total: 13.48 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.92 Total: 1.57 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.39 Total: -48.99 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.16 Total: -23.67 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.02 -7.49 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354398555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.697 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds